RNA–Protein interactions for RNA: ENST00000497993.5

TMEM39A-212, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 590 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-212ENST00000497993 MBD5Q9P267 1494 aa9.03□□□□□ -0.96
TMEM39A-212ENST00000497993 LOC105371045A0A1W2PR82 267 aa9.03□□□□□ -0.96
TMEM39A-212ENST00000497993 RAPGEF3O95398 923 aa9.03□□□□□ -0.96
TMEM39A-212ENST00000497993 DIXDC1Q155Q3 683 aa9.03□□□□□ -0.96
TMEM39A-212ENST00000497993 ATP7AQ04656 1500 aa9.03□□□□□ -0.96
TMEM39A-212ENST00000497993 FAM135AQ9P2D6 1515 aa9.03□□□□□ -0.96
TMEM39A-212ENST00000497993 ACTN4O43707 911 aaKnown RBP9.02□□□□□ -0.97
TMEM39A-212ENST00000497993 FAM117AQ9C073 453 aa9.02□□□□□ -0.97
TMEM39A-212ENST00000497993 TRAPPC8Q9Y2L5 1435 aa9.02□□□□□ -0.97
TMEM39A-212ENST00000497993 KDM4AO75164 1064 aa9.01□□□□□ -0.97
TMEM39A-212ENST00000497993 APLP1P51693 650 aa9.01□□□□□ -0.97
TMEM39A-212ENST00000497993 USP46P62068 366 aa9.01□□□□□ -0.97
TMEM39A-212ENST00000497993 NUTM1Q86Y26 1132 aa9.01□□□□□ -0.97
TMEM39A-212ENST00000497993 CCNB3Q8WWL7 1395 aa9□□□□□ -0.97
TMEM39A-212ENST00000497993 RTEL1-TNFRSF6BF6WH68 1400 aa9□□□□□ -0.97
TMEM39A-212ENST00000497993 MIA2Q96PC5 1412 aa9□□□□□ -0.97
TMEM39A-212ENST00000497993 GRIPAP1Q4V328 841 aa9□□□□□ -0.97
TMEM39A-212ENST00000497993 PTPRMP28827 1452 aa9□□□□□ -0.97
TMEM39A-212ENST00000497993 CAMSAP2Q08AD1 1489 aa9□□□□□ -0.97
TMEM39A-212ENST00000497993 EIF2AK4Q9P2K8 1649 aaKnown RBP8.98□□□□□ -0.97
TMEM39A-212ENST00000497993 C3P01024 1663 aa8.98□□□□□ -0.97
TMEM39A-212ENST00000497993 PREX1Q8TCU6 1659 aa8.98□□□□□ -0.97
TMEM39A-212ENST00000497993 CCDC141Q6ZP82 1450 aa8.98□□□□□ -0.97
TMEM39A-212ENST00000497993 ATP6V1AP38606 617 aa8.98□□□□□ -0.97
TMEM39A-212ENST00000497993 TMCO4Q5TGY1 634 aa8.98□□□□□ -0.97
TMEM39A-212ENST00000497993 RNF17Q9BXT8 1623 aaKnown RBP8.98□□□□□ -0.97
TMEM39A-212ENST00000497993 MYOM3Q5VTT5 1437 aa8.97□□□□□ -0.97
TMEM39A-212ENST00000497993 TCOF1Q13428 1488 aaKnown RBP8.97□□□□□ -0.97
TMEM39A-212ENST00000497993 FUT2Q10981 343 aa8.97□□□□□ -0.97
TMEM39A-212ENST00000497993 SPIRE2Q8WWL2 714 aa8.97□□□□□ -0.97
TMEM39A-212ENST00000497993 GOPCQ9HD26 462 aa8.97□□□□□ -0.97
TMEM39A-212ENST00000497993 ATP1B4Q9UN42 357 aaPredicted RBP8.97□□□□□ -0.97
TMEM39A-212ENST00000497993 PCDHB3Q9Y5E6 796 aa8.97□□□□□ -0.97
TMEM39A-212ENST00000497993 DNMT1P26358 1616 aaKnown RBP8.97□□□□□ -0.97
TMEM39A-212ENST00000497993 SHANK2Q9UPX8 1470 aa8.96□□□□□ -0.97
TMEM39A-212ENST00000497993 PLEKHG3A1L390 1219 aa8.96□□□□□ -0.98
TMEM39A-212ENST00000497993 AEBP1Q8IUX7 1158 aa8.96□□□□□ -0.98
TMEM39A-212ENST00000497993 CCDC97Q96F63 343 aaPredicted RBP8.96□□□□□ -0.98
TMEM39A-212ENST00000497993 TBC1D2Q9BYX2 928 aa8.96□□□□□ -0.98
TMEM39A-212ENST00000497993 SERPINA10Q9UK55 444 aa8.96□□□□□ -0.98
TMEM39A-212ENST00000497993 PTPN23Q9H3S7 1636 aa8.95□□□□□ -0.98
TMEM39A-212ENST00000497993 ZNF142P52746 1687 aaPredicted RBP8.95□□□□□ -0.98
TMEM39A-212ENST00000497993 ZC3H13Q5T200 1668 aaKnown RBP8.95□□□□□ -0.98
TMEM39A-212ENST00000497993 RGS22Q8NE09 1264 aa8.95□□□□□ -0.98
TMEM39A-212ENST00000497993 CLUAP1Q96AJ1 413 aa8.95□□□□□ -0.98
TMEM39A-212ENST00000497993 HOXA2O43364 376 aa8.94□□□□□ -0.98
TMEM39A-212ENST00000497993 GJA5P36382 358 aa8.94□□□□□ -0.98
TMEM39A-212ENST00000497993 CFDP1Q9UEE9 299 aaPredicted RBP8.94□□□□□ -0.98
TMEM39A-212ENST00000497993 CNTLNQ9NXG0 1405 aa8.94□□□□□ -0.98
TMEM39A-212ENST00000497993 A2MP01023 1474 aa8.94□□□□□ -0.98
TMEM39A-212ENST00000497993 DEPDC5O75140 1603 aa8.94□□□□□ -0.98
TMEM39A-212ENST00000497993 NR1I2O75469 434 aa8.93□□□□□ -0.98
TMEM39A-212ENST00000497993 MORN1Q5T089 497 aa8.93□□□□□ -0.98
TMEM39A-212ENST00000497993 AFAP1Q8N556 730 aa8.93□□□□□ -0.98
TMEM39A-212ENST00000497993 LMTK3Q96Q04 1460 aa8.93□□□□□ -0.98
TMEM39A-212ENST00000497993 MROH1Q8NDA8 1641 aa8.92□□□□□ -0.98
TMEM39A-212ENST00000497993 HMGB1P09429 215 aaKnown RBP8.92□□□□□ -0.98
TMEM39A-212ENST00000497993 SH3D19Q5HYK7 790 aa8.92□□□□□ -0.98
TMEM39A-212ENST00000497993 MYSM1Q5VVJ2 828 aa8.92□□□□□ -0.98
TMEM39A-212ENST00000497993 IL21Q9HBE4 155 aa8.92□□□□□ -0.98
TMEM39A-212ENST00000497993 PLSCR2Q9NRY7 297 aa8.92□□□□□ -0.98
TMEM39A-212ENST00000497993 CLTCQ00610 1675 aaKnown RBP8.91□□□□□ -0.98
TMEM39A-212ENST00000497993 KDM5DQ9BY66 1539 aa8.91□□□□□ -0.98
TMEM39A-212ENST00000497993 FGD6Q6ZV73 1430 aa8.91□□□□□ -0.98
TMEM39A-212ENST00000497993 SKIV2LQ15477 1246 aaKnown RBP8.91□□□□□ -0.98
TMEM39A-212ENST00000497993 PUS10Q3MIT2 529 aaKnown RBP8.91□□□□□ -0.98
TMEM39A-212ENST00000497993 TJAP1Q5JTD0 557 aa8.91□□□□□ -0.98
TMEM39A-212ENST00000497993 BLOC1S3Q6QNY0 202 aa8.91□□□□□ -0.98
TMEM39A-212ENST00000497993 MTRQ99707 1265 aa8.91□□□□□ -0.98
TMEM39A-212ENST00000497993 SPAG9O60271 1321 aaKnown RBP8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 MOXD2PA6NHM9 499 aa8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 SPTLC1O15269 473 aa8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 ITGBL1O95965 494 aaPredicted RBP8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 MYT1Q01538 1121 aa8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 TUSC1Q2TAM9 212 aa8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 Q3C1V9 767 aa8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 KANK4Q5T7N3 995 aaPredicted RBP8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 RIC3Q7Z5B4 369 aa8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 SCUBE3Q8IX30 993 aa8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 MTMR7Q9Y216 660 aa8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 SALL2Q9Y467 1007 aaPredicted RBP8.9□□□□□ -0.98
TMEM39A-212ENST00000497993 PRDM15P57071 1507 aaPredicted RBP8.9□□□□□ -0.99
TMEM39A-212ENST00000497993 ADGRL2O95490 1459 aa8.89□□□□□ -0.99
TMEM39A-212ENST00000497993 NPATQ14207 1427 aa8.89□□□□□ -0.99
TMEM39A-212ENST00000497993 FDX1P10109 184 aa8.89□□□□□ -0.99
TMEM39A-212ENST00000497993 MFAP1P55081 439 aaKnown RBP8.89□□□□□ -0.99
TMEM39A-212ENST00000497993 COPS2P61201 443 aa8.89□□□□□ -0.99
TMEM39A-212ENST00000497993 RSBN1LQ6PCB5 846 aaPredicted RBP8.89□□□□□ -0.99
TMEM39A-212ENST00000497993 PROSER2Q86WR7 435 aaPredicted RBP8.89□□□□□ -0.99
TMEM39A-212ENST00000497993 PCMTD1Q96MG8 357 aaPredicted RBP8.89□□□□□ -0.99
TMEM39A-212ENST00000497993 SLC27A5Q9Y2P5 690 aa8.89□□□□□ -0.99
TMEM39A-212ENST00000497993 DUOX2Q9NRD8 1548 aa8.89□□□□□ -0.99
TMEM39A-212ENST00000497993 STRCQ7RTU9 1775 aa8.89□□□□□ -0.99
TMEM39A-212ENST00000497993 DHX29Q7Z478 1369 aaKnown RBP8.88□□□□□ -0.99
TMEM39A-212ENST00000497993 MYO3AQ8NEV4 1616 aa8.88□□□□□ -0.99
TMEM39A-212ENST00000497993 ZPR1O75312 459 aa8.88□□□□□ -0.99
TMEM39A-212ENST00000497993 NDUFV2P19404 249 aa8.88□□□□□ -0.99
TMEM39A-212ENST00000497993 KCNC4Q03721 635 aa8.88□□□□□ -0.99
TMEM39A-212ENST00000497993 VWDEQ8N2E2 1590 aa8.87□□□□□ -0.99
TMEM39A-212ENST00000497993 ZNF644Q9H582 1327 aaPredicted RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms