RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 PRDM11Q9NQV5 511 aa18.69■□□□□ 0.58
C9orf3-221ENST00000489562 LMO7Q8WWI1 1683 aa18.69■□□□□ 0.58
C9orf3-221ENST00000489562 NWD2Q9ULI1 1742 aa18.68■□□□□ 0.58
C9orf3-221ENST00000489562 PLCH1Q4KWH8 1693 aa18.67■□□□□ 0.58
C9orf3-221ENST00000489562 FAM208AQ9UK61 1670 aaKnown RBP18.67■□□□□ 0.58
C9orf3-221ENST00000489562 PPM1GO15355 546 aaPredicted RBP18.67■□□□□ 0.58
C9orf3-221ENST00000489562 IP6K1Q92551 441 aa18.67■□□□□ 0.58
C9orf3-221ENST00000489562 NUTM2BA6NNL0 878 aaPredicted RBP18.66■□□□□ 0.58
C9orf3-221ENST00000489562 NUTM2EB1AL46 878 aaPredicted RBP18.66■□□□□ 0.58
C9orf3-221ENST00000489562 HOXC9P31274 260 aa18.66■□□□□ 0.58
C9orf3-221ENST00000489562 NUTM2AQ8IVF1 878 aaPredicted RBP18.66■□□□□ 0.58
C9orf3-221ENST00000489562 COL3A1P02461 1466 aaPredicted RBP18.65■□□□□ 0.58
C9orf3-221ENST00000489562 ZBTB7CA1YPR0 619 aa18.65■□□□□ 0.58
C9orf3-221ENST00000489562 LRP6O75581 1613 aa18.64■□□□□ 0.57
C9orf3-221ENST00000489562 MRS2Q9HD23 443 aa18.63■□□□□ 0.57
C9orf3-221ENST00000489562 ADAMTS2O95450 1211 aa18.62■□□□□ 0.57
C9orf3-221ENST00000489562 CHRNA2Q15822 529 aa18.62■□□□□ 0.57
C9orf3-221ENST00000489562 CAMTA1Q9Y6Y1 1673 aa18.62■□□□□ 0.57
C9orf3-221ENST00000489562 NRAPQ86VF7 1730 aa18.61■□□□□ 0.57
C9orf3-221ENST00000489562 FAM83GA6ND36 823 aa18.61■□□□□ 0.57
C9orf3-221ENST00000489562 DIAPH1O60610 1272 aaKnown RBP18.61■□□□□ 0.57
C9orf3-221ENST00000489562 HSP90AB2PQ58FF8 381 aa18.61■□□□□ 0.57
C9orf3-221ENST00000489562 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.6■□□□□ 0.57
C9orf3-221ENST00000489562 NUDCQ9Y266 331 aa18.6■□□□□ 0.57
C9orf3-221ENST00000489562 RGPD1P0DJD0 1748 aa18.6■□□□□ 0.57
C9orf3-221ENST00000489562 SLIT2O94813 1529 aa18.59■□□□□ 0.57
C9orf3-221ENST00000489562 COL5A2P05997 1499 aaPredicted RBP18.59■□□□□ 0.57
C9orf3-221ENST00000489562 MEX3CQ5U5Q3 659 aaKnown RBP18.59■□□□□ 0.57
C9orf3-221ENST00000489562 AXIN2Q9Y2T1 843 aa18.59■□□□□ 0.57
C9orf3-221ENST00000489562 RGPD2P0DJD1 1756 aa18.58■□□□□ 0.57
C9orf3-221ENST00000489562 ERBB3P21860 1342 aa18.58■□□□□ 0.57
C9orf3-221ENST00000489562 EIF4A2Q14240 407 aaKnown RBP18.58■□□□□ 0.56
C9orf3-221ENST00000489562 IL13P35225 146 aa18.57■□□□□ 0.56
C9orf3-221ENST00000489562 CCDC184Q52MB2 194 aa18.57■□□□□ 0.56
C9orf3-221ENST00000489562 ANKRD24Q8TF21 1146 aa18.57■□□□□ 0.56
C9orf3-221ENST00000489562 BTG4Q9NY30 223 aa18.56■□□□□ 0.56
C9orf3-221ENST00000489562 WDR17Q8IZU2 1322 aa18.55■□□□□ 0.56
C9orf3-221ENST00000489562 WDR43Q15061 677 aaKnown RBP eCLIP18.55■□□□□ 0.56
C9orf3-221ENST00000489562 NGLY1Q96IV0 654 aa18.55■□□□□ 0.56
C9orf3-221ENST00000489562 C8orf37Q96NL8 207 aa18.55■□□□□ 0.56
C9orf3-221ENST00000489562 CSB-PGBD3P0DP91 1061 aa18.54■□□□□ 0.56
C9orf3-221ENST00000489562 EVA1CP58658 441 aa18.54■□□□□ 0.56
C9orf3-221ENST00000489562 FNBP4Q8N3X1 1017 aaPredicted RBP18.54■□□□□ 0.56
C9orf3-221ENST00000489562 LTV1Q96GA3 475 aaPredicted RBP18.54■□□□□ 0.56
C9orf3-221ENST00000489562 NCAPD2Q15021 1401 aa18.53■□□□□ 0.56
C9orf3-221ENST00000489562 PNISRQ8TF01 805 aaKnown RBP18.53■□□□□ 0.56
C9orf3-221ENST00000489562 IGSF1Q8N6C5 1336 aa18.52■□□□□ 0.56
C9orf3-221ENST00000489562 U2SURPO15042 1029 aaKnown RBP18.52■□□□□ 0.56
C9orf3-221ENST00000489562 CRB1P82279 1406 aa18.51■□□□□ 0.55
C9orf3-221ENST00000489562 U2AF1L5P0DN76 240 aaPredicted RBP18.51■□□□□ 0.55
C9orf3-221ENST00000489562 U2AF1Q01081 240 aaKnown RBP eCLIP18.51■□□□□ 0.55
C9orf3-221ENST00000489562 UNC5CLQ8IV45 518 aa18.51■□□□□ 0.55
C9orf3-221ENST00000489562 EYA1Q99502 592 aa18.51■□□□□ 0.55
C9orf3-221ENST00000489562 STRN4Q9NRL3 753 aa18.51■□□□□ 0.55
C9orf3-221ENST00000489562 BCL9LQ86UU0 1499 aa18.51■□□□□ 0.55
C9orf3-221ENST00000489562 PNNQ9H307 717 aaKnown RBP18.5■□□□□ 0.55
C9orf3-221ENST00000489562 AFF2P51816 1311 aa18.49■□□□□ 0.55
C9orf3-221ENST00000489562 WNK3Q9BYP7 1800 aa18.49■□□□□ 0.55
C9orf3-221ENST00000489562 TOM1L2Q6ZVM7 507 aa18.49■□□□□ 0.55
C9orf3-221ENST00000489562 CARD10Q9BWT7 1032 aa18.49■□□□□ 0.55
C9orf3-221ENST00000489562 NLRP2Q9NX02 1062 aa18.49■□□□□ 0.55
C9orf3-221ENST00000489562 KDRP35968 1356 aa18.49■□□□□ 0.55
C9orf3-221ENST00000489562 NBPF6Q5VWK0 638 aa18.48■□□□□ 0.55
C9orf3-221ENST00000489562 NBPF4Q96M43 638 aa18.48■□□□□ 0.55
C9orf3-221ENST00000489562 USP21Q9UK80 565 aa18.48■□□□□ 0.55
C9orf3-221ENST00000489562 PARP4Q9UKK3 1724 aaKnown RBP18.48■□□□□ 0.55
C9orf3-221ENST00000489562 PLEKHG2Q9H7P9 1386 aa18.47■□□□□ 0.55
C9orf3-221ENST00000489562 FCHSD2O94868 740 aa18.47■□□□□ 0.55
C9orf3-221ENST00000489562 LARP1Q6PKG0 1096 aaKnown RBP18.47■□□□□ 0.55
C9orf3-221ENST00000489562 VPS72Q15906 364 aa18.46■□□□□ 0.55
C9orf3-221ENST00000489562 SULT6B1Q6IMI4 303 aa18.46■□□□□ 0.55
C9orf3-221ENST00000489562 FAM9BQ8IZU0 186 aa18.46■□□□□ 0.55
C9orf3-221ENST00000489562 ADAMTS8Q9UP79 889 aa18.46■□□□□ 0.55
C9orf3-221ENST00000489562 ATRNO75882 1429 aa18.44■□□□□ 0.54
C9orf3-221ENST00000489562 NEFMP07197 916 aa18.44■□□□□ 0.54
C9orf3-221ENST00000489562 ZNF772Q68DY9 489 aaPredicted RBP18.44■□□□□ 0.54
C9orf3-221ENST00000489562 THRAP3Q9Y2W1 955 aaKnown RBP18.44■□□□□ 0.54
C9orf3-221ENST00000489562 SPATA31A5Q5VU36 1347 aa18.44■□□□□ 0.54
C9orf3-221ENST00000489562 SPATA31A7Q8IWB4 1347 aa18.44■□□□□ 0.54
C9orf3-221ENST00000489562 HMOX1P09601 288 aa18.43■□□□□ 0.54
C9orf3-221ENST00000489562 RSPH6AQ9H0K4 717 aa18.43■□□□□ 0.54
C9orf3-221ENST00000489562 TRPC5Q9UL62 973 aaPredicted RBP18.43■□□□□ 0.54
C9orf3-221ENST00000489562 SPATA31A1Q5TZJ5 1347 aa18.43■□□□□ 0.54
C9orf3-221ENST00000489562 AEBP1Q8IUX7 1158 aa18.42■□□□□ 0.54
C9orf3-221ENST00000489562 TCP11L2Q8N4U5 519 aa18.42■□□□□ 0.54
C9orf3-221ENST00000489562 USHBP1Q8N6Y0 703 aa18.42■□□□□ 0.54
C9orf3-221ENST00000489562 RAPGEF4Q8WZA2 1011 aa18.42■□□□□ 0.54
C9orf3-221ENST00000489562 PKD1L3Q7Z443 1732 aa18.42■□□□□ 0.54
C9orf3-221ENST00000489562 PRKAR2BP31323 418 aa18.41■□□□□ 0.54
C9orf3-221ENST00000489562 CDCA7Q9BWT1 371 aaPredicted RBP18.41■□□□□ 0.54
C9orf3-221ENST00000489562 CCDC9Q9Y3X0 531 aaKnown RBP18.41■□□□□ 0.54
C9orf3-221ENST00000489562 MAPK8IP3Q9UPT6 1336 aa18.41■□□□□ 0.54
C9orf3-221ENST00000489562 RUNDC1Q96C34 613 aa18.4■□□□□ 0.54
C9orf3-221ENST00000489562 IL2RBP14784 551 aa18.39■□□□□ 0.53
C9orf3-221ENST00000489562 TATP17735 454 aaPredicted RBP18.39■□□□□ 0.53
C9orf3-221ENST00000489562 BARGINQ6ZT62 677 aa18.39■□□□□ 0.53
C9orf3-221ENST00000489562 PLEKHF1Q96S99 279 aa18.39■□□□□ 0.53
C9orf3-221ENST00000489562 USP35Q9P2H5 1018 aa18.39■□□□□ 0.53
C9orf3-221ENST00000489562 OVOS2A0A0G2JMS6 1433 aa18.39■□□□□ 0.53
C9orf3-221ENST00000489562 DISP2A7MBM2 1401 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 158.3 ms