RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 PEAK1Q9H792 1746 aa13.59□□□□□ -0.23
PRPF38A-202ENST00000474048 PNPLA6Q8IY17 1366 aa13.58□□□□□ -0.23
PRPF38A-202ENST00000474048 BLMP54132 1417 aaPredicted RBP13.58□□□□□ -0.24
PRPF38A-202ENST00000474048 HOXC9P31274 260 aa13.58□□□□□ -0.24
PRPF38A-202ENST00000474048 ZC3H6P61129 1189 aaKnown RBP13.58□□□□□ -0.24
PRPF38A-202ENST00000474048 PIAS4Q8N2W9 510 aaPredicted RBP13.58□□□□□ -0.24
PRPF38A-202ENST00000474048 ABCA3Q99758 1704 aa13.58□□□□□ -0.24
PRPF38A-202ENST00000474048 CRYBG1Q9Y4K1 1723 aa13.57□□□□□ -0.24
PRPF38A-202ENST00000474048 IP6K1Q92551 441 aa13.57□□□□□ -0.24
PRPF38A-202ENST00000474048 PRDM11Q9NQV5 511 aa13.57□□□□□ -0.24
PRPF38A-202ENST00000474048 ABCC6O95255 1503 aa13.57□□□□□ -0.24
PRPF38A-202ENST00000474048 COL16A1Q07092 1604 aaPredicted RBP13.57□□□□□ -0.24
PRPF38A-202ENST00000474048 CSB-PGBD3P0DP91 1061 aa13.56□□□□□ -0.24
PRPF38A-202ENST00000474048 HSP90AB2PQ58FF8 381 aa13.56□□□□□ -0.24
PRPF38A-202ENST00000474048 CCDC146Q8IYE0 955 aa13.56□□□□□ -0.24
PRPF38A-202ENST00000474048 CABLES1Q8TDN4 633 aa13.56□□□□□ -0.24
PRPF38A-202ENST00000474048 RUNDC1Q96C34 613 aa13.56□□□□□ -0.24
PRPF38A-202ENST00000474048 LTV1Q96GA3 475 aaPredicted RBP13.56□□□□□ -0.24
PRPF38A-202ENST00000474048 COL22A1Q8NFW1 1626 aaPredicted RBP13.55□□□□□ -0.24
PRPF38A-202ENST00000474048 EIF4A2Q14240 407 aaKnown RBP13.55□□□□□ -0.24
PRPF38A-202ENST00000474048 ARHGEF25Q86VW2 580 aa13.55□□□□□ -0.24
PRPF38A-202ENST00000474048 FAM208AQ9UK61 1670 aaKnown RBP13.54□□□□□ -0.24
PRPF38A-202ENST00000474048 FCHSD2O94868 740 aa13.54□□□□□ -0.24
PRPF38A-202ENST00000474048 IL13P35225 146 aa13.54□□□□□ -0.24
PRPF38A-202ENST00000474048 NGEFQ8N5V2 710 aa13.54□□□□□ -0.24
PRPF38A-202ENST00000474048 ZBED9Q6R2W3 1325 aa13.54□□□□□ -0.24
PRPF38A-202ENST00000474048 KIAA0232Q92628 1395 aa13.54□□□□□ -0.24
PRPF38A-202ENST00000474048 HMOX1P09601 288 aa13.53□□□□□ -0.24
PRPF38A-202ENST00000474048 CPDO75976 1380 aa13.53□□□□□ -0.24
PRPF38A-202ENST00000474048 PRKAR2BP31323 418 aa13.52□□□□□ -0.25
PRPF38A-202ENST00000474048 ANKRD24Q8TF21 1146 aa13.52□□□□□ -0.25
PRPF38A-202ENST00000474048 SALL2Q9Y467 1007 aaPredicted RBP13.52□□□□□ -0.25
PRPF38A-202ENST00000474048 JCADQ9P266 1359 aa13.51□□□□□ -0.25
PRPF38A-202ENST00000474048 SULT6B1Q6IMI4 303 aa13.51□□□□□ -0.25
PRPF38A-202ENST00000474048 RGPD5Q99666 1765 aa13.5□□□□□ -0.25
PRPF38A-202ENST00000474048 APAF1O14727 1248 aa13.5□□□□□ -0.25
PRPF38A-202ENST00000474048 EVA1CP58658 441 aa13.5□□□□□ -0.25
PRPF38A-202ENST00000474048 CHRNA2Q15822 529 aa13.5□□□□□ -0.25
PRPF38A-202ENST00000474048 COL14A1Q05707 1796 aaKnown RBP13.5□□□□□ -0.25
PRPF38A-202ENST00000474048 NUTM2BA6NNL0 878 aaPredicted RBP13.49□□□□□ -0.25
PRPF38A-202ENST00000474048 NUTM2EB1AL46 878 aaPredicted RBP13.49□□□□□ -0.25
PRPF38A-202ENST00000474048 LMOD3Q0VAK6 560 aa13.49□□□□□ -0.25
PRPF38A-202ENST00000474048 NEUROD2Q15784 382 aa13.49□□□□□ -0.25
PRPF38A-202ENST00000474048 NUTM2AQ8IVF1 878 aaPredicted RBP13.49□□□□□ -0.25
PRPF38A-202ENST00000474048 NLRP2Q9NX02 1062 aa13.49□□□□□ -0.25
PRPF38A-202ENST00000474048 RGPD1P0DJD0 1748 aa13.49□□□□□ -0.25
PRPF38A-202ENST00000474048 IGSF1Q8N6C5 1336 aa13.48□□□□□ -0.25
PRPF38A-202ENST00000474048 TCP11L2Q8N4U5 519 aa13.48□□□□□ -0.25
PRPF38A-202ENST00000474048 RSPH6AQ9H0K4 717 aa13.48□□□□□ -0.25
PRPF38A-202ENST00000474048 ERBB3P21860 1342 aa13.47□□□□□ -0.25
PRPF38A-202ENST00000474048 SENP3-EIF4A1A0A087X0R7 540 aa13.47□□□□□ -0.25
PRPF38A-202ENST00000474048 PDE3BQ13370 1112 aa13.47□□□□□ -0.25
PRPF38A-202ENST00000474048 MEX3CQ5U5Q3 659 aaKnown RBP13.47□□□□□ -0.25
PRPF38A-202ENST00000474048 EYA1Q99502 592 aa13.47□□□□□ -0.25
PRPF38A-202ENST00000474048 SPATA31A6Q5VVP1 1343 aa13.46□□□□□ -0.25
PRPF38A-202ENST00000474048 COL18A1P39060 1754 aa13.46□□□□□ -0.25
PRPF38A-202ENST00000474048 ADAMTS2O95450 1211 aa13.46□□□□□ -0.25
PRPF38A-202ENST00000474048 TOM1L2Q6ZVM7 507 aa13.46□□□□□ -0.25
PRPF38A-202ENST00000474048 RAPGEF4Q8WZA2 1011 aa13.46□□□□□ -0.25
PRPF38A-202ENST00000474048 STRN4Q9NRL3 753 aa13.46□□□□□ -0.25
PRPF38A-202ENST00000474048 CALD1Q05682 793 aaKnown RBP13.45□□□□□ -0.26
PRPF38A-202ENST00000474048 GAS2L2Q8NHY3 880 aa13.45□□□□□ -0.26
PRPF38A-202ENST00000474048 RRP7AQ9Y3A4 280 aaKnown RBP13.45□□□□□ -0.26
PRPF38A-202ENST00000474048 RGPD2P0DJD1 1756 aa13.45□□□□□ -0.26
PRPF38A-202ENST00000474048 PLCH1Q4KWH8 1693 aa13.44□□□□□ -0.26
PRPF38A-202ENST00000474048 LMO7Q8WWI1 1683 aa13.44□□□□□ -0.26
PRPF38A-202ENST00000474048 RIPK4P57078 832 aa13.44□□□□□ -0.26
PRPF38A-202ENST00000474048 NFE2L2Q16236 605 aa13.44□□□□□ -0.26
PRPF38A-202ENST00000474048 AEBP1Q8IUX7 1158 aa13.44□□□□□ -0.26
PRPF38A-202ENST00000474048 USHBP1Q8N6Y0 703 aa13.44□□□□□ -0.26
PRPF38A-202ENST00000474048 RTF1Q92541 710 aaKnown RBP13.44□□□□□ -0.26
PRPF38A-202ENST00000474048 KDRP35968 1356 aa13.44□□□□□ -0.26
PRPF38A-202ENST00000474048 CAMTA1Q9Y6Y1 1673 aa13.44□□□□□ -0.26
PRPF38A-202ENST00000474048 WDR17Q8IZU2 1322 aa13.43□□□□□ -0.26
PRPF38A-202ENST00000474048 COL5A2P05997 1499 aaPredicted RBP13.43□□□□□ -0.26
PRPF38A-202ENST00000474048 TATP17735 454 aaPredicted RBP13.43□□□□□ -0.26
PRPF38A-202ENST00000474048 TMPOP42166 694 aaKnown RBP13.43□□□□□ -0.26
PRPF38A-202ENST00000474048 GOLGA2Q08379 1002 aa13.43□□□□□ -0.26
PRPF38A-202ENST00000474048 NCBP3Q53F19 620 aaKnown RBP13.43□□□□□ -0.26
PRPF38A-202ENST00000474048 PLEKHF1Q96S99 279 aa13.43□□□□□ -0.26
PRPF38A-202ENST00000474048 BTG4Q9NY30 223 aa13.43□□□□□ -0.26
PRPF38A-202ENST00000474048 AXIN2Q9Y2T1 843 aa13.43□□□□□ -0.26
PRPF38A-202ENST00000474048 HSPA1LP34931 641 aa13.42□□□□□ -0.26
PRPF38A-202ENST00000474048 PLEKHO1Q53GL0 409 aaPredicted RBP13.42□□□□□ -0.26
PRPF38A-202ENST00000474048 C1orf141Q5JVX7 400 aa13.42□□□□□ -0.26
PRPF38A-202ENST00000474048 NBPF6Q5VWK0 638 aa13.42□□□□□ -0.26
PRPF38A-202ENST00000474048 NBPF4Q96M43 638 aa13.42□□□□□ -0.26
PRPF38A-202ENST00000474048 PARP4Q9UKK3 1724 aaKnown RBP13.42□□□□□ -0.26
PRPF38A-202ENST00000474048 FAM83GA6ND36 823 aa13.41□□□□□ -0.26
PRPF38A-202ENST00000474048 CCDC27Q2M243 656 aa13.41□□□□□ -0.26
PRPF38A-202ENST00000474048 AMOTQ4VCS5 1084 aa13.41□□□□□ -0.26
PRPF38A-202ENST00000474048 CCDC9Q9Y3X0 531 aaKnown RBP13.41□□□□□ -0.26
PRPF38A-202ENST00000474048 NWD2Q9ULI1 1742 aa13.41□□□□□ -0.26
PRPF38A-202ENST00000474048 CRB1P82279 1406 aa13.4□□□□□ -0.26
PRPF38A-202ENST00000474048 NGLY1Q96IV0 654 aa13.4□□□□□ -0.26
PRPF38A-202ENST00000474048 MYH16Q9H6N6 1097 aa13.4□□□□□ -0.26
PRPF38A-202ENST00000474048 SPG7Q9UQ90 795 aa13.4□□□□□ -0.26
PRPF38A-202ENST00000474048 DLG5Q8TDM6 1919 aa13.4□□□□□ -0.26
PRPF38A-202ENST00000474048 E9PSI1 815 aa13.39□□□□□ -0.27
PRPF38A-202ENST00000474048 WDR63Q8IWG1 891 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms