RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 LRRC37A3O60309 1634 aa22.1■■□□□ 1.13
HDAC4-213ENST00000496347 OVOS2A0A0J9YW53 1432 aa22.1■■□□□ 1.13
HDAC4-213ENST00000496347 OVOS2Q6IE36 1432 aa22.1■■□□□ 1.13
HDAC4-213ENST00000496347 SLC12A5Q9H2X9 1139 aa22.1■■□□□ 1.13
HDAC4-213ENST00000496347 SF3B2Q13435 895 aaKnown RBP22.09■■□□□ 1.13
HDAC4-213ENST00000496347 ARHGEF25Q86VW2 580 aa22.09■■□□□ 1.13
HDAC4-213ENST00000496347 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.08■■□□□ 1.13
HDAC4-213ENST00000496347 USP35Q9P2H5 1018 aa22.08■■□□□ 1.13
HDAC4-213ENST00000496347 ANKRD36BQ8N2N9 1353 aa22.08■■□□□ 1.12
HDAC4-213ENST00000496347 ZBTB7CA1YPR0 619 aa22.07■■□□□ 1.12
HDAC4-213ENST00000496347 TMF1P82094 1093 aa22.07■■□□□ 1.12
HDAC4-213ENST00000496347 MYOM1P52179 1685 aa22.07■■□□□ 1.12
HDAC4-213ENST00000496347 WDR17Q8IZU2 1322 aa22.06■■□□□ 1.12
HDAC4-213ENST00000496347 DISP2A7MBM2 1401 aa22.06■■□□□ 1.12
HDAC4-213ENST00000496347 NME9Q86XW9 330 aa22.06■■□□□ 1.12
HDAC4-213ENST00000496347 SOX12O15370 315 aa22.04■■□□□ 1.12
HDAC4-213ENST00000496347 CDCA8Q53HL2 280 aa22.04■■□□□ 1.12
HDAC4-213ENST00000496347 FAM208AQ9UK61 1670 aaKnown RBP22.04■■□□□ 1.12
HDAC4-213ENST00000496347 KIF20BQ96Q89 1820 aa22.03■■□□□ 1.12
HDAC4-213ENST00000496347 PEAK1Q9H792 1746 aa22.03■■□□□ 1.12
HDAC4-213ENST00000496347 AXIN2Q9Y2T1 843 aa22.02■■□□□ 1.12
HDAC4-213ENST00000496347 BAG6P46379 1132 aa22.01■■□□□ 1.11
HDAC4-213ENST00000496347 FAM196AQ6ZSG2 479 aa22.01■■□□□ 1.11
HDAC4-213ENST00000496347 TOM1L2Q6ZVM7 507 aa22.01■■□□□ 1.11
HDAC4-213ENST00000496347 CCER1Q8TC90 406 aaPredicted RBP22.01■■□□□ 1.11
HDAC4-213ENST00000496347 DEFB132Q7Z7B7 95 aa22■■□□□ 1.11
HDAC4-213ENST00000496347 ZRANB1Q9UGI0 708 aa22■■□□□ 1.11
HDAC4-213ENST00000496347 PDE3BQ13370 1112 aa21.99■■□□□ 1.11
HDAC4-213ENST00000496347 CCDC7Q96M83 1385 aa21.99■■□□□ 1.11
HDAC4-213ENST00000496347 OVOS2A0A0G2JMS6 1433 aa21.98■■□□□ 1.11
HDAC4-213ENST00000496347 FAM182BQ5T319 152 aa21.98■■□□□ 1.11
HDAC4-213ENST00000496347 CDCA7Q9BWT1 371 aaPredicted RBP21.98■■□□□ 1.11
HDAC4-213ENST00000496347 C11orf95C9JLR9 678 aaPredicted RBP21.97■■□□□ 1.11
HDAC4-213ENST00000496347 CARD10Q9BWT7 1032 aa21.97■■□□□ 1.11
HDAC4-213ENST00000496347 ERBB3P21860 1342 aa21.97■■□□□ 1.11
HDAC4-213ENST00000496347 RGPD3A6NKT7 1758 aaPredicted RBP21.97■■□□□ 1.11
HDAC4-213ENST00000496347 RGPD4Q7Z3J3 1758 aa21.97■■□□□ 1.11
HDAC4-213ENST00000496347 CSB-PGBD3P0DP91 1061 aa21.96■■□□□ 1.11
HDAC4-213ENST00000496347 SBF2Q86WG5 1849 aa21.96■■□□□ 1.11
HDAC4-213ENST00000496347 PARD3Q8TEW0 1356 aa21.96■■□□□ 1.11
HDAC4-213ENST00000496347 TNS2Q63HR2 1409 aa21.95■■□□□ 1.1
HDAC4-213ENST00000496347 RREB1Q92766 1687 aa21.95■■□□□ 1.1
HDAC4-213ENST00000496347 COG3Q96JB2 828 aa21.94■■□□□ 1.1
HDAC4-213ENST00000496347 BCL9O00512 1426 aa21.93■■□□□ 1.1
HDAC4-213ENST00000496347 RTL1A6NKG5 1358 aa21.92■■□□□ 1.1
HDAC4-213ENST00000496347 DDB1Q16531 1140 aa21.92■■□□□ 1.1
HDAC4-213ENST00000496347 TRIM37O94972 964 aa21.91■■□□□ 1.1
HDAC4-213ENST00000496347 NUP188Q5SRE5 1749 aa21.89■■□□□ 1.1
HDAC4-213ENST00000496347 EN1Q05925 392 aaPredicted RBP21.88■■□□□ 1.09
HDAC4-213ENST00000496347 NSD3Q9BZ95 1437 aa21.88■■□□□ 1.09
HDAC4-213ENST00000496347 LRP5O75197 1615 aa21.88■■□□□ 1.09
HDAC4-213ENST00000496347 ANKRD26Q9UPS8 1709 aa21.87■■□□□ 1.09
HDAC4-213ENST00000496347 ANKRD24Q8TF21 1146 aa21.87■■□□□ 1.09
HDAC4-213ENST00000496347 IP6K1Q92551 441 aa21.87■■□□□ 1.09
HDAC4-213ENST00000496347 MAP3K19Q56UN5 1328 aa21.86■■□□□ 1.09
HDAC4-213ENST00000496347 EIF4G2P78344 907 aaKnown RBP eCLIP21.86■■□□□ 1.09
HDAC4-213ENST00000496347 FYB1O15117 783 aa21.85■■□□□ 1.09
HDAC4-213ENST00000496347 NLRP2Q9NX02 1062 aa21.85■■□□□ 1.09
HDAC4-213ENST00000496347 NHSQ6T4R5 1651 aa21.85■■□□□ 1.09
HDAC4-213ENST00000496347 KIF24Q5T7B8 1368 aa21.84■■□□□ 1.09
HDAC4-213ENST00000496347 APBA3O96018 575 aa21.83■■□□□ 1.09
HDAC4-213ENST00000496347 CAMKK2Q96RR4 588 aa21.83■■□□□ 1.09
HDAC4-213ENST00000496347 RGPD2P0DJD1 1756 aa21.82■■□□□ 1.08
HDAC4-213ENST00000496347 HOXC9P31274 260 aa21.82■■□□□ 1.08
HDAC4-213ENST00000496347 GGNBP2Q9H3C7 697 aa21.82■■□□□ 1.08
HDAC4-213ENST00000496347 SMG6Q86US8 1419 aaKnown RBP21.81■■□□□ 1.08
HDAC4-213ENST00000496347 IL2RBP14784 551 aa21.81■■□□□ 1.08
HDAC4-213ENST00000496347 MARCH10Q8NA82 808 aaPredicted RBP21.81■■□□□ 1.08
HDAC4-213ENST00000496347 EXOC5O00471 708 aa21.8■■□□□ 1.08
HDAC4-213ENST00000496347 AMPHP49418 695 aa21.8■■□□□ 1.08
HDAC4-213ENST00000496347 EZH2Q15910 746 aaKnown RBP21.8■■□□□ 1.08
HDAC4-213ENST00000496347 CGNL1Q0VF96 1302 aa21.8■■□□□ 1.08
HDAC4-213ENST00000496347 FLT4P35916 1363 aa21.79■■□□□ 1.08
HDAC4-213ENST00000496347 HSPA5P11021 654 aaKnown RBP21.79■■□□□ 1.08
HDAC4-213ENST00000496347 CARD14Q9BXL6 1004 aa21.79■■□□□ 1.08
HDAC4-213ENST00000496347 BCL11BQ9C0K0 894 aaPredicted RBP21.78■■□□□ 1.08
HDAC4-213ENST00000496347 SHANK3Q9BYB0 1731 aa21.77■■□□□ 1.08
HDAC4-213ENST00000496347 RRS1Q15050 365 aaKnown RBP21.76■■□□□ 1.07
HDAC4-213ENST00000496347 INSRP06213 1382 aa21.75■■□□□ 1.07
HDAC4-213ENST00000496347 LTV1Q96GA3 475 aaPredicted RBP21.75■■□□□ 1.07
HDAC4-213ENST00000496347 MEGF6O75095 1541 aa21.74■■□□□ 1.07
HDAC4-213ENST00000496347 BTAF1O14981 1849 aa21.73■■□□□ 1.07
HDAC4-213ENST00000496347 PSDA5PKW4 1024 aaPredicted RBP21.73■■□□□ 1.07
HDAC4-213ENST00000496347 PLSCR1O15162 318 aa21.73■■□□□ 1.07
HDAC4-213ENST00000496347 FBLN1P23142 703 aa21.73■■□□□ 1.07
HDAC4-213ENST00000496347 MAP2P11137 1827 aaKnown RBP21.73■■□□□ 1.07
HDAC4-213ENST00000496347 NSD2O96028 1365 aa21.72■■□□□ 1.07
HDAC4-213ENST00000496347 POLR3GLQ9BT43 218 aa21.71■■□□□ 1.07
HDAC4-213ENST00000496347 DOT1LQ8TEK3 1739 aa21.71■■□□□ 1.07
HDAC4-213ENST00000496347 R3HDM1Q15032 1099 aaKnown RBP21.7■■□□□ 1.06
HDAC4-213ENST00000496347 KAT6BQ8WYB5 2073 aa21.7■■□□□ 1.06
HDAC4-213ENST00000496347 NCAPD2Q15021 1401 aa21.69■■□□□ 1.06
HDAC4-213ENST00000496347 NBPF14Q5TI25 921 aa21.68■■□□□ 1.06
HDAC4-213ENST00000496347 PTF1AQ7RTS3 328 aa21.68■■□□□ 1.06
HDAC4-213ENST00000496347 PKD1L3Q7Z443 1732 aa21.68■■□□□ 1.06
HDAC4-213ENST00000496347 HSP90AB2PQ58FF8 381 aa21.66■■□□□ 1.06
HDAC4-213ENST00000496347 NBPF6Q5VWK0 638 aa21.65■■□□□ 1.06
HDAC4-213ENST00000496347 NBPF4Q96M43 638 aa21.65■■□□□ 1.06
HDAC4-213ENST00000496347 EMILIN1Q9Y6C2 1016 aa21.65■■□□□ 1.06
HDAC4-213ENST00000496347 PAPPAQ13219 1627 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms