RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-215ENST00000492606 C1orf167Q5SNV9 1468 aa6.98□□□□□ -1.29
UBR4-215ENST00000492606 NEXMIFQ5QGS0 1516 aa6.98□□□□□ -1.29
UBR4-215ENST00000492606 LBX1P52954 281 aa6.98□□□□□ -1.29
UBR4-215ENST00000492606 NOS1P29475 1434 aa6.98□□□□□ -1.29
UBR4-215ENST00000492606 TRPM2O94759 1503 aa6.97□□□□□ -1.29
UBR4-215ENST00000492606 FSTL1Q12841 308 aa6.97□□□□□ -1.29
UBR4-215ENST00000492606 MKRN3Q13064 507 aaKnown RBP6.97□□□□□ -1.29
UBR4-215ENST00000492606 NRAPQ86VF7 1730 aa6.97□□□□□ -1.29
UBR4-215ENST00000492606 PDCD7Q8N8D1 485 aaKnown RBP6.97□□□□□ -1.29
UBR4-215ENST00000492606 ZC3H15Q8WU90 426 aaKnown RBP6.97□□□□□ -1.29
UBR4-215ENST00000492606 PTPRUQ92729 1446 aa6.97□□□□□ -1.29
UBR4-215ENST00000492606 DDX27Q96GQ7 796 aaKnown RBP6.97□□□□□ -1.29
UBR4-215ENST00000492606 TRIM35Q9UPQ4 493 aa6.97□□□□□ -1.29
UBR4-215ENST00000492606 TBX22Q9Y458 520 aa6.97□□□□□ -1.29
UBR4-215ENST00000492606 CTCFP49711 727 aaPredicted RBP6.96□□□□□ -1.3
UBR4-215ENST00000492606 HABP4Q5JVS0 413 aaKnown RBP6.96□□□□□ -1.3
UBR4-215ENST00000492606 SLC17A8Q8NDX2 589 aa6.96□□□□□ -1.3
UBR4-215ENST00000492606 PLEKHG1Q9ULL1 1385 aa6.95□□□□□ -1.3
UBR4-215ENST00000492606 PTPN23Q9H3S7 1636 aa6.95□□□□□ -1.3
UBR4-215ENST00000492606 SZT2Q5T011 3432 aa6.95□□□□□ -1.3
UBR4-215ENST00000492606 ATN1P54259 1190 aaPredicted RBP6.95□□□□□ -1.3
UBR4-215ENST00000492606 GOLGA2Q08379 1002 aa6.95□□□□□ -1.3
UBR4-215ENST00000492606 GPHNQ9NQX3 736 aaPredicted RBP6.95□□□□□ -1.3
UBR4-215ENST00000492606 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.95□□□□□ -1.32e-17■■□□□ 13.8
UBR4-215ENST00000492606 AMOTL2Q9Y2J4 779 aa6.95□□□□□ -1.3
UBR4-215ENST00000492606 PXDNQ92626 1479 aa6.95□□□□□ -1.3
UBR4-215ENST00000492606 RGPD3A6NKT7 1758 aaPredicted RBP6.95□□□□□ -1.3
UBR4-215ENST00000492606 RGPD4Q7Z3J3 1758 aa6.95□□□□□ -1.3
UBR4-215ENST00000492606 ADAMTS13Q76LX8 1427 aa6.94□□□□□ -1.3
UBR4-215ENST00000492606 CEP152O94986 1710 aa6.94□□□□□ -1.3
UBR4-215ENST00000492606 RANGAP1P46060 587 aaPredicted RBP6.94□□□□□ -1.3
UBR4-215ENST00000492606 XPCQ01831 940 aaPredicted RBP6.94□□□□□ -1.3
UBR4-215ENST00000492606 IDI1Q13907 227 aa6.94□□□□□ -1.3
UBR4-215ENST00000492606 SLC15A2Q16348 729 aa6.94□□□□□ -1.3
UBR4-215ENST00000492606 EMILIN3Q9NT22 766 aa6.94□□□□□ -1.3
UBR4-215ENST00000492606 TULP4Q9NRJ4 1543 aa6.94□□□□□ -1.3
UBR4-215ENST00000492606 NALCNQ8IZF0 1738 aa6.93□□□□□ -1.3
UBR4-215ENST00000492606 IRX5P78411 483 aaPredicted RBP6.93□□□□□ -1.3
UBR4-215ENST00000492606 TMEM121BQ9BXQ6 578 aaPredicted RBP6.93□□□□□ -1.3
UBR4-215ENST00000492606 KIAA1107Q9UPP5 1409 aa6.93□□□□□ -1.3
UBR4-215ENST00000492606 RPRD2Q5VT52 1461 aaKnown RBP6.92□□□□□ -1.3
UBR4-215ENST00000492606 ATMINO43313 823 aaPredicted RBP6.92□□□□□ -1.3
UBR4-215ENST00000492606 FXR1P51114 621 aaKnown RBP eCLIP6.92□□□□□ -1.34e-7■■■■□ 22.1
UBR4-215ENST00000492606 ASTLQ6HA08 431 aaPredicted RBP6.92□□□□□ -1.3
UBR4-215ENST00000492606 MICALL2Q8IY33 904 aa6.92□□□□□ -1.3
UBR4-215ENST00000492606 STK32BQ9NY57 414 aa6.92□□□□□ -1.3
UBR4-215ENST00000492606 CDK11AQ9UQ88 783 aaPredicted RBP6.92□□□□□ -1.3
UBR4-215ENST00000492606 SPATA31A5Q5VU36 1347 aa6.92□□□□□ -1.3
UBR4-215ENST00000492606 SPATA31A7Q8IWB4 1347 aa6.92□□□□□ -1.3
UBR4-215ENST00000492606 CLIP1P30622 1438 aa6.92□□□□□ -1.3
UBR4-215ENST00000492606 PRAG1Q86YV5 1406 aa6.92□□□□□ -1.3
UBR4-215ENST00000492606 COL24A1Q17RW2 1714 aa6.91□□□□□ -1.3
UBR4-215ENST00000492606 PLSCR1O15162 318 aa6.91□□□□□ -1.3
UBR4-215ENST00000492606 HSPA8P11142 646 aaKnown RBP6.91□□□□□ -1.3
UBR4-215ENST00000492606 MLLT3P42568 568 aaPredicted RBP6.91□□□□□ -1.3
UBR4-215ENST00000492606 DSG2Q14126 1118 aa6.91□□□□□ -1.3
UBR4-215ENST00000492606 PPP1R15BQ5SWA1 713 aa6.91□□□□□ -1.3
UBR4-215ENST00000492606 PTF1AQ7RTS3 328 aa6.91□□□□□ -1.3
UBR4-215ENST00000492606 CABLES1Q8TDN4 633 aa6.91□□□□□ -1.3
UBR4-215ENST00000492606 ZFYVE9O95405 1425 aa6.91□□□□□ -1.3
UBR4-215ENST00000492606 ADGRL2O95490 1459 aa6.91□□□□□ -1.3
UBR4-215ENST00000492606 ZMYND10O75800 440 aa6.9□□□□□ -1.3
UBR4-215ENST00000492606 BRPF1P55201 1214 aaPredicted RBP6.9□□□□□ -1.3
UBR4-215ENST00000492606 ATP1B4Q9UN42 357 aaPredicted RBP6.9□□□□□ -1.3
UBR4-215ENST00000492606 PIK3R4Q99570 1358 aa6.9□□□□□ -1.31
UBR4-215ENST00000492606 PRXQ9BXM0 1461 aa6.9□□□□□ -1.31
UBR4-215ENST00000492606 EHBP1L1Q8N3D4 1523 aa6.9□□□□□ -1.31
UBR4-215ENST00000492606 ABCA3Q99758 1704 aa6.9□□□□□ -1.31
UBR4-215ENST00000492606 COL6A3P12111 3177 aa6.9□□□□□ -1.31
UBR4-215ENST00000492606 XRN1Q8IZH2 1706 aaKnown RBP6.89□□□□□ -1.31
UBR4-215ENST00000492606 MYO5BQ9ULV0 1848 aa6.88□□□□□ -1.31
UBR4-215ENST00000492606 LRRIQ1Q96JM4 1722 aa6.88□□□□□ -1.31
UBR4-215ENST00000492606 MEGF6O75095 1541 aa6.88□□□□□ -1.31
UBR4-215ENST00000492606 HAX1O00165 279 aa6.88□□□□□ -1.31
UBR4-215ENST00000492606 FOXK1P85037 733 aa6.88□□□□□ -1.31
UBR4-215ENST00000492606 C16orf71Q8IYS4 520 aaPredicted RBP6.88□□□□□ -1.31
UBR4-215ENST00000492606 SLC24A3Q9HC58 644 aa6.88□□□□□ -1.31
UBR4-215ENST00000492606 MKRN1Q9UHC7 482 aaKnown RBP6.88□□□□□ -1.31
UBR4-215ENST00000492606 CICQ96RK0 1608 aaPredicted RBP6.87□□□□□ -1.31
UBR4-215ENST00000492606 CLCN6P51797 869 aa6.87□□□□□ -1.31
UBR4-215ENST00000492606 TMEM132AQ24JP5 1023 aa6.87□□□□□ -1.31
UBR4-215ENST00000492606 TMEM92Q6UXU6 159 aa6.87□□□□□ -1.31
UBR4-215ENST00000492606 AIDAQ96BJ3 306 aa6.87□□□□□ -1.31
UBR4-215ENST00000492606 GCC1Q96CN9 775 aa6.87□□□□□ -1.31
UBR4-215ENST00000492606 BTG4Q9NY30 223 aa6.87□□□□□ -1.31
UBR4-215ENST00000492606 ADAMTS7Q9UKP4 1686 aa6.87□□□□□ -1.31
UBR4-215ENST00000492606 NPHP3Q7Z494 1330 aa6.86□□□□□ -1.31
UBR4-215ENST00000492606 SBF2Q86WG5 1849 aa6.86□□□□□ -1.31
UBR4-215ENST00000492606 DPYSL4O14531 572 aa6.86□□□□□ -1.31
UBR4-215ENST00000492606 RBM26Q5T8P6 1007 aaKnown RBP6.86□□□□□ -1.31
UBR4-215ENST00000492606 WBP1LQ9NX94 342 aa6.86□□□□□ -1.31
UBR4-215ENST00000492606 LMTK2Q8IWU2 1503 aa6.86□□□□□ -1.31
UBR4-215ENST00000492606 SPATA31A3Q5VYP0 1347 aa6.85□□□□□ -1.31
UBR4-215ENST00000492606 POTEFA5A3E0 1075 aa6.85□□□□□ -1.31
UBR4-215ENST00000492606 FOXO3O43524 673 aa6.85□□□□□ -1.31
UBR4-215ENST00000492606 PDIA6Q15084 440 aa6.85□□□□□ -1.31
UBR4-215ENST00000492606 IER5LQ5T953 404 aa6.85□□□□□ -1.31
UBR4-215ENST00000492606 BARGINQ6ZT62 677 aa6.85□□□□□ -1.31
UBR4-215ENST00000492606 SMC1BQ8NDV3 1235 aa6.85□□□□□ -1.31
UBR4-215ENST00000492606 OCEL1Q9H607 264 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms