RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 AKAP12Q02952 1782 aa24.18■■□□□ 1.46
VIM-208ENST00000497849 BCL9O00512 1426 aa24.18■■□□□ 1.46
VIM-208ENST00000497849 FHDC1Q9C0D6 1143 aaPredicted RBP24.17■■□□□ 1.46
VIM-208ENST00000497849 RAB3GAP2Q9H2M9 1393 aa24.16■■□□□ 1.46
VIM-208ENST00000497849 ZBTB7CA1YPR0 619 aa24.16■■□□□ 1.46
VIM-208ENST00000497849 PPIP5K1Q6PFW1 1433 aa24.16■■□□□ 1.46
VIM-208ENST00000497849 SLIT3O75094 1523 aa24.15■■□□□ 1.46
VIM-208ENST00000497849 SENP3-EIF4A1A0A087X0R7 540 aa24.15■■□□□ 1.46
VIM-208ENST00000497849 TOM1L2Q6ZVM7 507 aa24.15■■□□□ 1.46
VIM-208ENST00000497849 TXNRD1Q16881 649 aa24.14■■□□□ 1.45
VIM-208ENST00000497849 SGIP1Q9BQI5 828 aa24.14■■□□□ 1.45
VIM-208ENST00000497849 SLC15A2Q16348 729 aa24.13■■□□□ 1.45
VIM-208ENST00000497849 STK32BQ9NY57 414 aa24.13■■□□□ 1.45
VIM-208ENST00000497849 AXIN2Q9Y2T1 843 aa24.13■■□□□ 1.45
VIM-208ENST00000497849 C1QTNF8P60827 252 aa24.12■■□□□ 1.45
VIM-208ENST00000497849 BRD4O60885 1362 aaPredicted RBP24.12■■□□□ 1.45
VIM-208ENST00000497849 WDR17Q8IZU2 1322 aa24.11■■□□□ 1.45
VIM-208ENST00000497849 NLRP6P59044 892 aa24.11■■□□□ 1.45
VIM-208ENST00000497849 KIAA1210Q9ULL0 1709 aa24.1■■□□□ 1.45
VIM-208ENST00000497849 MTFR1LQ9H019 292 aa24.1■■□□□ 1.45
VIM-208ENST00000497849 USP6P35125 1406 aa24.1■■□□□ 1.45
VIM-208ENST00000497849 RGPD5Q99666 1765 aa24.09■■□□□ 1.45
VIM-208ENST00000497849 SRPK2P78362 688 aaKnown RBP24.09■■□□□ 1.45
VIM-208ENST00000497849 CDCA7Q9BWT1 371 aaPredicted RBP24.09■■□□□ 1.45
VIM-208ENST00000497849 CABP2Q9NPB3 220 aa24.09■■□□□ 1.45
VIM-208ENST00000497849 PIK3C2AO00443 1686 aa24.08■■□□□ 1.45
VIM-208ENST00000497849 CPSF1Q10570 1443 aaKnown RBP24.05■■□□□ 1.44
VIM-208ENST00000497849 NBPF1Q3BBV0 1214 aa24.05■■□□□ 1.44
VIM-208ENST00000497849 CABP1Q9NZU7 370 aa24.04■■□□□ 1.44
VIM-208ENST00000497849 PAPPAQ13219 1627 aa24.03■■□□□ 1.44
VIM-208ENST00000497849 ARXQ96QS3 562 aa24.03■■□□□ 1.44
VIM-208ENST00000497849 CARD10Q9BWT7 1032 aa24.03■■□□□ 1.44
VIM-208ENST00000497849 MAP3K5Q99683 1374 aa24.03■■□□□ 1.44
VIM-208ENST00000497849 ARHGEF25Q86VW2 580 aa24.02■■□□□ 1.44
VIM-208ENST00000497849 NHSQ6T4R5 1651 aa24.02■■□□□ 1.44
VIM-208ENST00000497849 EXOC5O00471 708 aa24.01■■□□□ 1.43
VIM-208ENST00000497849 CENPJQ9HC77 1338 aaPredicted RBP24.01■■□□□ 1.43
VIM-208ENST00000497849 QRICH2Q9H0J4 1663 aa24■■□□□ 1.43
VIM-208ENST00000497849 TRPM1Q7Z4N2 1603 aa23.99■■□□□ 1.43
VIM-208ENST00000497849 IFFO2Q5TF58 517 aa23.99■■□□□ 1.43
VIM-208ENST00000497849 GOLGB1Q14789 3259 aaKnown RBP23.98■■□□□ 1.43
VIM-208ENST00000497849 CSB-PGBD3P0DP91 1061 aa23.98■■□□□ 1.43
VIM-208ENST00000497849 TNS2Q63HR2 1409 aa23.98■■□□□ 1.43
VIM-208ENST00000497849 CEP350Q5VT06 3117 aa23.95■■□□□ 1.43
VIM-208ENST00000497849 CCDC7Q96M83 1385 aa23.95■■□□□ 1.42
VIM-208ENST00000497849 ACSBG1Q96GR2 724 aa23.95■■□□□ 1.42
VIM-208ENST00000497849 BTAF1O14981 1849 aa23.94■■□□□ 1.42
VIM-208ENST00000497849 SOX12O15370 315 aa23.94■■□□□ 1.42
VIM-208ENST00000497849 ZNF827Q17R98 1081 aa23.94■■□□□ 1.42
VIM-208ENST00000497849 KCNH5Q8NCM2 988 aa23.94■■□□□ 1.42
VIM-208ENST00000497849 NFAT5O94916 1531 aa23.94■■□□□ 1.42
VIM-208ENST00000497849 TTC21BQ7Z4L5 1316 aa23.93■■□□□ 1.42
VIM-208ENST00000497849 GPR162Q16538 588 aa23.93■■□□□ 1.42
VIM-208ENST00000497849 ABCC6O95255 1503 aa23.92■■□□□ 1.42
VIM-208ENST00000497849 COL24A1Q17RW2 1714 aa23.91■■□□□ 1.42
VIM-208ENST00000497849 GIGYF1O75420 1035 aaPredicted RBP23.91■■□□□ 1.42
VIM-208ENST00000497849 LRRC4BQ9NT99 713 aa23.9■■□□□ 1.42
VIM-208ENST00000497849 KAT6BQ8WYB5 2073 aa23.89■■□□□ 1.41
VIM-208ENST00000497849 SHANK3Q9BYB0 1731 aa23.89■■□□□ 1.41
VIM-208ENST00000497849 QSER1Q2KHR3 1735 aa23.88■■□□□ 1.41
VIM-208ENST00000497849 AKT1S1Q96B36 256 aa23.86■■□□□ 1.41
VIM-208ENST00000497849 ZNF692Q9BU19 519 aaPredicted RBP23.86■■□□□ 1.41
VIM-208ENST00000497849 TTC21AQ8NDW8 1320 aa23.85■■□□□ 1.41
VIM-208ENST00000497849 KLHL34Q8N239 644 aa23.85■■□□□ 1.41
VIM-208ENST00000497849 SLC16A10Q8TF71 515 aa23.84■■□□□ 1.41
VIM-208ENST00000497849 EVC2Q86UK5 1308 aa23.84■■□□□ 1.41
VIM-208ENST00000497849 TUBGCP6Q96RT7 1819 aa23.83■■□□□ 1.41
VIM-208ENST00000497849 ERBB3P21860 1342 aa23.83■■□□□ 1.4
VIM-208ENST00000497849 IL2RBP14784 551 aa23.82■■□□□ 1.4
VIM-208ENST00000497849 PELP1Q8IZL8 1130 aaKnown RBP23.82■■□□□ 1.4
VIM-208ENST00000497849 NLGN2Q8NFZ4 835 aa23.82■■□□□ 1.4
VIM-208ENST00000497849 PNPLA7Q6ZV29 1317 aa23.82■■□□□ 1.4
VIM-208ENST00000497849 NLRP2Q9NX02 1062 aa23.81■■□□□ 1.4
VIM-208ENST00000497849 POLD1P28340 1107 aa23.8■■□□□ 1.4
VIM-208ENST00000497849 LTN1O94822 1766 aa23.8■■□□□ 1.4
VIM-208ENST00000497849 MON2Q7Z3U7 1717 aa23.79■■□□□ 1.4
VIM-208ENST00000497849 USP54Q70EL1 1684 aa23.78■■□□□ 1.4
VIM-208ENST00000497849 KTN1Q86UP2 1357 aaKnown RBP23.78■■□□□ 1.4
VIM-208ENST00000497849 SLC27A3Q5K4L6 730 aa23.77■■□□□ 1.4
VIM-208ENST00000497849 YBX3P16989 372 aaKnown RBP eCLIP23.76■■□□□ 1.397e-14■■□□□ 11.7
VIM-208ENST00000497849 USP31Q70CQ4 1352 aa23.76■■□□□ 1.39
VIM-208ENST00000497849 KCNQ4P56696 695 aa23.74■■□□□ 1.39
VIM-208ENST00000497849 ANKRD24Q8TF21 1146 aa23.73■■□□□ 1.39
VIM-208ENST00000497849 TFCP2L1Q9NZI6 479 aa23.73■■□□□ 1.39
VIM-208ENST00000497849 LY75O60449 1722 aa23.73■■□□□ 1.39
VIM-208ENST00000497849 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.72■■□□□ 1.39
VIM-208ENST00000497849 GRIN3BO60391 1043 aa23.71■■□□□ 1.39
VIM-208ENST00000497849 NME9Q86XW9 330 aa23.7■■□□□ 1.38
VIM-208ENST00000497849 ATP10DQ9P241 1426 aa23.69■■□□□ 1.38
VIM-208ENST00000497849 DDX54Q8TDD1 881 aaKnown RBP23.69■■□□□ 1.38
VIM-208ENST00000497849 CD163L1Q9NR16 1453 aa23.68■■□□□ 1.38
VIM-208ENST00000497849 DOT1LQ8TEK3 1739 aa23.67■■□□□ 1.38
VIM-208ENST00000497849 SBNO2Q9Y2G9 1366 aa23.67■■□□□ 1.38
VIM-208ENST00000497849 NSD2O96028 1365 aa23.66■■□□□ 1.38
VIM-208ENST00000497849 L3MBTL2Q969R5 705 aa23.66■■□□□ 1.38
VIM-208ENST00000497849 ANKRD36BQ8N2N9 1353 aa23.65■■□□□ 1.38
VIM-208ENST00000497849 PRIM1P49642 420 aaKnown RBP23.65■■□□□ 1.38
VIM-208ENST00000497849 COL23A1Q86Y22 540 aaPredicted RBP23.64■■□□□ 1.37
VIM-208ENST00000497849 SYTL4Q96C24 671 aaPredicted RBP23.64■■□□□ 1.37
VIM-208ENST00000497849 FAM208AQ9UK61 1670 aaKnown RBP23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms