RNA–Protein interactions for RNA: ENST00000469356.3

SREBF1-208, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 1,323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-208ENST00000469356 USP21Q9UK80 565 aa31.02■■■□□ 2.56
SREBF1-208ENST00000469356 FLT4P35916 1363 aa31.02■■■□□ 2.56
SREBF1-208ENST00000469356 SLIT2O94813 1529 aa31.01■■■□□ 2.56
SREBF1-208ENST00000469356 PLCH1Q4KWH8 1693 aa31.01■■■□□ 2.56
SREBF1-208ENST00000469356 PARD3Q8TEW0 1356 aa31.01■■■□□ 2.55
SREBF1-208ENST00000469356 ANP32CO43423 234 aa31■■■□□ 2.55
SREBF1-208ENST00000469356 UNC5CLQ8IV45 518 aa31■■■□□ 2.55
SREBF1-208ENST00000469356 BLMP54132 1417 aaPredicted RBP31■■■□□ 2.55
SREBF1-208ENST00000469356 HOXC9P31274 260 aa30.99■■■□□ 2.55
SREBF1-208ENST00000469356 EMILIN1Q9Y6C2 1016 aa30.99■■■□□ 2.55
SREBF1-208ENST00000469356 COL18A1P39060 1754 aa30.99■■■□□ 2.55
SREBF1-208ENST00000469356 LMO7Q8WWI1 1683 aa30.98■■■□□ 2.55
SREBF1-208ENST00000469356 PRKRIP1Q9H875 184 aaPredicted RBP30.96■■■□□ 2.55
SREBF1-208ENST00000469356 STRN4Q9NRL3 753 aa30.96■■■□□ 2.55
SREBF1-208ENST00000469356 CAMTA1Q9Y6Y1 1673 aa30.95■■■□□ 2.55
SREBF1-208ENST00000469356 SMG6Q86US8 1419 aaKnown RBP30.95■■■□□ 2.55
SREBF1-208ENST00000469356 CSB-PGBD3P0DP91 1061 aa30.95■■■□□ 2.54
SREBF1-208ENST00000469356 PPP2R1AP30153 589 aa30.95■■■□□ 2.54
SREBF1-208ENST00000469356 MTHFSP49914 203 aa30.95■■■□□ 2.54
SREBF1-208ENST00000469356 TRPC5Q9UL62 973 aaPredicted RBP30.95■■■□□ 2.54
SREBF1-208ENST00000469356 AXIN2Q9Y2T1 843 aa30.95■■■□□ 2.54
SREBF1-208ENST00000469356 INSRP06213 1382 aa30.94■■■□□ 2.54
SREBF1-208ENST00000469356 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.94■■■□□ 2.54
SREBF1-208ENST00000469356 RGPD5Q99666 1765 aa30.94■■■□□ 2.54
SREBF1-208ENST00000469356 CFAP53Q96M91 514 aa30.94■■■□□ 2.54
SREBF1-208ENST00000469356 BCL9LQ86UU0 1499 aa30.92■■■□□ 2.54
SREBF1-208ENST00000469356 ANKRD24Q8TF21 1146 aa30.92■■■□□ 2.54
SREBF1-208ENST00000469356 MYBBP1AQ9BQG0 1328 aaKnown RBP30.92■■■□□ 2.54
SREBF1-208ENST00000469356 COL5A2P05997 1499 aaPredicted RBP30.91■■■□□ 2.54
SREBF1-208ENST00000469356 CDK12Q9NYV4 1490 aaPredicted RBP30.91■■■□□ 2.54
SREBF1-208ENST00000469356 CCDC9Q9Y3X0 531 aaKnown RBP30.91■■■□□ 2.54
SREBF1-208ENST00000469356 WDR17Q8IZU2 1322 aa30.9■■■□□ 2.54
SREBF1-208ENST00000469356 VPS72Q15906 364 aa30.9■■■□□ 2.54
SREBF1-208ENST00000469356 HSP90AB2PQ58FF8 381 aa30.9■■■□□ 2.54
SREBF1-208ENST00000469356 QTRT2Q9H974 415 aaKnown RBP30.9■■■□□ 2.54
SREBF1-208ENST00000469356 NRAPQ86VF7 1730 aa30.9■■■□□ 2.54
SREBF1-208ENST00000469356 ERBB3P21860 1342 aa30.89■■■□□ 2.54
SREBF1-208ENST00000469356 PEAK1Q9H792 1746 aa30.89■■■□□ 2.54
SREBF1-208ENST00000469356 TOM1L2Q6ZVM7 507 aa30.88■■■□□ 2.53
SREBF1-208ENST00000469356 LTV1Q96GA3 475 aaPredicted RBP30.88■■■□□ 2.53
SREBF1-208ENST00000469356 DIEXFQ68CQ4 756 aaKnown RBP30.86■■■□□ 2.53
SREBF1-208ENST00000469356 FAM208AQ9UK61 1670 aaKnown RBP30.85■■■□□ 2.53
SREBF1-208ENST00000469356 LARP1Q6PKG0 1096 aaKnown RBP30.84■■■□□ 2.53
SREBF1-208ENST00000469356 NLRP2Q9NX02 1062 aa30.84■■■□□ 2.53
SREBF1-208ENST00000469356 ATRNO75882 1429 aa30.84■■■□□ 2.53
SREBF1-208ENST00000469356 CRB1P82279 1406 aa30.84■■■□□ 2.53
SREBF1-208ENST00000469356 CARD10Q9BWT7 1032 aa30.82■■■□□ 2.52
SREBF1-208ENST00000469356 DIAPH1O60610 1272 aaKnown RBP30.81■■■□□ 2.52
SREBF1-208ENST00000469356 GJD4Q96KN9 370 aaPredicted RBP30.81■■■□□ 2.52
SREBF1-208ENST00000469356 THRAP3Q9Y2W1 955 aaKnown RBP30.81■■■□□ 2.52
SREBF1-208ENST00000469356 SPATA31A5Q5VU36 1347 aa30.81■■■□□ 2.52
SREBF1-208ENST00000469356 SPATA31A7Q8IWB4 1347 aa30.81■■■□□ 2.52
SREBF1-208ENST00000469356 RBM6P78332 1123 aaKnown RBP30.8■■■□□ 2.52
SREBF1-208ENST00000469356 NUDCQ9Y266 331 aa30.8■■■□□ 2.52
SREBF1-208ENST00000469356 EIF4A2Q14240 407 aaKnown RBP30.79■■■□□ 2.52
SREBF1-208ENST00000469356 RGS17Q9UGC6 210 aaPredicted RBP30.79■■■□□ 2.52
SREBF1-208ENST00000469356 SPATA31A1Q5TZJ5 1347 aa30.78■■■□□ 2.52
SREBF1-208ENST00000469356 RXRBP28702 533 aa30.77■■■□□ 2.52
SREBF1-208ENST00000469356 TCP11L2Q8N4U5 519 aa30.77■■■□□ 2.52
SREBF1-208ENST00000469356 USP35Q9P2H5 1018 aa30.76■■■□□ 2.52
SREBF1-208ENST00000469356 IL13P35225 146 aa30.73■■■□□ 2.51
SREBF1-208ENST00000469356 CDCA7Q9BWT1 371 aaPredicted RBP30.73■■■□□ 2.51
SREBF1-208ENST00000469356 NBPF6Q5VWK0 638 aa30.72■■■□□ 2.51
SREBF1-208ENST00000469356 POTEAQ6S8J7 498 aa30.72■■■□□ 2.51
SREBF1-208ENST00000469356 BARGINQ6ZT62 677 aa30.72■■■□□ 2.51
SREBF1-208ENST00000469356 NBPF4Q96M43 638 aa30.72■■■□□ 2.51
SREBF1-208ENST00000469356 EYA1Q99502 592 aa30.72■■■□□ 2.51
SREBF1-208ENST00000469356 RGPD2P0DJD1 1756 aa30.69■■■□□ 2.5
SREBF1-208ENST00000469356 U2SURPO15042 1029 aaKnown RBP30.69■■■□□ 2.5
SREBF1-208ENST00000469356 COL3A1P02461 1466 aaPredicted RBP30.68■■■□□ 2.5
SREBF1-208ENST00000469356 IGSF1Q8N6C5 1336 aa30.68■■■□□ 2.5
SREBF1-208ENST00000469356 GLI3P10071 1580 aa30.67■■■□□ 2.5
SREBF1-208ENST00000469356 A0A0G2JS52 829 aa30.67■■■□□ 2.5
SREBF1-208ENST00000469356 MYT1Q01538 1121 aa30.67■■■□□ 2.5
SREBF1-208ENST00000469356 FAM98CQ17RN3 349 aaKnown RBP30.67■■■□□ 2.5
SREBF1-208ENST00000469356 RAPGEF4Q8WZA2 1011 aa30.67■■■□□ 2.5
SREBF1-208ENST00000469356 IL2RBP14784 551 aa30.66■■■□□ 2.5
SREBF1-208ENST00000469356 ONECUT3O60422 494 aaPredicted RBP30.64■■■□□ 2.5
SREBF1-208ENST00000469356 TATP17735 454 aaPredicted RBP30.64■■■□□ 2.5
SREBF1-208ENST00000469356 USHBP1Q8N6Y0 703 aa30.64■■■□□ 2.5
SREBF1-208ENST00000469356 U2AF1L5P0DN76 240 aaPredicted RBP30.62■■■□□ 2.49
SREBF1-208ENST00000469356 U2AF1Q01081 240 aaKnown RBP eCLIP30.62■■■□□ 2.49
SREBF1-208ENST00000469356 WDR43Q15061 677 aaKnown RBP eCLIP30.62■■■□□ 2.49
SREBF1-208ENST00000469356 SULT6B1Q6IMI4 303 aa30.62■■■□□ 2.49
SREBF1-208ENST00000469356 PNNQ9H307 717 aaKnown RBP30.62■■■□□ 2.49
SREBF1-208ENST00000469356 MRS2Q9HD23 443 aa30.61■■■□□ 2.49
SREBF1-208ENST00000469356 NCAPD2Q15021 1401 aa30.61■■■□□ 2.49
SREBF1-208ENST00000469356 RGPD1P0DJD0 1748 aa30.6■■■□□ 2.49
SREBF1-208ENST00000469356 PLEKHG2Q9H7P9 1386 aa30.59■■■□□ 2.49
SREBF1-208ENST00000469356 WNK3Q9BYP7 1800 aa30.58■■■□□ 2.49
SREBF1-208ENST00000469356 EXOC5O00471 708 aa30.58■■■□□ 2.49
SREBF1-208ENST00000469356 SEPT12Q8IYM1 358 aa30.58■■■□□ 2.49
SREBF1-208ENST00000469356 CCER2I3L3R5 266 aa30.57■■■□□ 2.48
SREBF1-208ENST00000469356 NEFMP07197 916 aa30.57■■■□□ 2.48
SREBF1-208ENST00000469356 DDB1Q16531 1140 aa30.57■■■□□ 2.48
SREBF1-208ENST00000469356 KDRP35968 1356 aa30.57■■■□□ 2.48
SREBF1-208ENST00000469356 PARP4Q9UKK3 1724 aaKnown RBP30.56■■■□□ 2.48
SREBF1-208ENST00000469356 DISP2A7MBM2 1401 aa30.56■■■□□ 2.48
SREBF1-208ENST00000469356 FCHSD2O94868 740 aa30.55■■■□□ 2.48
SREBF1-208ENST00000469356 HMOX1P09601 288 aa30.55■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms