RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 GJD4Q96KN9 370 aaPredicted RBP26.63■■□□□ 1.85
HDAC4-212ENST00000495497 TNNT2P45379 298 aaPredicted RBP26.62■■□□□ 1.85
HDAC4-212ENST00000495497 MAP3K19Q56UN5 1328 aa26.62■■□□□ 1.85
HDAC4-212ENST00000495497 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.62■■□□□ 1.85
HDAC4-212ENST00000495497 COL18A1P39060 1754 aa26.61■■□□□ 1.85
HDAC4-212ENST00000495497 CNGB1Q14028 1251 aaPredicted RBP26.61■■□□□ 1.85
HDAC4-212ENST00000495497 LARP1Q6PKG0 1096 aaKnown RBP26.6■■□□□ 1.85
HDAC4-212ENST00000495497 COL5A2P05997 1499 aaPredicted RBP26.58■■□□□ 1.85
HDAC4-212ENST00000495497 AMPHP49418 695 aa26.58■■□□□ 1.85
HDAC4-212ENST00000495497 CC2D1BQ5T0F9 858 aaKnown RBP26.58■■□□□ 1.85
HDAC4-212ENST00000495497 MORC1Q86VD1 984 aa26.58■■□□□ 1.85
HDAC4-212ENST00000495497 NSD2O96028 1365 aa26.58■■□□□ 1.84
HDAC4-212ENST00000495497 LTN1O94822 1766 aa26.56■■□□□ 1.84
HDAC4-212ENST00000495497 IP6K1Q92551 441 aa26.56■■□□□ 1.84
HDAC4-212ENST00000495497 USP35Q9P2H5 1018 aa26.56■■□□□ 1.84
HDAC4-212ENST00000495497 EMILIN1Q9Y6C2 1016 aa26.56■■□□□ 1.84
HDAC4-212ENST00000495497 SPATA31A5Q5VU36 1347 aa26.56■■□□□ 1.84
HDAC4-212ENST00000495497 SPATA31A7Q8IWB4 1347 aa26.56■■□□□ 1.84
HDAC4-212ENST00000495497 GLI3P10071 1580 aa26.55■■□□□ 1.84
HDAC4-212ENST00000495497 HOXC9P31274 260 aa26.55■■□□□ 1.84
HDAC4-212ENST00000495497 DDX10Q13206 875 aaKnown RBP26.55■■□□□ 1.84
HDAC4-212ENST00000495497 CSB-PGBD3P0DP91 1061 aa26.53■■□□□ 1.84
HDAC4-212ENST00000495497 ANKRD24Q8TF21 1146 aa26.53■■□□□ 1.84
HDAC4-212ENST00000495497 LTV1Q96GA3 475 aaPredicted RBP26.53■■□□□ 1.84
HDAC4-212ENST00000495497 SPATA31A1Q5TZJ5 1347 aa26.53■■□□□ 1.84
HDAC4-212ENST00000495497 RGPD5Q99666 1765 aa26.53■■□□□ 1.84
HDAC4-212ENST00000495497 PPM1GO15355 546 aaPredicted RBP26.52■■□□□ 1.84
HDAC4-212ENST00000495497 TOM1L2Q6ZVM7 507 aa26.52■■□□□ 1.84
HDAC4-212ENST00000495497 ANKRD26Q9UPS8 1709 aa26.52■■□□□ 1.84
HDAC4-212ENST00000495497 ABCC6O95255 1503 aa26.51■■□□□ 1.83
HDAC4-212ENST00000495497 RGS12O14924 1447 aa26.51■■□□□ 1.83
HDAC4-212ENST00000495497 WDR17Q8IZU2 1322 aa26.51■■□□□ 1.83
HDAC4-212ENST00000495497 FAM98CQ17RN3 349 aaKnown RBP26.51■■□□□ 1.83
HDAC4-212ENST00000495497 POLKQ9UBT6 870 aa26.51■■□□□ 1.83
HDAC4-212ENST00000495497 ZNF316A6NFI3 1004 aaPredicted RBP26.5■■□□□ 1.83
HDAC4-212ENST00000495497 ERBB3P21860 1342 aa26.49■■□□□ 1.83
HDAC4-212ENST00000495497 HSP90AB2PQ58FF8 381 aa26.49■■□□□ 1.83
HDAC4-212ENST00000495497 CRB1P82279 1406 aa26.48■■□□□ 1.83
HDAC4-212ENST00000495497 PEAK1Q9H792 1746 aa26.48■■□□□ 1.83
HDAC4-212ENST00000495497 RTL1A6NKG5 1358 aa26.48■■□□□ 1.83
HDAC4-212ENST00000495497 BLMP54132 1417 aaPredicted RBP26.48■■□□□ 1.83
HDAC4-212ENST00000495497 CDK12Q9NYV4 1490 aaPredicted RBP26.47■■□□□ 1.83
HDAC4-212ENST00000495497 NPC1L1Q9UHC9 1359 aa26.46■■□□□ 1.83
HDAC4-212ENST00000495497 SEPT12Q8IYM1 358 aa26.46■■□□□ 1.83
HDAC4-212ENST00000495497 FLT4P35916 1363 aa26.46■■□□□ 1.83
HDAC4-212ENST00000495497 A0A0G2JS52 829 aa26.45■■□□□ 1.82
HDAC4-212ENST00000495497 ONECUT3O60422 494 aaPredicted RBP26.45■■□□□ 1.82
HDAC4-212ENST00000495497 MYT1Q01538 1121 aa26.45■■□□□ 1.82
HDAC4-212ENST00000495497 TCP11L2Q8N4U5 519 aa26.45■■□□□ 1.82
HDAC4-212ENST00000495497 NLRP2Q9NX02 1062 aa26.45■■□□□ 1.82
HDAC4-212ENST00000495497 CARD10Q9BWT7 1032 aa26.43■■□□□ 1.82
HDAC4-212ENST00000495497 INSRP06213 1382 aa26.43■■□□□ 1.82
HDAC4-212ENST00000495497 KIF24Q5T7B8 1368 aa26.42■■□□□ 1.82
HDAC4-212ENST00000495497 MAP2P11137 1827 aaKnown RBP26.42■■□□□ 1.82
HDAC4-212ENST00000495497 BARGINQ6ZT62 677 aa26.41■■□□□ 1.82
HDAC4-212ENST00000495497 THRAP3Q9Y2W1 955 aaKnown RBP26.4■■□□□ 1.82
HDAC4-212ENST00000495497 SMG6Q86US8 1419 aaKnown RBP26.38■■□□□ 1.81
HDAC4-212ENST00000495497 NBPF6Q5VWK0 638 aa26.37■■□□□ 1.81
HDAC4-212ENST00000495497 USHBP1Q8N6Y0 703 aa26.37■■□□□ 1.81
HDAC4-212ENST00000495497 NBPF4Q96M43 638 aa26.37■■□□□ 1.81
HDAC4-212ENST00000495497 MTHFSP49914 203 aa26.36■■□□□ 1.81
HDAC4-212ENST00000495497 THSD7AQ9UPZ6 1657 aa26.34■■□□□ 1.81
HDAC4-212ENST00000495497 EIF4A2Q14240 407 aaKnown RBP26.34■■□□□ 1.81
HDAC4-212ENST00000495497 KRT27Q7Z3Y8 459 aa26.32■■□□□ 1.8
HDAC4-212ENST00000495497 FAM182BQ5T319 152 aa26.31■■□□□ 1.8
HDAC4-212ENST00000495497 DISP2A7MBM2 1401 aa26.31■■□□□ 1.8
HDAC4-212ENST00000495497 RGPD2P0DJD1 1756 aa26.3■■□□□ 1.8
HDAC4-212ENST00000495497 PPP2R1AP30153 589 aa26.3■■□□□ 1.8
HDAC4-212ENST00000495497 BRWD3Q6RI45 1802 aa26.3■■□□□ 1.8
HDAC4-212ENST00000495497 IL2RBP14784 551 aa26.29■■□□□ 1.8
HDAC4-212ENST00000495497 EYA1Q99502 592 aa26.29■■□□□ 1.8
HDAC4-212ENST00000495497 CDCA7Q9BWT1 371 aaPredicted RBP26.28■■□□□ 1.8
HDAC4-212ENST00000495497 PARD3Q8TEW0 1356 aa26.28■■□□□ 1.8
HDAC4-212ENST00000495497 DDB1Q16531 1140 aa26.27■■□□□ 1.8
HDAC4-212ENST00000495497 FAM208AQ9UK61 1670 aaKnown RBP26.27■■□□□ 1.8
HDAC4-212ENST00000495497 PDE3BQ13370 1112 aa26.26■■□□□ 1.79
HDAC4-212ENST00000495497 SOCS7O14512 581 aa26.25■■□□□ 1.79
HDAC4-212ENST00000495497 IL13P35225 146 aa26.25■■□□□ 1.79
HDAC4-212ENST00000495497 WNK3Q9BYP7 1800 aa26.23■■□□□ 1.79
HDAC4-212ENST00000495497 PARP4Q9UKK3 1724 aaKnown RBP26.23■■□□□ 1.79
HDAC4-212ENST00000495497 EXOC5O00471 708 aa26.23■■□□□ 1.79
HDAC4-212ENST00000495497 LRRC37A3O60309 1634 aa26.22■■□□□ 1.79
HDAC4-212ENST00000495497 MEGF6O75095 1541 aa26.22■■□□□ 1.79
HDAC4-212ENST00000495497 RALBP1Q15311 655 aa26.21■■□□□ 1.79
HDAC4-212ENST00000495497 IGSF1Q8N6C5 1336 aa26.2■■□□□ 1.79
HDAC4-212ENST00000495497 DIAPH1O60610 1272 aaKnown RBP26.2■■□□□ 1.78
HDAC4-212ENST00000495497 MARCH10Q8NA82 808 aaPredicted RBP26.2■■□□□ 1.78
HDAC4-212ENST00000495497 RAPGEF4Q8WZA2 1011 aa26.2■■□□□ 1.78
HDAC4-212ENST00000495497 TATP17735 454 aaPredicted RBP26.19■■□□□ 1.78
HDAC4-212ENST00000495497 NCAPD2Q15021 1401 aa26.19■■□□□ 1.78
HDAC4-212ENST00000495497 COL3A1P02461 1466 aaPredicted RBP26.18■■□□□ 1.78
HDAC4-212ENST00000495497 AEBP1Q8IUX7 1158 aa26.18■■□□□ 1.78
HDAC4-212ENST00000495497 UPF1Q92900 1129 aaKnown RBP eCLIP26.18■■□□□ 1.78
HDAC4-212ENST00000495497 TNS2Q63HR2 1409 aa26.17■■□□□ 1.78
HDAC4-212ENST00000495497 CFAP53Q96M91 514 aa26.16■■□□□ 1.78
HDAC4-212ENST00000495497 PRKRIP1Q9H875 184 aaPredicted RBP26.16■■□□□ 1.78
HDAC4-212ENST00000495497 OVOS2A0A0G2JMS6 1433 aa26.15■■□□□ 1.78
HDAC4-212ENST00000495497 SULT6B1Q6IMI4 303 aa26.15■■□□□ 1.78
HDAC4-212ENST00000495497 ZCRB1Q8TBF4 217 aaKnown RBP26.15■■□□□ 1.78
HDAC4-212ENST00000495497 DDX54Q8TDD1 881 aaKnown RBP26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms