RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 U2AF2P26368 475 aaKnown RBP eCLIP7.58□□□□□ -1.26e-7■■■■□ 26.4
VPS13D-209ENST00000487188 PKP1Q13835 747 aa7.58□□□□□ -1.2
VPS13D-209ENST00000487188 ATP2B3Q16720 1220 aa7.58□□□□□ -1.2
VPS13D-209ENST00000487188 FAM184AQ8NB25 1140 aa7.58□□□□□ -1.2
VPS13D-209ENST00000487188 STAC3Q96MF2 364 aa7.58□□□□□ -1.2
VPS13D-209ENST00000487188 PDIA4P13667 645 aaKnown RBP7.58□□□□□ -1.2
VPS13D-209ENST00000487188 GTF2E1P29083 439 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-209ENST00000487188 ZGPATQ8N5A5 531 aaKnown RBP7.58□□□□□ -1.2
VPS13D-209ENST00000487188 AK9Q5TCS8 1911 aa7.57□□□□□ -1.2
VPS13D-209ENST00000487188 REC8O95072 547 aa7.57□□□□□ -1.2
VPS13D-209ENST00000487188 MCCP23508 829 aa7.57□□□□□ -1.2
VPS13D-209ENST00000487188 RSPH4AQ5TD94 716 aa7.57□□□□□ -1.2
VPS13D-209ENST00000487188 DRC7Q8IY82 874 aa7.57□□□□□ -1.2
VPS13D-209ENST00000487188 NSD3Q9BZ95 1437 aa7.57□□□□□ -1.2
VPS13D-209ENST00000487188 RICTORQ6R327 1708 aa7.57□□□□□ -1.2
VPS13D-209ENST00000487188 ADCY5O95622 1261 aa7.57□□□□□ -1.2
VPS13D-209ENST00000487188 CHGAP10645 457 aaKnown RBP7.57□□□□□ -1.2
VPS13D-209ENST00000487188 KIF2CQ99661 725 aa7.57□□□□□ -1.2
VPS13D-209ENST00000487188 ZBTB40Q9NUA8 1239 aa7.57□□□□□ -1.2
VPS13D-209ENST00000487188 CCDC27Q2M243 656 aa7.56□□□□□ -1.2
VPS13D-209ENST00000487188 NEO1Q92859 1461 aa7.56□□□□□ -1.2
VPS13D-209ENST00000487188 KCNJ4P48050 445 aa7.56□□□□□ -1.2
VPS13D-209ENST00000487188 SPC24Q8NBT2 197 aa7.56□□□□□ -1.2
VPS13D-209ENST00000487188 CHAMP1Q96JM3 812 aa7.56□□□□□ -1.2
VPS13D-209ENST00000487188 ZNF710Q8N1W2 664 aa7.56□□□□□ -1.2
VPS13D-209ENST00000487188 TPM3P06753 285 aa7.55□□□□□ -1.2
VPS13D-209ENST00000487188 NEK4P51957 841 aa7.55□□□□□ -1.2
VPS13D-209ENST00000487188 CARD14Q9BXL6 1004 aa7.55□□□□□ -1.2
VPS13D-209ENST00000487188 CDC42BPBQ9Y5S2 1711 aa7.55□□□□□ -1.2
VPS13D-209ENST00000487188 RIOK3O14730 519 aaKnown RBP7.55□□□□□ -1.2
VPS13D-209ENST00000487188 UVSSAQ2YD98 709 aa7.55□□□□□ -1.2
VPS13D-209ENST00000487188 PLCD3Q8N3E9 789 aa7.55□□□□□ -1.2
VPS13D-209ENST00000487188 MYO5CQ9NQX4 1742 aa7.55□□□□□ -1.2
VPS13D-209ENST00000487188 ABCC11Q96J66 1382 aa7.55□□□□□ -1.2
VPS13D-209ENST00000487188 CFAP74Q9C0B2 1584 aa7.55□□□□□ -1.2
VPS13D-209ENST00000487188 KDM5AP29375 1690 aaKnown RBP7.54□□□□□ -1.2
VPS13D-209ENST00000487188 FEZ1Q99689 392 aa7.54□□□□□ -1.2
VPS13D-209ENST00000487188 GDPD2Q9HCC8 539 aa7.54□□□□□ -1.2
VPS13D-209ENST00000487188 IFT57Q9NWB7 429 aa7.54□□□□□ -1.2
VPS13D-209ENST00000487188 ERICH4A6NGS2 130 aa7.54□□□□□ -1.2
VPS13D-209ENST00000487188 CFAP70Q5T0N1 1121 aa7.54□□□□□ -1.2
VPS13D-209ENST00000487188 IPO4Q8TEX9 1081 aaKnown RBP7.54□□□□□ -1.2
VPS13D-209ENST00000487188 OGFRQ9NZT2 677 aa7.54□□□□□ -1.2
VPS13D-209ENST00000487188 NSFL1CQ9UNZ2 370 aaKnown RBP7.54□□□□□ -1.2
VPS13D-209ENST00000487188 HCLS1P14317 486 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-209ENST00000487188 ZNF592Q92610 1267 aa7.54□□□□□ -1.2
VPS13D-209ENST00000487188 ELL2O00472 640 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-209ENST00000487188 FKBP5Q13451 457 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-209ENST00000487188 CDC42BPAQ5VT25 1732 aa7.53□□□□□ -1.2
VPS13D-209ENST00000487188 TMPOP42166 694 aaKnown RBP7.53□□□□□ -1.2
VPS13D-209ENST00000487188 TNNT3P45378 269 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-209ENST00000487188 CCDC183Q5T5S1 534 aa7.53□□□□□ -1.2
VPS13D-209ENST00000487188 SLC12A5Q9H2X9 1139 aa7.53□□□□□ -1.2
VPS13D-209ENST00000487188 SIGLEC1Q9BZZ2 1709 aa7.53□□□□□ -1.2
VPS13D-209ENST00000487188 GTF2F1P35269 517 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS13D-209ENST00000487188 GABPB1Q06547 395 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-209ENST00000487188 PLA2R1Q13018 1463 aa7.53□□□□□ -1.2
VPS13D-209ENST00000487188 PREX2Q70Z35 1606 aa7.53□□□□□ -1.2
VPS13D-209ENST00000487188 PLCH2O75038 1416 aa7.52□□□□□ -1.2
VPS13D-209ENST00000487188 CYP2E1P05181 493 aaPredicted RBP7.52□□□□□ -1.2
VPS13D-209ENST00000487188 MCM2P49736 904 aa7.52□□□□□ -1.2
VPS13D-209ENST00000487188 CCDC112Q8NEF3 446 aa7.52□□□□□ -1.2
VPS13D-209ENST00000487188 TIGD1Q96MW7 591 aa7.52□□□□□ -1.2
VPS13D-209ENST00000487188 TTC22Q5TAA0 569 aa7.52□□□□□ -1.21
VPS13D-209ENST00000487188 TRAK1Q9UPV9 953 aa7.52□□□□□ -1.21
VPS13D-209ENST00000487188 ERC2O15083 957 aa7.52□□□□□ -1.21
VPS13D-209ENST00000487188 USP26Q9BXU7 913 aa7.52□□□□□ -1.21
VPS13D-209ENST00000487188 WDR33Q9C0J8 1336 aaKnown RBP7.52□□□□□ -1.21
VPS13D-209ENST00000487188 ALDH1L2Q3SY69 923 aa7.52□□□□□ -1.21
VPS13D-209ENST00000487188 KANK1Q14678 1352 aa7.51□□□□□ -1.21
VPS13D-209ENST00000487188 TMX3Q96JJ7 454 aa7.51□□□□□ -1.21
VPS13D-209ENST00000487188 C16orf45Q96MC5 204 aaPredicted RBP7.51□□□□□ -1.21
VPS13D-209ENST00000487188 CALCOCO1Q9P1Z2 691 aa7.51□□□□□ -1.21
VPS13D-209ENST00000487188 FANCAO15360 1455 aa7.51□□□□□ -1.21
VPS13D-209ENST00000487188 ZBTB22O15209 634 aa7.51□□□□□ -1.21
VPS13D-209ENST00000487188 FIBPO43427 364 aa7.51□□□□□ -1.21
VPS13D-209ENST00000487188 PHF23Q9BUL5 403 aaPredicted RBP7.51□□□□□ -1.21
VPS13D-209ENST00000487188 TPD52L1Q16890 204 aaPredicted RBP7.51□□□□□ -1.21
VPS13D-209ENST00000487188 API5Q9BZZ5 524 aaKnown RBP7.51□□□□□ -1.21
VPS13D-209ENST00000487188 TMEM51Q9NW97 253 aa7.51□□□□□ -1.21
VPS13D-209ENST00000487188 GSPT1P15170 499 aaKnown RBP7.5□□□□□ -1.21
VPS13D-209ENST00000487188 KRT222Q8N1A0 295 aa7.5□□□□□ -1.21
VPS13D-209ENST00000487188 TRERF1Q96PN7 1200 aa7.5□□□□□ -1.21
VPS13D-209ENST00000487188 DNAJC2Q99543 621 aaKnown RBP7.5□□□□□ -1.21
VPS13D-209ENST00000487188 KDM4FA0A1W2PPD8 638 aa7.5□□□□□ -1.21
VPS13D-209ENST00000487188 USP48Q86UV5 1035 aa7.5□□□□□ -1.21
VPS13D-209ENST00000487188 PLEKHM2Q8IWE5 1019 aa7.5□□□□□ -1.21
VPS13D-209ENST00000487188 ANO2Q9NQ90 1003 aa7.5□□□□□ -1.21
VPS13D-209ENST00000487188 ZDHHC9Q9Y397 364 aa7.5□□□□□ -1.21
VPS13D-209ENST00000487188 KDM4AO75164 1064 aa7.5□□□□□ -1.21
VPS13D-209ENST00000487188 GADD45BO75293 160 aaPredicted RBP7.5□□□□□ -1.21
VPS13D-209ENST00000487188 ATP6V1DQ9Y5K8 247 aa7.5□□□□□ -1.21
VPS13D-209ENST00000487188 ARHGEF40Q8TER5 1519 aa7.5□□□□□ -1.21
VPS13D-209ENST00000487188 PPIP5K1Q6PFW1 1433 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 TRIM6-TRIM34B2RNG4 842 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 TNNT1P13805 278 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 CHMP4AQ9BY43 222 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 IQSEC2Q5JU85 1478 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 ARHGAP5Q13017 1502 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 RNF17Q9BXT8 1623 aaKnown RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms