RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 DRC7Q8IY82 874 aa13.39□□□□□ -0.27
HDAC6-228ENST00000486227 NEUROD6Q96NK8 337 aa13.39□□□□□ -0.27
HDAC6-228ENST00000486227 USHBP1Q8N6Y0 703 aa13.38□□□□□ -0.27
HDAC6-228ENST00000486227 SPG7Q9UQ90 795 aa13.38□□□□□ -0.27
HDAC6-228ENST00000486227 ACEP12821 1306 aa13.38□□□□□ -0.27
HDAC6-228ENST00000486227 PER1O15534 1290 aaPredicted RBP13.38□□□□□ -0.27
HDAC6-228ENST00000486227 ABCC11Q96J66 1382 aa13.38□□□□□ -0.27
HDAC6-228ENST00000486227 GNAT3A8MTJ3 354 aa13.38□□□□□ -0.27
HDAC6-228ENST00000486227 KCNH5Q8NCM2 988 aa13.38□□□□□ -0.27
HDAC6-228ENST00000486227 ARHGEF12Q9NZN5 1544 aa13.38□□□□□ -0.27
HDAC6-228ENST00000486227 RRP9O43818 475 aaKnown RBP13.38□□□□□ -0.27
HDAC6-228ENST00000486227 MAP7D2Q96T17 732 aa13.38□□□□□ -0.27
HDAC6-228ENST00000486227 CARD14Q9BXL6 1004 aa13.38□□□□□ -0.27
HDAC6-228ENST00000486227 SRCIN1Q9C0H9 1055 aa13.38□□□□□ -0.27
HDAC6-228ENST00000486227 GOLGA6L6A8MZA4 724 aa13.37□□□□□ -0.27
HDAC6-228ENST00000486227 IFT57Q9NWB7 429 aa13.37□□□□□ -0.27
HDAC6-228ENST00000486227 UHRF1BP1LA0JNW5 1464 aa13.37□□□□□ -0.27
HDAC6-228ENST00000486227 CSPP1Q1MSJ5 1256 aa13.36□□□□□ -0.27
HDAC6-228ENST00000486227 ANKRD36BQ8N2N9 1353 aa13.36□□□□□ -0.27
HDAC6-228ENST00000486227 BTBD11A6QL63 1104 aa13.36□□□□□ -0.27
HDAC6-228ENST00000486227 CABP4P57796 275 aa13.36□□□□□ -0.27
HDAC6-228ENST00000486227 CHD1LQ86WJ1 897 aa13.36□□□□□ -0.27
HDAC6-228ENST00000486227 FAM13BQ9NYF5 915 aa13.36□□□□□ -0.27
HDAC6-228ENST00000486227 NRDCO43847 1150 aa13.35□□□□□ -0.27
HDAC6-228ENST00000486227 KIF3AQ9Y496 699 aa13.35□□□□□ -0.27
HDAC6-228ENST00000486227 ASXL1Q8IXJ9 1541 aa13.35□□□□□ -0.27
HDAC6-228ENST00000486227 CLSTN1O94985 981 aa13.35□□□□□ -0.27
HDAC6-228ENST00000486227 AMOTL1Q8IY63 956 aa13.35□□□□□ -0.27
HDAC6-228ENST00000486227 PHF14O94880 888 aa13.35□□□□□ -0.27
HDAC6-228ENST00000486227 RIMS2Q9UQ26 1411 aa13.35□□□□□ -0.27
HDAC6-228ENST00000486227 MYL6BP14649 208 aa13.35□□□□□ -0.27
HDAC6-228ENST00000486227 FAM184AQ8NB25 1140 aa13.34□□□□□ -0.27
HDAC6-228ENST00000486227 FBXW7Q969H0 707 aa13.34□□□□□ -0.27
HDAC6-228ENST00000486227 UHRF1BP1Q6BDS2 1440 aa13.34□□□□□ -0.27
HDAC6-228ENST00000486227 H3BQV1 296 aa13.34□□□□□ -0.27
HDAC6-228ENST00000486227 IFFO2Q5TF58 517 aa13.34□□□□□ -0.27
HDAC6-228ENST00000486227 TRIM34Q9BYJ4 488 aa13.34□□□□□ -0.27
HDAC6-228ENST00000486227 LRPPRCP42704 1394 aaKnown RBP13.34□□□□□ -0.27
HDAC6-228ENST00000486227 FAM83GA6ND36 823 aa13.34□□□□□ -0.27
HDAC6-228ENST00000486227 APPP05067 770 aa13.34□□□□□ -0.27
HDAC6-228ENST00000486227 ALDH1L2Q3SY69 923 aa13.34□□□□□ -0.27
HDAC6-228ENST00000486227 RNF20Q5VTR2 975 aa13.34□□□□□ -0.27
HDAC6-228ENST00000486227 MTERF4Q7Z6M4 381 aaKnown RBP13.33□□□□□ -0.28
HDAC6-228ENST00000486227 ZRANB1Q9UGI0 708 aa13.33□□□□□ -0.28
HDAC6-228ENST00000486227 TRIM27P14373 513 aa13.33□□□□□ -0.28
HDAC6-228ENST00000486227 KIF6Q6ZMV9 814 aa13.33□□□□□ -0.28
HDAC6-228ENST00000486227 CADPS2Q86UW7 1296 aa13.33□□□□□ -0.28
HDAC6-228ENST00000486227 HMGB2P26583 209 aaKnown RBP13.33□□□□□ -0.28
HDAC6-228ENST00000486227 HSP90AB2PQ58FF8 381 aa13.32□□□□□ -0.28
HDAC6-228ENST00000486227 CNTROBQ8N137 903 aa13.32□□□□□ -0.28
HDAC6-228ENST00000486227 LRRCC1Q9C099 1032 aa13.32□□□□□ -0.28
HDAC6-228ENST00000486227 FAM177BA6PVY3 158 aa13.32□□□□□ -0.28
HDAC6-228ENST00000486227 ATP6V1DQ9Y5K8 247 aa13.32□□□□□ -0.28
HDAC6-228ENST00000486227 SF3A1Q15459 793 aaKnown RBP13.32□□□□□ -0.28
HDAC6-228ENST00000486227 RPAP2Q8IXW5 612 aaPredicted RBP13.32□□□□□ -0.28
HDAC6-228ENST00000486227 TAF7Q15545 349 aaPredicted RBP13.31□□□□□ -0.28
HDAC6-228ENST00000486227 FSD1Q9BTV5 496 aa13.31□□□□□ -0.28
HDAC6-228ENST00000486227 ATP7AQ04656 1500 aa13.31□□□□□ -0.28
HDAC6-228ENST00000486227 MBD5Q9P267 1494 aa13.31□□□□□ -0.28
HDAC6-228ENST00000486227 SRGAP3O43295 1099 aa13.31□□□□□ -0.28
HDAC6-228ENST00000486227 NASPP49321 788 aaPredicted RBP13.31□□□□□ -0.28
HDAC6-228ENST00000486227 TTC21BQ7Z4L5 1316 aa13.31□□□□□ -0.28
HDAC6-228ENST00000486227 ADAMTS2O95450 1211 aa13.31□□□□□ -0.28
HDAC6-228ENST00000486227 SIL1Q9H173 461 aa13.31□□□□□ -0.28
HDAC6-228ENST00000486227 NGLY1Q96IV0 654 aa13.3□□□□□ -0.28
HDAC6-228ENST00000486227 ESPNB1AK53 854 aa13.3□□□□□ -0.28
HDAC6-228ENST00000486227 F6X3S4 739 aa13.3□□□□□ -0.28
HDAC6-228ENST00000486227 NEK4P51957 841 aa13.3□□□□□ -0.28
HDAC6-228ENST00000486227 MCTP1Q6DN14 999 aa13.3□□□□□ -0.28
HDAC6-228ENST00000486227 IL1RAPL2Q9NP60 686 aa13.3□□□□□ -0.28
HDAC6-228ENST00000486227 EXOC6BQ9Y2D4 811 aa13.3□□□□□ -0.28
HDAC6-228ENST00000486227 MCM4P33991 863 aa13.3□□□□□ -0.28
HDAC6-228ENST00000486227 MPRIPQ6WCQ1 1025 aa13.3□□□□□ -0.28
HDAC6-228ENST00000486227 EIF2AK4Q9P2K8 1649 aaKnown RBP13.3□□□□□ -0.28
HDAC6-228ENST00000486227 PUS7Q96PZ0 661 aaKnown RBP13.3□□□□□ -0.28
HDAC6-228ENST00000486227 POLKQ9UBT6 870 aa13.3□□□□□ -0.28
HDAC6-228ENST00000486227 CCDC34Q96HJ3 373 aa13.29□□□□□ -0.28
HDAC6-228ENST00000486227 PPP1R1BQ9UD71 204 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-228ENST00000486227 NUCB2P80303 420 aa13.29□□□□□ -0.28
HDAC6-228ENST00000486227 GRPEL1Q9HAV7 217 aa13.29□□□□□ -0.28
HDAC6-228ENST00000486227 MBIPQ9NS73 344 aa13.29□□□□□ -0.28
HDAC6-228ENST00000486227 SMC3Q9UQE7 1217 aa13.29□□□□□ -0.28
HDAC6-228ENST00000486227 NCKAP5LQ9HCH0 1330 aa13.29□□□□□ -0.28
HDAC6-228ENST00000486227 ZMYM3Q14202 1370 aa13.29□□□□□ -0.28
HDAC6-228ENST00000486227 VPS37CA5D8V6 355 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-228ENST00000486227 CCDC173Q0VFZ6 552 aa13.29□□□□□ -0.28
HDAC6-228ENST00000486227 WASHC4Q2M389 1173 aa13.29□□□□□ -0.28
HDAC6-228ENST00000486227 PPIP5K1Q6PFW1 1433 aa13.29□□□□□ -0.28
HDAC6-228ENST00000486227 TOM1O60784 492 aa13.28□□□□□ -0.28
HDAC6-228ENST00000486227 COL17A1Q9UMD9 1497 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-228ENST00000486227 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.28□□□□□ -0.28
HDAC6-228ENST00000486227 DNAJC2Q99543 621 aaKnown RBP13.28□□□□□ -0.28
HDAC6-228ENST00000486227 POLR3AO14802 1390 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-228ENST00000486227 ABCA8O94911 1581 aa13.28□□□□□ -0.28
HDAC6-228ENST00000486227 KRT28Q7Z3Y7 464 aa13.28□□□□□ -0.28
HDAC6-228ENST00000486227 ERC1Q8IUD2 1116 aa13.28□□□□□ -0.28
HDAC6-228ENST00000486227 CHMP4CQ96CF2 233 aa13.28□□□□□ -0.28
HDAC6-228ENST00000486227 MAST1Q9Y2H9 1570 aa13.27□□□□□ -0.28
HDAC6-228ENST00000486227 MAP4K4O95819 1239 aaPredicted RBP13.27□□□□□ -0.29
HDAC6-228ENST00000486227 R3HCC1Q9Y3T6 440 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms