RNA–Protein interactions for RNA: ENST00000482162.1

TMEM39A-207, Transcript of transmembrane protein 39A, humanhuman

TSL 5

Gene TMEM39A, Length 554 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-207ENST00000482162 NME9Q86XW9 330 aa13.73□□□□□ -0.21
TMEM39A-207ENST00000482162 USP54Q70EL1 1684 aa13.72□□□□□ -0.21
TMEM39A-207ENST00000482162 PDE3BQ13370 1112 aa13.72□□□□□ -0.21
TMEM39A-207ENST00000482162 TMC1Q8TDI8 760 aa13.72□□□□□ -0.21
TMEM39A-207ENST00000482162 CARD10Q9BWT7 1032 aa13.72□□□□□ -0.21
TMEM39A-207ENST00000482162 A0A1W2PP64 1363 aa13.71□□□□□ -0.21
TMEM39A-207ENST00000482162 ABCC6O95255 1503 aa13.71□□□□□ -0.21
TMEM39A-207ENST00000482162 C11orf95C9JLR9 678 aaPredicted RBP13.71□□□□□ -0.21
TMEM39A-207ENST00000482162 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.71□□□□□ -0.21
TMEM39A-207ENST00000482162 CAMKK2Q96RR4 588 aa13.71□□□□□ -0.21
TMEM39A-207ENST00000482162 CDCA7Q9BWT1 371 aaPredicted RBP13.71□□□□□ -0.21
TMEM39A-207ENST00000482162 TRIM37O94972 964 aa13.7□□□□□ -0.22
TMEM39A-207ENST00000482162 EN1Q05925 392 aaPredicted RBP13.7□□□□□ -0.22
TMEM39A-207ENST00000482162 TOM1L2Q6ZVM7 507 aa13.7□□□□□ -0.22
TMEM39A-207ENST00000482162 OVOS2A0A0J9YW53 1432 aa13.69□□□□□ -0.22
TMEM39A-207ENST00000482162 BCL9O00512 1426 aa13.69□□□□□ -0.22
TMEM39A-207ENST00000482162 OVOS2Q6IE36 1432 aa13.69□□□□□ -0.22
TMEM39A-207ENST00000482162 RGPD1P0DJD0 1748 aa13.69□□□□□ -0.22
TMEM39A-207ENST00000482162 PARP4Q9UKK3 1724 aaKnown RBP13.69□□□□□ -0.22
TMEM39A-207ENST00000482162 PARD3Q8TEW0 1356 aa13.69□□□□□ -0.22
TMEM39A-207ENST00000482162 USP47Q96K76 1375 aa13.69□□□□□ -0.22
TMEM39A-207ENST00000482162 TNS1Q9HBL0 1735 aaKnown RBP13.67□□□□□ -0.22
TMEM39A-207ENST00000482162 ZBTB7CA1YPR0 619 aa13.67□□□□□ -0.22
TMEM39A-207ENST00000482162 TMF1P82094 1093 aa13.67□□□□□ -0.22
TMEM39A-207ENST00000482162 PEAK1Q9H792 1746 aa13.67□□□□□ -0.22
TMEM39A-207ENST00000482162 SOX12O15370 315 aa13.66□□□□□ -0.22
TMEM39A-207ENST00000482162 EZH2Q15910 746 aaKnown RBP13.66□□□□□ -0.22
TMEM39A-207ENST00000482162 DDB1Q16531 1140 aa13.66□□□□□ -0.22
TMEM39A-207ENST00000482162 ANKRD36BQ8N2N9 1353 aa13.66□□□□□ -0.22
TMEM39A-207ENST00000482162 CCDC7Q96M83 1385 aa13.66□□□□□ -0.22
TMEM39A-207ENST00000482162 ERBB3P21860 1342 aa13.65□□□□□ -0.22
TMEM39A-207ENST00000482162 APBA3O96018 575 aa13.65□□□□□ -0.22
TMEM39A-207ENST00000482162 MARCH10Q8NA82 808 aaPredicted RBP13.65□□□□□ -0.22
TMEM39A-207ENST00000482162 IP6K1Q92551 441 aa13.65□□□□□ -0.22
TMEM39A-207ENST00000482162 RGPD5Q99666 1765 aa13.65□□□□□ -0.22
TMEM39A-207ENST00000482162 PLSCR1O15162 318 aa13.64□□□□□ -0.23
TMEM39A-207ENST00000482162 PCGF6Q9BYE7 350 aa13.64□□□□□ -0.23
TMEM39A-207ENST00000482162 OVOS2A0A0G2JMS6 1433 aa13.64□□□□□ -0.23
TMEM39A-207ENST00000482162 FYB1O15117 783 aa13.63□□□□□ -0.23
TMEM39A-207ENST00000482162 CSB-PGBD3P0DP91 1061 aa13.63□□□□□ -0.23
TMEM39A-207ENST00000482162 CDCA8Q53HL2 280 aa13.63□□□□□ -0.23
TMEM39A-207ENST00000482162 BCL11BQ9C0K0 894 aaPredicted RBP13.63□□□□□ -0.23
TMEM39A-207ENST00000482162 LRRC37A3O60309 1634 aa13.63□□□□□ -0.23
TMEM39A-207ENST00000482162 EXOC5O00471 708 aa13.61□□□□□ -0.23
TMEM39A-207ENST00000482162 ANKRD24Q8TF21 1146 aa13.61□□□□□ -0.23
TMEM39A-207ENST00000482162 COG3Q96JB2 828 aa13.61□□□□□ -0.23
TMEM39A-207ENST00000482162 CARD14Q9BXL6 1004 aa13.61□□□□□ -0.23
TMEM39A-207ENST00000482162 MAP3K19Q56UN5 1328 aa13.61□□□□□ -0.23
TMEM39A-207ENST00000482162 PTF1AQ7RTS3 328 aa13.6□□□□□ -0.23
TMEM39A-207ENST00000482162 NLRP2Q9NX02 1062 aa13.6□□□□□ -0.23
TMEM39A-207ENST00000482162 PSDA5PKW4 1024 aaPredicted RBP13.59□□□□□ -0.23
TMEM39A-207ENST00000482162 IL2RBP14784 551 aa13.59□□□□□ -0.23
TMEM39A-207ENST00000482162 FBLN1P23142 703 aa13.59□□□□□ -0.23
TMEM39A-207ENST00000482162 R3HDM1Q15032 1099 aaKnown RBP13.59□□□□□ -0.23
TMEM39A-207ENST00000482162 PROM2Q8N271 834 aa13.59□□□□□ -0.23
TMEM39A-207ENST00000482162 SBF2Q86WG5 1849 aa13.59□□□□□ -0.23
TMEM39A-207ENST00000482162 WNK3Q9BYP7 1800 aa13.59□□□□□ -0.23
TMEM39A-207ENST00000482162 LTN1O94822 1766 aa13.58□□□□□ -0.23
TMEM39A-207ENST00000482162 TNS2Q63HR2 1409 aa13.58□□□□□ -0.24
TMEM39A-207ENST00000482162 HOXC9P31274 260 aa13.58□□□□□ -0.24
TMEM39A-207ENST00000482162 LRP5O75197 1615 aa13.57□□□□□ -0.24
TMEM39A-207ENST00000482162 RREB1Q92766 1687 aa13.57□□□□□ -0.24
TMEM39A-207ENST00000482162 GGNBP2Q9H3C7 697 aa13.56□□□□□ -0.24
TMEM39A-207ENST00000482162 RTL1A6NKG5 1358 aa13.55□□□□□ -0.24
TMEM39A-207ENST00000482162 KIF24Q5T7B8 1368 aa13.55□□□□□ -0.24
TMEM39A-207ENST00000482162 RGPD3A6NKT7 1758 aaPredicted RBP13.55□□□□□ -0.24
TMEM39A-207ENST00000482162 RGPD4Q7Z3J3 1758 aa13.55□□□□□ -0.24
TMEM39A-207ENST00000482162 NUP188Q5SRE5 1749 aa13.54□□□□□ -0.24
TMEM39A-207ENST00000482162 KCNQ2O43526 872 aa13.54□□□□□ -0.24
TMEM39A-207ENST00000482162 AMPHP49418 695 aa13.54□□□□□ -0.24
TMEM39A-207ENST00000482162 NBPF14Q5TI25 921 aa13.54□□□□□ -0.24
TMEM39A-207ENST00000482162 RRS1Q15050 365 aaKnown RBP13.53□□□□□ -0.24
TMEM39A-207ENST00000482162 CCER1Q8TC90 406 aaPredicted RBP13.53□□□□□ -0.24
TMEM39A-207ENST00000482162 EIF4G2P78344 907 aaKnown RBP eCLIP13.52□□□□□ -0.25
TMEM39A-207ENST00000482162 NBPF6Q5VWK0 638 aa13.52□□□□□ -0.25
TMEM39A-207ENST00000482162 NBPF4Q96M43 638 aa13.52□□□□□ -0.25
TMEM39A-207ENST00000482162 INSRP06213 1382 aa13.52□□□□□ -0.25
TMEM39A-207ENST00000482162 MYOM1P52179 1685 aa13.52□□□□□ -0.25
TMEM39A-207ENST00000482162 FAM208AQ9UK61 1670 aaKnown RBP13.51□□□□□ -0.25
TMEM39A-207ENST00000482162 TXNRD1Q16881 649 aa13.51□□□□□ -0.25
TMEM39A-207ENST00000482162 LTV1Q96GA3 475 aaPredicted RBP13.51□□□□□ -0.25
TMEM39A-207ENST00000482162 NSD3Q9BZ95 1437 aa13.5□□□□□ -0.25
TMEM39A-207ENST00000482162 HSPA5P11021 654 aaKnown RBP13.5□□□□□ -0.25
TMEM39A-207ENST00000482162 HSP90AB2PQ58FF8 381 aa13.5□□□□□ -0.25
TMEM39A-207ENST00000482162 ANO8Q9HCE9 1232 aaPredicted RBP13.5□□□□□ -0.25
TMEM39A-207ENST00000482162 CGNL1Q0VF96 1302 aa13.49□□□□□ -0.25
TMEM39A-207ENST00000482162 FLT4P35916 1363 aa13.48□□□□□ -0.25
TMEM39A-207ENST00000482162 NHSQ6T4R5 1651 aa13.48□□□□□ -0.25
TMEM39A-207ENST00000482162 ZCRB1Q8TBF4 217 aaKnown RBP13.48□□□□□ -0.25
TMEM39A-207ENST00000482162 WASHC2AQ641Q2 1341 aa13.47□□□□□ -0.25
TMEM39A-207ENST00000482162 ACSBG1Q96GR2 724 aa13.47□□□□□ -0.25
TMEM39A-207ENST00000482162 MEGF6O75095 1541 aa13.47□□□□□ -0.25
TMEM39A-207ENST00000482162 NCAPD2Q15021 1401 aa13.47□□□□□ -0.25
TMEM39A-207ENST00000482162 DDX54Q8TDD1 881 aaKnown RBP13.46□□□□□ -0.25
TMEM39A-207ENST00000482162 POLKQ9UBT6 870 aa13.46□□□□□ -0.25
TMEM39A-207ENST00000482162 EMILIN1Q9Y6C2 1016 aa13.46□□□□□ -0.25
TMEM39A-207ENST00000482162 KIF20BQ96Q89 1820 aa13.46□□□□□ -0.26
TMEM39A-207ENST00000482162 SLC15A2Q16348 729 aa13.45□□□□□ -0.26
TMEM39A-207ENST00000482162 SPON1Q9HCB6 807 aa13.45□□□□□ -0.26
TMEM39A-207ENST00000482162 RGPD2P0DJD1 1756 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms