RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 TRMT44Q8IYL2 757 aaKnown RBP10.75□□□□□ -0.69
SMC4-223ENST00000493695 PROCA1Q8NCQ7 364 aaPredicted RBP10.75□□□□□ -0.69
SMC4-223ENST00000493695 PGPEP1Q9NXJ5 209 aa10.75□□□□□ -0.69
SMC4-223ENST00000493695 FKBPLQ9UIM3 349 aa10.75□□□□□ -0.69
SMC4-223ENST00000493695 DDRGK1Q96HY6 314 aa10.74□□□□□ -0.69
SMC4-223ENST00000493695 FAM117AQ9C073 453 aa10.74□□□□□ -0.69
SMC4-223ENST00000493695 PDXDC2PQ6P474 469 aa10.73□□□□□ -0.69
SMC4-223ENST00000493695 FIGNL2A6NMB9 653 aa10.72□□□□□ -0.69
SMC4-223ENST00000493695 RAB15P59190 212 aa10.72□□□□□ -0.69
SMC4-223ENST00000493695 CBLBQ13191 982 aa10.72□□□□□ -0.69
SMC4-223ENST00000493695 PPP1R26Q5T8A7 1209 aaPredicted RBP10.72□□□□□ -0.69
SMC4-223ENST00000493695 KCTD15Q96SI1 283 aaPredicted RBP10.72□□□□□ -0.69
SMC4-223ENST00000493695 SH3D19Q5HYK7 790 aa10.71□□□□□ -0.69
SMC4-223ENST00000493695 DNMT3LQ9UJW3 386 aa10.71□□□□□ -0.69
SMC4-223ENST00000493695 SOS2Q07890 1332 aaPredicted RBP10.7□□□□□ -0.7
SMC4-223ENST00000493695 TTLL8A6PVC2 850 aa10.7□□□□□ -0.7
SMC4-223ENST00000493695 PPFIA3O75145 1194 aa10.7□□□□□ -0.7
SMC4-223ENST00000493695 PTK2Q05397 1052 aa10.7□□□□□ -0.7
SMC4-223ENST00000493695 PNMA1Q8ND90 353 aa10.69□□□□□ -0.7
SMC4-223ENST00000493695 DHX9Q08211 1270 aaKnown RBP10.68□□□□□ -0.7
SMC4-223ENST00000493695 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.68□□□□□ -0.7
SMC4-223ENST00000493695 CDV3Q9UKY7 258 aaKnown RBP10.68□□□□□ -0.7
SMC4-223ENST00000493695 FBXO31Q5XUX0 539 aaPredicted RBP10.67□□□□□ -0.7
SMC4-223ENST00000493695 BCANQ96GW7 911 aa10.67□□□□□ -0.7
SMC4-223ENST00000493695 RELBQ01201 579 aa10.66□□□□□ -0.7
SMC4-223ENST00000493695 ZC3H4Q9UPT8 1303 aaKnown RBP10.65□□□□□ -0.7
SMC4-223ENST00000493695 ADAM32Q8TC27 787 aa10.65□□□□□ -0.7
SMC4-223ENST00000493695 AGBL1Q96MI9 1066 aa10.65□□□□□ -0.7
SMC4-223ENST00000493695 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.65□□□□□ -0.7
SMC4-223ENST00000493695 EPS8L1Q8TE68 723 aa10.64□□□□□ -0.71
SMC4-223ENST00000493695 POLMQ9NP87 494 aaPredicted RBP10.64□□□□□ -0.71
SMC4-223ENST00000493695 USP17L8P0C7I0 530 aa10.63□□□□□ -0.71
SMC4-223ENST00000493695 VSIG8P0DPA2 414 aa10.63□□□□□ -0.71
SMC4-223ENST00000493695 PTSQ03393 145 aa10.63□□□□□ -0.71
SMC4-223ENST00000493695 NBPF20Q3BBV1 942 aa10.63□□□□□ -0.71
SMC4-223ENST00000493695 INTS6LQ5JSJ4 861 aaKnown RBP10.63□□□□□ -0.71
SMC4-223ENST00000493695 PPP2R2DQ66LE6 453 aa10.63□□□□□ -0.71
SMC4-223ENST00000493695 DZIP3Q86Y13 1208 aaKnown RBP10.63□□□□□ -0.71
SMC4-223ENST00000493695 LORP23490 312 aaPredicted RBP10.62□□□□□ -0.71
SMC4-223ENST00000493695 ZNF395Q9H8N7 513 aaPredicted RBP10.62□□□□□ -0.71
SMC4-223ENST00000493695 Q6ZVU0 165 aa10.61□□□□□ -0.71
SMC4-223ENST00000493695 INSM2Q96T92 566 aaPredicted RBP10.61□□□□□ -0.71
SMC4-223ENST00000493695 HMX1Q9NP08 348 aaPredicted RBP10.61□□□□□ -0.71
SMC4-223ENST00000493695 SPINT1O43278 529 aa10.6□□□□□ -0.71
SMC4-223ENST00000493695 TMPRSS4Q9NRS4 437 aa10.6□□□□□ -0.71
SMC4-223ENST00000493695 GPSM3Q9Y4H4 160 aa10.6□□□□□ -0.71
SMC4-223ENST00000493695 CDC14CA4D256 554 aa10.59□□□□□ -0.71
SMC4-223ENST00000493695 CNTNAP3BQ96NU0 1288 aa10.59□□□□□ -0.71
SMC4-223ENST00000493695 CNTNAP3Q9BZ76 1288 aa10.59□□□□□ -0.71
SMC4-223ENST00000493695 RFC5P40937 340 aa10.58□□□□□ -0.72
SMC4-223ENST00000493695 CTSOP43234 321 aaPredicted RBP10.58□□□□□ -0.72
SMC4-223ENST00000493695 CCDC155Q8N6L0 562 aa10.58□□□□□ -0.72
SMC4-223ENST00000493695 PCMTD1Q96MG8 357 aaPredicted RBP10.58□□□□□ -0.72
SMC4-223ENST00000493695 OCSTAMPQ9BR26 566 aa10.58□□□□□ -0.72
SMC4-223ENST00000493695 ZNF784Q8NCA9 323 aaPredicted RBP10.57□□□□□ -0.72
SMC4-223ENST00000493695 GPR161Q8N6U8 529 aaKnown RBP10.55□□□□□ -0.72
SMC4-223ENST00000493695 ERVH48-1M5A8F1 160 aa10.54□□□□□ -0.72
SMC4-223ENST00000493695 NEUROD2Q15784 382 aa10.54□□□□□ -0.72
SMC4-223ENST00000493695 COL25A1Q9BXS0 654 aaPredicted RBP10.54□□□□□ -0.72
SMC4-223ENST00000493695 VWA5B2Q8N398 1253 aa10.53□□□□□ -0.72
SMC4-223ENST00000493695 IL27Q8NEV9 243 aa10.53□□□□□ -0.72
SMC4-223ENST00000493695 CYLDQ9NQC7 956 aa10.52□□□□□ -0.73
SMC4-223ENST00000493695 PCDHB9Q9Y5E1 797 aa10.52□□□□□ -0.73
SMC4-223ENST00000493695 ADH1AP07327 375 aa10.51□□□□□ -0.73
SMC4-223ENST00000493695 SLC35F4A4IF30 521 aa10.5□□□□□ -0.73
SMC4-223ENST00000493695 ITGA6P23229 1130 aa10.5□□□□□ -0.73
SMC4-223ENST00000493695 TMEM259Q4ZIN3 620 aa10.5□□□□□ -0.73
SMC4-223ENST00000493695 SV2AQ7L0J3 742 aa10.5□□□□□ -0.73
SMC4-223ENST00000493695 RNF217Q8TC41 542 aa10.5□□□□□ -0.73
SMC4-223ENST00000493695 KRT76Q01546 638 aa10.49□□□□□ -0.73
SMC4-223ENST00000493695 TRIM52Q96A61 297 aa10.49□□□□□ -0.73
SMC4-223ENST00000493695 ADD1P35611 737 aaKnown RBP10.48□□□□□ -0.73
SMC4-223ENST00000493695 PTGIRP43119 386 aa10.48□□□□□ -0.73
SMC4-223ENST00000493695 SVOPQ8N4V2 548 aa10.48□□□□□ -0.73
SMC4-223ENST00000493695 PRICKLE2Q7Z3G6 844 aa10.47□□□□□ -0.73
SMC4-223ENST00000493695 ZBBXA8MT70 800 aa10.46□□□□□ -0.73
SMC4-223ENST00000493695 MEN1O00255 615 aa10.46□□□□□ -0.73
SMC4-223ENST00000493695 LILRA1O75019 489 aa10.46□□□□□ -0.73
SMC4-223ENST00000493695 RNFT1Q5M7Z0 435 aa10.46□□□□□ -0.73
SMC4-223ENST00000493695 LYSMD3Q7Z3D4 306 aa10.46□□□□□ -0.73
SMC4-223ENST00000493695 NANOS1Q8WY41 292 aaKnown RBP10.46□□□□□ -0.73
SMC4-223ENST00000493695 TRIM34Q9BYJ4 488 aa10.46□□□□□ -0.73
SMC4-223ENST00000493695 GIGYF1O75420 1035 aaPredicted RBP10.45□□□□□ -0.74
SMC4-223ENST00000493695 ESF1Q9H501 851 aaKnown RBP10.45□□□□□ -0.74
SMC4-223ENST00000493695 ATP5J2-PTCD1G3V325 749 aa10.44□□□□□ -0.74
SMC4-223ENST00000493695 RHOQP17081 205 aa10.44□□□□□ -0.74
SMC4-223ENST00000493695 FOXD4L5Q5VV16 416 aaPredicted RBP10.44□□□□□ -0.74
SMC4-223ENST00000493695 SEPT12Q8IYM1 358 aa10.44□□□□□ -0.74
SMC4-223ENST00000493695 ESPNB1AK53 854 aa10.43□□□□□ -0.74
SMC4-223ENST00000493695 GOPCQ9HD26 462 aa10.43□□□□□ -0.74
SMC4-223ENST00000493695 ADAMTS8Q9UP79 889 aa10.43□□□□□ -0.74
SMC4-223ENST00000493695 FBXO45P0C2W1 286 aa10.42□□□□□ -0.74
SMC4-223ENST00000493695 RIPOR1Q6ZS17 1223 aa10.41□□□□□ -0.74
SMC4-223ENST00000493695 SENP3-EIF4A1A0A087X0R7 540 aa10.4□□□□□ -0.74
SMC4-223ENST00000493695 RNF225M0QZC1 329 aaPredicted RBP10.4□□□□□ -0.74
SMC4-223ENST00000493695 SLC24A1O60721 1099 aa10.4□□□□□ -0.74
SMC4-223ENST00000493695 SLC27A3Q5K4L6 730 aa10.4□□□□□ -0.74
SMC4-223ENST00000493695 RNF20Q5VTR2 975 aa10.39□□□□□ -0.75
SMC4-223ENST00000493695 ZNF385CQ66K41 422 aaPredicted RBP10.39□□□□□ -0.75
SMC4-223ENST00000493695 TMEM151AQ8N4L1 468 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms