RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 IER5LQ5T953 404 aa9.09□□□□□ -0.95
USP39-219ENST00000496047 PAXIP1Q6ZW49 1069 aaPredicted RBP9.09□□□□□ -0.95
USP39-219ENST00000496047 CDAN1Q8IWY9 1227 aa9.09□□□□□ -0.95
USP39-219ENST00000496047 CARD14Q9BXL6 1004 aa9.09□□□□□ -0.95
USP39-219ENST00000496047 PNNQ9H307 717 aaKnown RBP9.09□□□□□ -0.95
USP39-219ENST00000496047 NALCNQ8IZF0 1738 aa9.08□□□□□ -0.96
USP39-219ENST00000496047 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.08□□□□□ -0.96
USP39-219ENST00000496047 EDC4Q6P2E9 1401 aaKnown RBP9.08□□□□□ -0.96
USP39-219ENST00000496047 NEFMP07197 916 aa9.08□□□□□ -0.96
USP39-219ENST00000496047 GOLGA2Q08379 1002 aa9.08□□□□□ -0.96
USP39-219ENST00000496047 ZNF467Q7Z7K2 595 aaPredicted RBP9.08□□□□□ -0.96
USP39-219ENST00000496047 THEMISQ8N1K5 641 aaPredicted RBP9.08□□□□□ -0.96
USP39-219ENST00000496047 CFAP44Q96MT7 982 aa9.08□□□□□ -0.96
USP39-219ENST00000496047 CDK19Q9BWU1 502 aa9.08□□□□□ -0.96
USP39-219ENST00000496047 RCAN3Q9UKA8 241 aa9.08□□□□□ -0.96
USP39-219ENST00000496047 ADAMTS8Q9UP79 889 aa9.08□□□□□ -0.96
USP39-219ENST00000496047 SALL2Q9Y467 1007 aaPredicted RBP9.08□□□□□ -0.96
USP39-219ENST00000496047 DLG5Q8TDM6 1919 aa9.07□□□□□ -0.96
USP39-219ENST00000496047 PTCH1Q13635 1447 aa9.07□□□□□ -0.96
USP39-219ENST00000496047 PPIP5K1Q6PFW1 1433 aa9.07□□□□□ -0.96
USP39-219ENST00000496047 PYGBP11216 843 aa9.07□□□□□ -0.96
USP39-219ENST00000496047 SLAIN1Q8ND83 568 aa9.07□□□□□ -0.96
USP39-219ENST00000496047 SGIP1Q9BQI5 828 aa9.07□□□□□ -0.96
USP39-219ENST00000496047 RNF123Q5XPI4 1314 aa9.06□□□□□ -0.96
USP39-219ENST00000496047 HSPA1LP34931 641 aa9.06□□□□□ -0.96
USP39-219ENST00000496047 RRP1P56182 461 aaKnown RBP9.06□□□□□ -0.96
USP39-219ENST00000496047 IRX6P78412 446 aaPredicted RBP9.06□□□□□ -0.96
USP39-219ENST00000496047 RYDENQ9NUL5 291 aaKnown RBP9.06□□□□□ -0.96
USP39-219ENST00000496047 CD163L1Q9NR16 1453 aa9.06□□□□□ -0.96
USP39-219ENST00000496047 ADAMTS13Q76LX8 1427 aa9.05□□□□□ -0.96
USP39-219ENST00000496047 NKTRP30414 1462 aaKnown RBP9.05□□□□□ -0.96
USP39-219ENST00000496047 METP08581 1390 aa9.05□□□□□ -0.96
USP39-219ENST00000496047 PIK3R4Q99570 1358 aa9.05□□□□□ -0.96
USP39-219ENST00000496047 E9PSI1 815 aa9.05□□□□□ -0.96
USP39-219ENST00000496047 WASLO00401 505 aaPredicted RBP9.05□□□□□ -0.96
USP39-219ENST00000496047 STK25O00506 426 aa9.05□□□□□ -0.96
USP39-219ENST00000496047 TXNDC2Q86VQ3 553 aa9.05□□□□□ -0.96
USP39-219ENST00000496047 RNF25Q96BH1 459 aaPredicted RBP9.05□□□□□ -0.96
USP39-219ENST00000496047 RUNDC1Q96C34 613 aa9.05□□□□□ -0.96
USP39-219ENST00000496047 MAPK8IP3Q9UPT6 1336 aa9.05□□□□□ -0.96
USP39-219ENST00000496047 PLCG2P16885 1265 aa9.04□□□□□ -0.96
USP39-219ENST00000496047 TNNT2P45379 298 aaPredicted RBP9.04□□□□□ -0.96
USP39-219ENST00000496047 IFNL1Q8IU54 200 aa9.04□□□□□ -0.96
USP39-219ENST00000496047 CCDC136Q96JN2 1154 aa9.04□□□□□ -0.96
USP39-219ENST00000496047 TMEM106CQ9BVX2 250 aa9.04□□□□□ -0.96
USP39-219ENST00000496047 USP54Q70EL1 1684 aa9.04□□□□□ -0.96
USP39-219ENST00000496047 CDK12Q9NYV4 1490 aaPredicted RBP9.03□□□□□ -0.96
USP39-219ENST00000496047 PLEKHH1Q9ULM0 1364 aa9.03□□□□□ -0.96
USP39-219ENST00000496047 MTHFSP49914 203 aa9.03□□□□□ -0.96
USP39-219ENST00000496047 VSIG10Q8N0Z9 540 aa9.03□□□□□ -0.96
USP39-219ENST00000496047 CPSF1Q10570 1443 aaKnown RBP9.03□□□□□ -0.96
USP39-219ENST00000496047 STRCQ7RTU9 1775 aa9.02□□□□□ -0.97
USP39-219ENST00000496047 WAPLQ7Z5K2 1190 aa9.02□□□□□ -0.97
USP39-219ENST00000496047 CCDC146Q8IYE0 955 aa9.02□□□□□ -0.97
USP39-219ENST00000496047 CABP1Q9NZU7 370 aa9.02□□□□□ -0.97
USP39-219ENST00000496047 TBX22Q9Y458 520 aa9.02□□□□□ -0.97
USP39-219ENST00000496047 VIRMAQ69YN4 1812 aaKnown RBP9.02□□□□□ -0.97
USP39-219ENST00000496047 COL3A1P02461 1466 aaPredicted RBP9.02□□□□□ -0.97
USP39-219ENST00000496047 LRRC7Q96NW7 1537 aa9.01□□□□□ -0.97
USP39-219ENST00000496047 APAF1O14727 1248 aa9.01□□□□□ -0.97
USP39-219ENST00000496047 ST18O60284 1047 aa9.01□□□□□ -0.97
USP39-219ENST00000496047 U2AF1L5P0DN76 240 aaPredicted RBP9.01□□□□□ -0.97
USP39-219ENST00000496047 U2AF1Q01081 240 aaKnown RBP eCLIP9.01□□□□□ -0.97
USP39-219ENST00000496047 ANKARQ7Z5J8 1434 aa9.01□□□□□ -0.97
USP39-219ENST00000496047 NUDT16Q96DE0 195 aaKnown RBP9.01□□□□□ -0.97
USP39-219ENST00000496047 GGNBP2Q9H3C7 697 aa9.01□□□□□ -0.97
USP39-219ENST00000496047 ZNF521Q96K83 1311 aa9.01□□□□□ -0.97
USP39-219ENST00000496047 LTN1O94822 1766 aa9□□□□□ -0.97
USP39-219ENST00000496047 SENP3-EIF4A1A0A087X0R7 540 aa9□□□□□ -0.97
USP39-219ENST00000496047 CEBPAP49715 358 aaPredicted RBP9□□□□□ -0.97
USP39-219ENST00000496047 COG3Q96JB2 828 aa9□□□□□ -0.97
USP39-219ENST00000496047 MYH16Q9H6N6 1097 aa9□□□□□ -0.97
USP39-219ENST00000496047 AATKQ6ZMQ8 1374 aa8.99□□□□□ -0.97
USP39-219ENST00000496047 ROBO2Q9HCK4 1378 aa8.99□□□□□ -0.97
USP39-219ENST00000496047 U2SURPO15042 1029 aaKnown RBP8.99□□□□□ -0.97
USP39-219ENST00000496047 FYB1O15117 783 aa8.99□□□□□ -0.97
USP39-219ENST00000496047 DIAPH1O60610 1272 aaKnown RBP8.99□□□□□ -0.97
USP39-219ENST00000496047 SLFN5Q08AF3 891 aa8.99□□□□□ -0.97
USP39-219ENST00000496047 CCDC27Q2M243 656 aa8.99□□□□□ -0.97
USP39-219ENST00000496047 WDR63Q8IWG1 891 aa8.99□□□□□ -0.97
USP39-219ENST00000496047 STK24Q9Y6E0 443 aa8.99□□□□□ -0.97
USP39-219ENST00000496047 KIF1AQ12756 1690 aa8.99□□□□□ -0.97
USP39-219ENST00000496047 CACNA1FO60840 1977 aa8.99□□□□□ -0.97
USP39-219ENST00000496047 CANXP27824 592 aaKnown RBP8.98□□□□□ -0.97
USP39-219ENST00000496047 PDAP1Q13442 181 aaKnown RBP8.98□□□□□ -0.97
USP39-219ENST00000496047 DUSP27Q5VZP5 1158 aa8.98□□□□□ -0.97
USP39-219ENST00000496047 ANKLE2Q86XL3 938 aa8.98□□□□□ -0.97
USP39-219ENST00000496047 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.98□□□□□ -0.97
USP39-219ENST00000496047 CDCA7LQ96GN5 454 aa8.98□□□□□ -0.97
USP39-219ENST00000496047 RGS17Q9UGC6 210 aaPredicted RBP8.98□□□□□ -0.97
USP39-219ENST00000496047 TTC21AQ8NDW8 1320 aa8.98□□□□□ -0.97
USP39-219ENST00000496047 USP6P35125 1406 aa8.97□□□□□ -0.97
USP39-219ENST00000496047 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.97□□□□□ -0.97
USP39-219ENST00000496047 LTKP29376 864 aa8.97□□□□□ -0.97
USP39-219ENST00000496047 CALD1Q05682 793 aaKnown RBP8.97□□□□□ -0.97
USP39-219ENST00000496047 B4GALNT3Q6L9W6 998 aa8.97□□□□□ -0.97
USP39-219ENST00000496047 TCP11L2Q8N4U5 519 aa8.97□□□□□ -0.97
USP39-219ENST00000496047 ZFP91Q96JP5 570 aaPredicted RBP8.97□□□□□ -0.97
USP39-219ENST00000496047 BCL11BQ9C0K0 894 aaPredicted RBP8.97□□□□□ -0.97
USP39-219ENST00000496047 AMOTL2Q9Y2J4 779 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 177.3 ms