RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 NINLQ9Y2I6 1382 aa19.95■□□□□ 0.79
SQSTM1-208ENST00000485412 NLRP6P59044 892 aa19.94■□□□□ 0.78
SQSTM1-208ENST00000485412 DDB1Q16531 1140 aa19.94■□□□□ 0.78
SQSTM1-208ENST00000485412 TOM1L2Q6ZVM7 507 aa19.93■□□□□ 0.78
SQSTM1-208ENST00000485412 AATKQ6ZMQ8 1374 aa19.93■□□□□ 0.78
SQSTM1-208ENST00000485412 PLSCR1O15162 318 aa19.92■□□□□ 0.78
SQSTM1-208ENST00000485412 NEUROD1Q13562 356 aa19.92■□□□□ 0.78
SQSTM1-208ENST00000485412 MON2Q7Z3U7 1717 aa19.91■□□□□ 0.78
SQSTM1-208ENST00000485412 CASZ1Q86V15 1759 aa19.91■□□□□ 0.78
SQSTM1-208ENST00000485412 AXIN2Q9Y2T1 843 aa19.91■□□□□ 0.78
SQSTM1-208ENST00000485412 ROCK2O75116 1388 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-208ENST00000485412 BCL11BQ9C0K0 894 aaPredicted RBP19.9■□□□□ 0.78
SQSTM1-208ENST00000485412 EVC2Q86UK5 1308 aa19.9■□□□□ 0.78
SQSTM1-208ENST00000485412 CPSF1Q10570 1443 aaKnown RBP19.89■□□□□ 0.77
SQSTM1-208ENST00000485412 ANO8Q9HCE9 1232 aaPredicted RBP19.89■□□□□ 0.77
SQSTM1-208ENST00000485412 NFAT5O94916 1531 aa19.88■□□□□ 0.77
SQSTM1-208ENST00000485412 TTC21BQ7Z4L5 1316 aa19.88■□□□□ 0.77
SQSTM1-208ENST00000485412 SOX12O15370 315 aa19.88■□□□□ 0.77
SQSTM1-208ENST00000485412 PTF1AQ7RTS3 328 aa19.88■□□□□ 0.77
SQSTM1-208ENST00000485412 WDR17Q8IZU2 1322 aa19.87■□□□□ 0.77
SQSTM1-208ENST00000485412 CDCA7Q9BWT1 371 aaPredicted RBP19.86■□□□□ 0.77
SQSTM1-208ENST00000485412 CSB-PGBD3P0DP91 1061 aa19.85■□□□□ 0.77
SQSTM1-208ENST00000485412 MARCH10Q8NA82 808 aaPredicted RBP19.85■□□□□ 0.77
SQSTM1-208ENST00000485412 MYOM1P52179 1685 aa19.84■□□□□ 0.77
SQSTM1-208ENST00000485412 ZBTB7AO95365 584 aa19.84■□□□□ 0.77
SQSTM1-208ENST00000485412 ARHGEF25Q86VW2 580 aa19.84■□□□□ 0.77
SQSTM1-208ENST00000485412 LTN1O94822 1766 aa19.83■□□□□ 0.77
SQSTM1-208ENST00000485412 CD163L1Q9NR16 1453 aa19.83■□□□□ 0.76
SQSTM1-208ENST00000485412 USP54Q70EL1 1684 aa19.83■□□□□ 0.76
SQSTM1-208ENST00000485412 KCNH5Q8NCM2 988 aa19.82■□□□□ 0.76
SQSTM1-208ENST00000485412 PDGFDQ9GZP0 370 aaPredicted RBP19.82■□□□□ 0.76
SQSTM1-208ENST00000485412 STK32BQ9NY57 414 aa19.82■□□□□ 0.76
SQSTM1-208ENST00000485412 BCL9O00512 1426 aa19.82■□□□□ 0.76
SQSTM1-208ENST00000485412 KTN1Q86UP2 1357 aaKnown RBP19.82■□□□□ 0.76
SQSTM1-208ENST00000485412 PROM2Q8N271 834 aa19.81■□□□□ 0.76
SQSTM1-208ENST00000485412 CARD10Q9BWT7 1032 aa19.81■□□□□ 0.76
SQSTM1-208ENST00000485412 EXOC5O00471 708 aa19.8■□□□□ 0.76
SQSTM1-208ENST00000485412 ATF5Q9Y2D1 282 aaPredicted RBP19.8■□□□□ 0.76
SQSTM1-208ENST00000485412 TXNRD1Q16881 649 aa19.79■□□□□ 0.76
SQSTM1-208ENST00000485412 ZNF692Q9BU19 519 aaPredicted RBP19.79■□□□□ 0.76
SQSTM1-208ENST00000485412 TTC21AQ8NDW8 1320 aa19.78■□□□□ 0.76
SQSTM1-208ENST00000485412 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.78■□□□□ 0.76
SQSTM1-208ENST00000485412 PTGER2P43116 358 aa19.77■□□□□ 0.76
SQSTM1-208ENST00000485412 SLC15A2Q16348 729 aa19.77■□□□□ 0.76
SQSTM1-208ENST00000485412 CCDC7Q96M83 1385 aa19.77■□□□□ 0.76
SQSTM1-208ENST00000485412 NHSQ6T4R5 1651 aa19.76■□□□□ 0.75
SQSTM1-208ENST00000485412 SBNO2Q9Y2G9 1366 aa19.76■□□□□ 0.75
SQSTM1-208ENST00000485412 NME9Q86XW9 330 aa19.76■□□□□ 0.75
SQSTM1-208ENST00000485412 TNS2Q63HR2 1409 aa19.76■□□□□ 0.75
SQSTM1-208ENST00000485412 KAT6BQ8WYB5 2073 aa19.75■□□□□ 0.75
SQSTM1-208ENST00000485412 CHD4Q14839 1912 aa19.75■□□□□ 0.75
SQSTM1-208ENST00000485412 ABCC6O95255 1503 aa19.75■□□□□ 0.75
SQSTM1-208ENST00000485412 FHDC1Q9C0D6 1143 aaPredicted RBP19.74■□□□□ 0.75
SQSTM1-208ENST00000485412 MTFR1LQ9H019 292 aa19.74■□□□□ 0.75
SQSTM1-208ENST00000485412 CARD11Q9BXL7 1154 aa19.73■□□□□ 0.75
SQSTM1-208ENST00000485412 USP31Q70CQ4 1352 aa19.72■□□□□ 0.75
SQSTM1-208ENST00000485412 ZNF784Q8NCA9 323 aaPredicted RBP19.72■□□□□ 0.75
SQSTM1-208ENST00000485412 SYT17Q9BSW7 474 aa19.72■□□□□ 0.75
SQSTM1-208ENST00000485412 SLC12A5Q9H2X9 1139 aa19.72■□□□□ 0.75
SQSTM1-208ENST00000485412 ACSBG1Q96GR2 724 aa19.71■□□□□ 0.75
SQSTM1-208ENST00000485412 BTAF1O14981 1849 aa19.7■□□□□ 0.74
SQSTM1-208ENST00000485412 TMC1Q8TDI8 760 aa19.7■□□□□ 0.74
SQSTM1-208ENST00000485412 ERBB3P21860 1342 aa19.7■□□□□ 0.74
SQSTM1-208ENST00000485412 A0A1W2PP64 1363 aa19.7■□□□□ 0.74
SQSTM1-208ENST00000485412 NLRP2Q9NX02 1062 aa19.69■□□□□ 0.74
SQSTM1-208ENST00000485412 RGPD2P0DJD1 1756 aa19.68■□□□□ 0.74
SQSTM1-208ENST00000485412 PAPPAQ13219 1627 aa19.68■□□□□ 0.74
SQSTM1-208ENST00000485412 EDC4Q6P2E9 1401 aaKnown RBP19.68■□□□□ 0.74
SQSTM1-208ENST00000485412 ARXQ96QS3 562 aa19.67■□□□□ 0.74
SQSTM1-208ENST00000485412 UTRNP46939 3433 aa19.66■□□□□ 0.74
SQSTM1-208ENST00000485412 IL2RBP14784 551 aa19.66■□□□□ 0.74
SQSTM1-208ENST00000485412 SGIP1Q9BQI5 828 aa19.66■□□□□ 0.74
SQSTM1-208ENST00000485412 TONSLQ96HA7 1378 aa19.65■□□□□ 0.74
SQSTM1-208ENST00000485412 ANKRD24Q8TF21 1146 aa19.64■□□□□ 0.73
SQSTM1-208ENST00000485412 HDGFL2Q7Z4V5 671 aaPredicted RBP19.63■□□□□ 0.73
SQSTM1-208ENST00000485412 TESK2Q96S53 571 aa19.63■□□□□ 0.73
SQSTM1-208ENST00000485412 SHANK3Q9BYB0 1731 aa19.62■□□□□ 0.73
SQSTM1-208ENST00000485412 FAM208AQ9UK61 1670 aaKnown RBP19.62■□□□□ 0.73
SQSTM1-208ENST00000485412 MAP3K5Q99683 1374 aa19.61■□□□□ 0.73
SQSTM1-208ENST00000485412 SENP3-EIF4A1A0A087X0R7 540 aa19.61■□□□□ 0.73
SQSTM1-208ENST00000485412 FBLN1P23142 703 aa19.61■□□□□ 0.73
SQSTM1-208ENST00000485412 ZNF827Q17R98 1081 aa19.61■□□□□ 0.73
SQSTM1-208ENST00000485412 QSER1Q2KHR3 1735 aa19.6■□□□□ 0.73
SQSTM1-208ENST00000485412 GPR162Q16538 588 aa19.6■□□□□ 0.73
SQSTM1-208ENST00000485412 KLHL34Q8N239 644 aa19.6■□□□□ 0.73
SQSTM1-208ENST00000485412 ST20-MTHFSA0A0A6YYL1 179 aa19.59■□□□□ 0.73
SQSTM1-208ENST00000485412 TERF2IPQ9NYB0 399 aa19.59■□□□□ 0.73
SQSTM1-208ENST00000485412 DOT1LQ8TEK3 1739 aa19.59■□□□□ 0.73
SQSTM1-208ENST00000485412 LTV1Q96GA3 475 aaPredicted RBP19.58■□□□□ 0.72
SQSTM1-208ENST00000485412 LRRC4BQ9NT99 713 aa19.58■□□□□ 0.72
SQSTM1-208ENST00000485412 TUBGCP6Q96RT7 1819 aa19.58■□□□□ 0.72
SQSTM1-208ENST00000485412 POLD1P28340 1107 aa19.57■□□□□ 0.72
SQSTM1-208ENST00000485412 C1QTNF8P60827 252 aa19.57■□□□□ 0.72
SQSTM1-208ENST00000485412 DDX54Q8TDD1 881 aaKnown RBP19.56■□□□□ 0.72
SQSTM1-208ENST00000485412 SLC16A10Q8TF71 515 aa19.56■□□□□ 0.72
SQSTM1-208ENST00000485412 SLC27A3Q5K4L6 730 aa19.55■□□□□ 0.72
SQSTM1-208ENST00000485412 PELP1Q8IZL8 1130 aaKnown RBP19.55■□□□□ 0.72
SQSTM1-208ENST00000485412 IP6K1Q92551 441 aa19.55■□□□□ 0.72
SQSTM1-208ENST00000485412 AKT1S1Q96B36 256 aa19.55■□□□□ 0.72
SQSTM1-208ENST00000485412 MAP3K19Q56UN5 1328 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms