RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-208ENST00000486159 TCP11L2Q8N4U5 519 aa13.34□□□□□ -0.27
TMEM39A-208ENST00000486159 CAMKK2Q96RR4 588 aa13.34□□□□□ -0.27
TMEM39A-208ENST00000486159 COL18A1P39060 1754 aa13.34□□□□□ -0.27
TMEM39A-208ENST00000486159 EVC2Q86UK5 1308 aa13.34□□□□□ -0.27
TMEM39A-208ENST00000486159 RGPD5Q99666 1765 aa13.33□□□□□ -0.28
TMEM39A-208ENST00000486159 APBA3O96018 575 aa13.33□□□□□ -0.28
TMEM39A-208ENST00000486159 FAM196AQ6ZSG2 479 aa13.33□□□□□ -0.28
TMEM39A-208ENST00000486159 PTF1AQ7RTS3 328 aa13.33□□□□□ -0.28
TMEM39A-208ENST00000486159 TTC21BQ7Z4L5 1316 aa13.33□□□□□ -0.28
TMEM39A-208ENST00000486159 SLIT3O75094 1523 aa13.33□□□□□ -0.28
TMEM39A-208ENST00000486159 PDE3BQ13370 1112 aa13.32□□□□□ -0.28
TMEM39A-208ENST00000486159 AKAP12Q02952 1782 aa13.32□□□□□ -0.28
TMEM39A-208ENST00000486159 ATXN8OSP0DMR3 200 aa13.31□□□□□ -0.28
TMEM39A-208ENST00000486159 TIMELESSQ9UNS1 1208 aa13.3□□□□□ -0.28
TMEM39A-208ENST00000486159 LRP5O75197 1615 aa13.3□□□□□ -0.28
TMEM39A-208ENST00000486159 AATKQ6ZMQ8 1374 aa13.3□□□□□ -0.28
TMEM39A-208ENST00000486159 DISP2A7MBM2 1401 aa13.3□□□□□ -0.28
TMEM39A-208ENST00000486159 TOM1L2Q6ZVM7 507 aa13.29□□□□□ -0.28
TMEM39A-208ENST00000486159 ARHGEF25Q86VW2 580 aa13.29□□□□□ -0.28
TMEM39A-208ENST00000486159 CRB1P82279 1406 aa13.29□□□□□ -0.28
TMEM39A-208ENST00000486159 CPSF1Q10570 1443 aaKnown RBP13.29□□□□□ -0.28
TMEM39A-208ENST00000486159 PARP4Q9UKK3 1724 aaKnown RBP13.28□□□□□ -0.28
TMEM39A-208ENST00000486159 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.28□□□□□ -0.28
TMEM39A-208ENST00000486159 NME9Q86XW9 330 aa13.27□□□□□ -0.29
TMEM39A-208ENST00000486159 CARD11Q9BXL7 1154 aa13.27□□□□□ -0.29
TMEM39A-208ENST00000486159 SLC12A5Q9H2X9 1139 aa13.27□□□□□ -0.29
TMEM39A-208ENST00000486159 THRAP3Q9Y2W1 955 aaKnown RBP13.27□□□□□ -0.29
TMEM39A-208ENST00000486159 BRD4O60885 1362 aaPredicted RBP13.27□□□□□ -0.29
TMEM39A-208ENST00000486159 KTN1Q86UP2 1357 aaKnown RBP13.27□□□□□ -0.29
TMEM39A-208ENST00000486159 CD163L1Q9NR16 1453 aa13.27□□□□□ -0.29
TMEM39A-208ENST00000486159 LRRC37A3O60309 1634 aa13.27□□□□□ -0.29
TMEM39A-208ENST00000486159 RREB1Q92766 1687 aa13.27□□□□□ -0.29
TMEM39A-208ENST00000486159 NUP188Q5SRE5 1749 aa13.27□□□□□ -0.29
TMEM39A-208ENST00000486159 PEAK1Q9H792 1746 aa13.27□□□□□ -0.29
TMEM39A-208ENST00000486159 MARCH10Q8NA82 808 aaPredicted RBP13.26□□□□□ -0.29
TMEM39A-208ENST00000486159 ZNF692Q9BU19 519 aaPredicted RBP13.26□□□□□ -0.29
TMEM39A-208ENST00000486159 SBF2Q86WG5 1849 aa13.25□□□□□ -0.29
TMEM39A-208ENST00000486159 NFAT5O94916 1531 aa13.25□□□□□ -0.29
TMEM39A-208ENST00000486159 WDR17Q8IZU2 1322 aa13.25□□□□□ -0.29
TMEM39A-208ENST00000486159 TMC1Q8TDI8 760 aa13.25□□□□□ -0.29
TMEM39A-208ENST00000486159 MON2Q7Z3U7 1717 aa13.25□□□□□ -0.29
TMEM39A-208ENST00000486159 DDB1Q16531 1140 aa13.24□□□□□ -0.29
TMEM39A-208ENST00000486159 WNK3Q9BYP7 1800 aa13.24□□□□□ -0.29
TMEM39A-208ENST00000486159 SBNO2Q9Y2G9 1366 aa13.23□□□□□ -0.29
TMEM39A-208ENST00000486159 TTC21AQ8NDW8 1320 aa13.23□□□□□ -0.29
TMEM39A-208ENST00000486159 CSB-PGBD3P0DP91 1061 aa13.23□□□□□ -0.29
TMEM39A-208ENST00000486159 FBLN1P23142 703 aa13.23□□□□□ -0.29
TMEM39A-208ENST00000486159 PROM2Q8N271 834 aa13.22□□□□□ -0.29
TMEM39A-208ENST00000486159 KCNH5Q8NCM2 988 aa13.22□□□□□ -0.29
TMEM39A-208ENST00000486159 PDGFDQ9GZP0 370 aaPredicted RBP13.22□□□□□ -0.29
TMEM39A-208ENST00000486159 TONSLQ96HA7 1378 aa13.21□□□□□ -0.29
TMEM39A-208ENST00000486159 CARD10Q9BWT7 1032 aa13.21□□□□□ -0.29
TMEM39A-208ENST00000486159 ANO8Q9HCE9 1232 aaPredicted RBP13.21□□□□□ -0.29
TMEM39A-208ENST00000486159 OVOS2A0A0G2JMS6 1433 aa13.21□□□□□ -0.3
TMEM39A-208ENST00000486159 OVOS2A0A0J9YW53 1432 aa13.21□□□□□ -0.3
TMEM39A-208ENST00000486159 OVOS2Q6IE36 1432 aa13.21□□□□□ -0.3
TMEM39A-208ENST00000486159 KCNQ2O43526 872 aa13.2□□□□□ -0.3
TMEM39A-208ENST00000486159 A0A1W2PP64 1363 aa13.2□□□□□ -0.3
TMEM39A-208ENST00000486159 USP31Q70CQ4 1352 aa13.2□□□□□ -0.3
TMEM39A-208ENST00000486159 ST20-MTHFSA0A0A6YYL1 179 aa13.19□□□□□ -0.3
TMEM39A-208ENST00000486159 TESK2Q96S53 571 aa13.19□□□□□ -0.3
TMEM39A-208ENST00000486159 LTN1O94822 1766 aa13.19□□□□□ -0.3
TMEM39A-208ENST00000486159 PARD3Q8TEW0 1356 aa13.19□□□□□ -0.3
TMEM39A-208ENST00000486159 ACSBG1Q96GR2 724 aa13.18□□□□□ -0.3
TMEM39A-208ENST00000486159 ZNF316A6NFI3 1004 aaPredicted RBP13.17□□□□□ -0.3
TMEM39A-208ENST00000486159 EXOC5O00471 708 aa13.17□□□□□ -0.3
TMEM39A-208ENST00000486159 NBPF14Q5TI25 921 aa13.17□□□□□ -0.3
TMEM39A-208ENST00000486159 BCL11BQ9C0K0 894 aaPredicted RBP13.17□□□□□ -0.3
TMEM39A-208ENST00000486159 NLRP2Q9NX02 1062 aa13.17□□□□□ -0.3
TMEM39A-208ENST00000486159 USP54Q70EL1 1684 aa13.16□□□□□ -0.3
TMEM39A-208ENST00000486159 PLSCR1O15162 318 aa13.16□□□□□ -0.3
TMEM39A-208ENST00000486159 HDGFL2Q7Z4V5 671 aaPredicted RBP13.16□□□□□ -0.3
TMEM39A-208ENST00000486159 ANKRD24Q8TF21 1146 aa13.16□□□□□ -0.3
TMEM39A-208ENST00000486159 LTV1Q96GA3 475 aaPredicted RBP13.16□□□□□ -0.3
TMEM39A-208ENST00000486159 ERBB3P21860 1342 aa13.15□□□□□ -0.3
TMEM39A-208ENST00000486159 EDC4Q6P2E9 1401 aaKnown RBP13.14□□□□□ -0.31
TMEM39A-208ENST00000486159 CDCA7Q9BWT1 371 aaPredicted RBP13.14□□□□□ -0.31
TMEM39A-208ENST00000486159 RGPD2P0DJD1 1756 aa13.13□□□□□ -0.31
TMEM39A-208ENST00000486159 CCDC7Q96M83 1385 aa13.13□□□□□ -0.31
TMEM39A-208ENST00000486159 TXNRD1Q16881 649 aa13.13□□□□□ -0.31
TMEM39A-208ENST00000486159 TERF2IPQ9NYB0 399 aa13.13□□□□□ -0.31
TMEM39A-208ENST00000486159 TNS2Q63HR2 1409 aa13.13□□□□□ -0.31
TMEM39A-208ENST00000486159 ZBTB7AO95365 584 aa13.12□□□□□ -0.31
TMEM39A-208ENST00000486159 BCL9O00512 1426 aa13.12□□□□□ -0.31
TMEM39A-208ENST00000486159 RGPD3A6NKT7 1758 aaPredicted RBP13.12□□□□□ -0.31
TMEM39A-208ENST00000486159 RGPD4Q7Z3J3 1758 aa13.12□□□□□ -0.31
TMEM39A-208ENST00000486159 CASZ1Q86V15 1759 aa13.12□□□□□ -0.31
TMEM39A-208ENST00000486159 IL2RBP14784 551 aa13.11□□□□□ -0.31
TMEM39A-208ENST00000486159 IP6K1Q92551 441 aa13.11□□□□□ -0.31
TMEM39A-208ENST00000486159 ATF5Q9Y2D1 282 aaPredicted RBP13.11□□□□□ -0.31
TMEM39A-208ENST00000486159 MAP3K19Q56UN5 1328 aa13.11□□□□□ -0.31
TMEM39A-208ENST00000486159 ABCC6O95255 1503 aa13.1□□□□□ -0.31
TMEM39A-208ENST00000486159 C11orf95C9JLR9 678 aaPredicted RBP13.1□□□□□ -0.31
TMEM39A-208ENST00000486159 C1QTNF8P60827 252 aa13.1□□□□□ -0.31
TMEM39A-208ENST00000486159 RRS1Q15050 365 aaKnown RBP13.1□□□□□ -0.31
TMEM39A-208ENST00000486159 GGNBP2Q9H3C7 697 aa13.1□□□□□ -0.31
TMEM39A-208ENST00000486159 SPON1Q9HCB6 807 aa13.1□□□□□ -0.31
TMEM39A-208ENST00000486159 NHSQ6T4R5 1651 aa13.09□□□□□ -0.31
TMEM39A-208ENST00000486159 KCNQ4P56696 695 aa13.09□□□□□ -0.31
TMEM39A-208ENST00000486159 DDX54Q8TDD1 881 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms