RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 RAD21O60216 631 aa6.27□□□□□ -1.41
TMEM39A-204ENST00000468545 CTHP32929 405 aa6.27□□□□□ -1.41
TMEM39A-204ENST00000468545 KCNH2Q12809 1159 aa6.27□□□□□ -1.41
TMEM39A-204ENST00000468545 NR6A1Q15406 480 aa6.27□□□□□ -1.41
TMEM39A-204ENST00000468545 CYB5RLQ6IPT4 315 aa6.27□□□□□ -1.41
TMEM39A-204ENST00000468545 CCDC24Q8N4L8 307 aa6.27□□□□□ -1.41
TMEM39A-204ENST00000468545 PNMA1Q8ND90 353 aa6.27□□□□□ -1.41
TMEM39A-204ENST00000468545 COG6Q9Y2V7 657 aa6.27□□□□□ -1.41
TMEM39A-204ENST00000468545 KIAA0556O60303 1618 aa6.27□□□□□ -1.41
TMEM39A-204ENST00000468545 SAMD9Q5K651 1589 aa6.27□□□□□ -1.41
TMEM39A-204ENST00000468545 FMN1Q68DA7 1419 aa6.26□□□□□ -1.41
TMEM39A-204ENST00000468545 KANK4Q5T7N3 995 aaPredicted RBP6.26□□□□□ -1.41
TMEM39A-204ENST00000468545 Q6ZNB5 142 aa6.26□□□□□ -1.41
TMEM39A-204ENST00000468545 EPS8L1Q8TE68 723 aa6.26□□□□□ -1.41
TMEM39A-204ENST00000468545 POM121Q96HA1 1249 aa6.26□□□□□ -1.41
TMEM39A-204ENST00000468545 TBC1D2BQ9UPU7 963 aa6.26□□□□□ -1.41
TMEM39A-204ENST00000468545 A6NJR5 290 aa6.25□□□□□ -1.41
TMEM39A-204ENST00000468545 PPEF1O14829 653 aaPredicted RBP6.25□□□□□ -1.41
TMEM39A-204ENST00000468545 GFRA3O60609 400 aa6.25□□□□□ -1.41
TMEM39A-204ENST00000468545 ARMC2Q8NEN0 867 aa6.25□□□□□ -1.41
TMEM39A-204ENST00000468545 CLUAP1Q96AJ1 413 aa6.25□□□□□ -1.41
TMEM39A-204ENST00000468545 UNC93B1Q9H1C4 597 aa6.25□□□□□ -1.41
TMEM39A-204ENST00000468545 GDPD2Q9HCC8 539 aa6.25□□□□□ -1.41
TMEM39A-204ENST00000468545 FKBPLQ9UIM3 349 aa6.25□□□□□ -1.41
TMEM39A-204ENST00000468545 ZC3H4Q9UPT8 1303 aaKnown RBP6.25□□□□□ -1.41
TMEM39A-204ENST00000468545 PLB1Q6P1J6 1458 aa6.24□□□□□ -1.41
TMEM39A-204ENST00000468545 GPR37L1O60883 481 aa6.24□□□□□ -1.41
TMEM39A-204ENST00000468545 ZMYND15Q9H091 742 aa6.24□□□□□ -1.41
TMEM39A-204ENST00000468545 V9GY48 417 aaPredicted RBP6.24□□□□□ -1.41
TMEM39A-204ENST00000468545 SHROOM2Q13796 1616 aa6.24□□□□□ -1.41
TMEM39A-204ENST00000468545 CASKIN1Q8WXD9 1431 aa6.24□□□□□ -1.41
TMEM39A-204ENST00000468545 ABL2P42684 1182 aa6.23□□□□□ -1.41
TMEM39A-204ENST00000468545 NBPF14Q5TI25 921 aa6.23□□□□□ -1.41
TMEM39A-204ENST00000468545 PTCRAQ6ISU1 281 aaPredicted RBP6.23□□□□□ -1.41
TMEM39A-204ENST00000468545 PROSER2Q86WR7 435 aaPredicted RBP6.23□□□□□ -1.41
TMEM39A-204ENST00000468545 WWC1Q8IX03 1113 aa6.23□□□□□ -1.41
TMEM39A-204ENST00000468545 GPKOWQ92917 476 aaPredicted RBP eCLIP6.23□□□□□ -1.413e-6■■■□□ 17.4
TMEM39A-204ENST00000468545 UACAQ9BZF9 1416 aa6.23□□□□□ -1.41
TMEM39A-204ENST00000468545 PLEKHD1A6NEE1 506 aa6.22□□□□□ -1.41
TMEM39A-204ENST00000468545 LAPTM4AQ15012 233 aa6.22□□□□□ -1.41
TMEM39A-204ENST00000468545 PLA2G2CQ5R387 149 aa6.22□□□□□ -1.41
TMEM39A-204ENST00000468545 CDK11AQ9UQ88 783 aaPredicted RBP6.22□□□□□ -1.41
TMEM39A-204ENST00000468545 PCF11O94913 1555 aaKnown RBP6.22□□□□□ -1.41
TMEM39A-204ENST00000468545 ARHGEF11O15085 1522 aa6.21□□□□□ -1.42
TMEM39A-204ENST00000468545 ZBTB24O43167 697 aaPredicted RBP6.21□□□□□ -1.42
TMEM39A-204ENST00000468545 RPIAP49247 311 aa6.21□□□□□ -1.42
TMEM39A-204ENST00000468545 FYCO1Q9BQS8 1478 aa6.21□□□□□ -1.42
TMEM39A-204ENST00000468545 CDK13Q14004 1512 aaKnown RBP6.2□□□□□ -1.42
TMEM39A-204ENST00000468545 MTUS2Q5JR59 1369 aa6.2□□□□□ -1.42
TMEM39A-204ENST00000468545 TRIM32Q13049 653 aa6.2□□□□□ -1.42
TMEM39A-204ENST00000468545 IRF5Q13568 498 aa6.2□□□□□ -1.42
TMEM39A-204ENST00000468545 FNBP4Q8N3X1 1017 aaPredicted RBP6.2□□□□□ -1.42
TMEM39A-204ENST00000468545 GPSM3Q9Y4H4 160 aa6.2□□□□□ -1.42
TMEM39A-204ENST00000468545 RAPGEF6Q8TEU7 1601 aa6.2□□□□□ -1.42
TMEM39A-204ENST00000468545 RIMBP3CA6NJZ7 1639 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 RIMBP3BA6NNM3 1639 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 HECW1Q76N89 1606 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 RIMBP3Q9UFD9 1639 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 TRAK2O60296 914 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 SLC19A1P41440 591 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 WASHC4Q2M389 1173 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 PDXDC2PQ6P474 469 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 ZNF511Q8NB15 262 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 PCGF6Q9BYE7 350 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 PDZRN3Q9UPQ7 1066 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 ATP10BO94823 1461 aa6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 NUP153P49790 1475 aaKnown RBP6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 EPRSP07814 1512 aaKnown RBP6.19□□□□□ -1.42
TMEM39A-204ENST00000468545 ABCA8O94911 1581 aa6.18□□□□□ -1.42
TMEM39A-204ENST00000468545 ZBBXA8MT70 800 aa6.18□□□□□ -1.42
TMEM39A-204ENST00000468545 NRG2O14511 850 aaPredicted RBP6.18□□□□□ -1.42
TMEM39A-204ENST00000468545 PTK2Q05397 1052 aa6.18□□□□□ -1.42
TMEM39A-204ENST00000468545 TRIM26Q12899 539 aaPredicted RBP6.18□□□□□ -1.42
TMEM39A-204ENST00000468545 LINC01559Q495D7 138 aa6.18□□□□□ -1.42
TMEM39A-204ENST00000468545 LIAT1Q6ZQX7 453 aa6.18□□□□□ -1.42
TMEM39A-204ENST00000468545 SH3BP5LQ7L8J4 393 aa6.18□□□□□ -1.42
TMEM39A-204ENST00000468545 BAP1Q92560 729 aa6.18□□□□□ -1.42
TMEM39A-204ENST00000468545 EMID1Q96A84 441 aaPredicted RBP6.18□□□□□ -1.42
TMEM39A-204ENST00000468545 TIAM1Q13009 1591 aa6.18□□□□□ -1.42
TMEM39A-204ENST00000468545 CCDC18Q5T9S5 1454 aa6.17□□□□□ -1.42
TMEM39A-204ENST00000468545 LRRC9Q6ZRR7 1453 aa6.17□□□□□ -1.42
TMEM39A-204ENST00000468545 ABCC2Q92887 1545 aa6.17□□□□□ -1.42
TMEM39A-204ENST00000468545 CD2BP2O95400 341 aaKnown RBP6.17□□□□□ -1.42
TMEM39A-204ENST00000468545 ITGAEP38570 1179 aa6.17□□□□□ -1.42
TMEM39A-204ENST00000468545 WNT7BP56706 349 aa6.17□□□□□ -1.42
TMEM39A-204ENST00000468545 NR1H3Q13133 447 aa6.17□□□□□ -1.42
TMEM39A-204ENST00000468545 BPHLQ86WA6 291 aaPredicted RBP6.17□□□□□ -1.42
TMEM39A-204ENST00000468545 ARHGAP9Q9BRR9 750 aa6.17□□□□□ -1.42
TMEM39A-204ENST00000468545 ZNF330Q9Y3S2 320 aaPredicted RBP6.17□□□□□ -1.42
TMEM39A-204ENST00000468545 LCE2BO14633 110 aa6.16□□□□□ -1.42
TMEM39A-204ENST00000468545 FBXO45P0C2W1 286 aa6.16□□□□□ -1.42
TMEM39A-204ENST00000468545 SH3BP2P78314 561 aa6.16□□□□□ -1.42
TMEM39A-204ENST00000468545 FAM50AQ14320 339 aaKnown RBP6.16□□□□□ -1.42
TMEM39A-204ENST00000468545 SPRYD7Q5W111 196 aa6.16□□□□□ -1.42
TMEM39A-204ENST00000468545 TRAF7Q6Q0C0 670 aa6.16□□□□□ -1.42
TMEM39A-204ENST00000468545 SH3RF1Q7Z6J0 888 aa6.16□□□□□ -1.42
TMEM39A-204ENST00000468545 ZNF777Q9ULD5 760 aaPredicted RBP6.16□□□□□ -1.42
TMEM39A-204ENST00000468545 LRRIQ1Q96JM4 1722 aa6.16□□□□□ -1.42
TMEM39A-204ENST00000468545 UHRF1BP1LA0JNW5 1464 aa6.15□□□□□ -1.42
TMEM39A-204ENST00000468545 VAC14Q08AM6 782 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 168.5 ms