RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SLC10A4Q96EP9 437 aa9.78□□□□□ -0.84
CCDC88A-210ENST00000468534 USP17L8P0C7I0 530 aa9.77□□□□□ -0.85
CCDC88A-210ENST00000468534 MEIOBQ8N635 442 aa9.77□□□□□ -0.85
CCDC88A-210ENST00000468534 HMX1Q9NP08 348 aaPredicted RBP9.77□□□□□ -0.85
CCDC88A-210ENST00000468534 MAN1A2O60476 641 aa9.76□□□□□ -0.85
CCDC88A-210ENST00000468534 EMILIN1Q9Y6C2 1016 aa9.76□□□□□ -0.85
CCDC88A-210ENST00000468534 RFC5P40937 340 aa9.75□□□□□ -0.85
CCDC88A-210ENST00000468534 INSM1Q01101 510 aaPredicted RBP9.75□□□□□ -0.85
CCDC88A-210ENST00000468534 H3BM21 787 aa9.74□□□□□ -0.85
CCDC88A-210ENST00000468534 GMPRP36959 345 aa9.74□□□□□ -0.85
CCDC88A-210ENST00000468534 PTK2Q05397 1052 aa9.74□□□□□ -0.85
CCDC88A-210ENST00000468534 PPP1R26Q5T8A7 1209 aaPredicted RBP9.74□□□□□ -0.85
CCDC88A-210ENST00000468534 IL27Q8NEV9 243 aa9.74□□□□□ -0.85
CCDC88A-210ENST00000468534 IRF7Q92985 503 aa9.74□□□□□ -0.85
CCDC88A-210ENST00000468534 KCTD15Q96SI1 283 aaPredicted RBP9.74□□□□□ -0.85
CCDC88A-210ENST00000468534 ZC3H4Q9UPT8 1303 aaKnown RBP9.74□□□□□ -0.85
CCDC88A-210ENST00000468534 PCMTD1Q96MG8 357 aaPredicted RBP9.73□□□□□ -0.85
CCDC88A-210ENST00000468534 OCSTAMPQ9BR26 566 aa9.73□□□□□ -0.85
CCDC88A-210ENST00000468534 ERBB4Q15303 1308 aa9.73□□□□□ -0.85
CCDC88A-210ENST00000468534 RAB15P59190 212 aa9.72□□□□□ -0.85
CCDC88A-210ENST00000468534 CBLBQ13191 982 aa9.72□□□□□ -0.85
CCDC88A-210ENST00000468534 NPAS3Q8IXF0 933 aa9.72□□□□□ -0.85
CCDC88A-210ENST00000468534 ADAM32Q8TC27 787 aa9.72□□□□□ -0.85
CCDC88A-210ENST00000468534 PGPEP1Q9NXJ5 209 aa9.72□□□□□ -0.85
CCDC88A-210ENST00000468534 PNMA1Q8ND90 353 aa9.71□□□□□ -0.86
CCDC88A-210ENST00000468534 TSEN34Q9BSV6 310 aaKnown RBP9.71□□□□□ -0.86
CCDC88A-210ENST00000468534 CDV3Q9UKY7 258 aaKnown RBP9.71□□□□□ -0.86
CCDC88A-210ENST00000468534 SOS2Q07890 1332 aaPredicted RBP9.69□□□□□ -0.86
CCDC88A-210ENST00000468534 INTS6LQ5JSJ4 861 aaKnown RBP9.69□□□□□ -0.86
CCDC88A-210ENST00000468534 STK17AQ9UEE5 414 aa9.69□□□□□ -0.86
CCDC88A-210ENST00000468534 DNMT3LQ9UJW3 386 aa9.69□□□□□ -0.86
CCDC88A-210ENST00000468534 GPSM3Q9Y4H4 160 aa9.68□□□□□ -0.86
CCDC88A-210ENST00000468534 FIGNL2A6NMB9 653 aa9.67□□□□□ -0.86
CCDC88A-210ENST00000468534 DHX9Q08211 1270 aaKnown RBP9.67□□□□□ -0.86
CCDC88A-210ENST00000468534 DZIP3Q86Y13 1208 aaKnown RBP9.67□□□□□ -0.86
CCDC88A-210ENST00000468534 AGBL1Q96MI9 1066 aa9.67□□□□□ -0.86
CCDC88A-210ENST00000468534 TTLL8A6PVC2 850 aa9.66□□□□□ -0.86
CCDC88A-210ENST00000468534 NBPF20Q3BBV1 942 aa9.66□□□□□ -0.86
CCDC88A-210ENST00000468534 GOPCQ9HD26 462 aa9.66□□□□□ -0.86
CCDC88A-210ENST00000468534 TMPRSS4Q9NRS4 437 aa9.66□□□□□ -0.86
CCDC88A-210ENST00000468534 BRPF1P55201 1214 aaPredicted RBP9.65□□□□□ -0.86
CCDC88A-210ENST00000468534 RELBQ01201 579 aa9.65□□□□□ -0.86
CCDC88A-210ENST00000468534 Q6ZVU0 165 aa9.65□□□□□ -0.86
CCDC88A-210ENST00000468534 TRIM34Q9BYJ4 488 aa9.65□□□□□ -0.86
CCDC88A-210ENST00000468534 PPFIA3O75145 1194 aa9.64□□□□□ -0.87
CCDC88A-210ENST00000468534 TMEM259Q4ZIN3 620 aa9.64□□□□□ -0.87
CCDC88A-210ENST00000468534 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.63□□□□□ -0.87
CCDC88A-210ENST00000468534 ZNF784Q8NCA9 323 aaPredicted RBP9.62□□□□□ -0.87
CCDC88A-210ENST00000468534 ERVH48-1M5A8F1 160 aa9.61□□□□□ -0.87
CCDC88A-210ENST00000468534 SPINT1O43278 529 aa9.61□□□□□ -0.87
CCDC88A-210ENST00000468534 ZSCAN1Q8NBB4 408 aa9.61□□□□□ -0.87
CCDC88A-210ENST00000468534 INSM2Q96T92 566 aaPredicted RBP9.61□□□□□ -0.87
CCDC88A-210ENST00000468534 ZNF395Q9H8N7 513 aaPredicted RBP9.61□□□□□ -0.87
CCDC88A-210ENST00000468534 PTSQ03393 145 aa9.6□□□□□ -0.87
CCDC88A-210ENST00000468534 POLMQ9NP87 494 aaPredicted RBP9.6□□□□□ -0.87
CCDC88A-210ENST00000468534 PCDHB9Q9Y5E1 797 aa9.6□□□□□ -0.87
CCDC88A-210ENST00000468534 CTSOP43234 321 aaPredicted RBP9.59□□□□□ -0.87
CCDC88A-210ENST00000468534 TPRNQ4KMQ1 711 aa9.59□□□□□ -0.87
CCDC88A-210ENST00000468534 GJD4Q96KN9 370 aaPredicted RBP9.59□□□□□ -0.87
CCDC88A-210ENST00000468534 ZBBXA8MT70 800 aa9.58□□□□□ -0.88
CCDC88A-210ENST00000468534 VSIG8P0DPA2 414 aa9.58□□□□□ -0.88
CCDC88A-210ENST00000468534 LORP23490 312 aaPredicted RBP9.58□□□□□ -0.88
CCDC88A-210ENST00000468534 CYLDQ9NQC7 956 aa9.58□□□□□ -0.88
CCDC88A-210ENST00000468534 FAM181BA6NEQ2 426 aa9.57□□□□□ -0.88
CCDC88A-210ENST00000468534 ESPNB1AK53 854 aa9.56□□□□□ -0.88
CCDC88A-210ENST00000468534 ADH1AP07327 375 aa9.56□□□□□ -0.88
CCDC88A-210ENST00000468534 FBXO45P0C2W1 286 aa9.56□□□□□ -0.88
CCDC88A-210ENST00000468534 ADD1P35611 737 aaKnown RBP9.56□□□□□ -0.88
CCDC88A-210ENST00000468534 LILRA1O75019 489 aa9.55□□□□□ -0.88
CCDC88A-210ENST00000468534 GIGYF1O75420 1035 aaPredicted RBP9.55□□□□□ -0.88
CCDC88A-210ENST00000468534 CCDC155Q8N6L0 562 aa9.55□□□□□ -0.88
CCDC88A-210ENST00000468534 RNF217Q8TC41 542 aa9.54□□□□□ -0.88
CCDC88A-210ENST00000468534 PTGIRP43119 386 aa9.52□□□□□ -0.89
CCDC88A-210ENST00000468534 SEPT12Q8IYM1 358 aa9.52□□□□□ -0.89
CCDC88A-210ENST00000468534 GPR161Q8N6U8 529 aaKnown RBP9.52□□□□□ -0.89
CCDC88A-210ENST00000468534 CDC14CA4D256 554 aa9.51□□□□□ -0.89
CCDC88A-210ENST00000468534 KDF1Q8NAX2 398 aaPredicted RBP9.51□□□□□ -0.89
CCDC88A-210ENST00000468534 MTMR14Q8NCE2 650 aa9.51□□□□□ -0.89
CCDC88A-210ENST00000468534 SLC35F4A4IF30 521 aa9.5□□□□□ -0.89
CCDC88A-210ENST00000468534 FOXD4L5Q5VV16 416 aaPredicted RBP9.5□□□□□ -0.89
CCDC88A-210ENST00000468534 CNTNAP3BQ96NU0 1288 aa9.5□□□□□ -0.89
CCDC88A-210ENST00000468534 CNTNAP3Q9BZ76 1288 aa9.5□□□□□ -0.89
CCDC88A-210ENST00000468534 SNRKQ9NRH2 765 aa9.5□□□□□ -0.89
CCDC88A-210ENST00000468534 NR1H3Q13133 447 aa9.49□□□□□ -0.89
CCDC88A-210ENST00000468534 BANK1Q8NDB2 785 aa9.49□□□□□ -0.89
CCDC88A-210ENST00000468534 NDUFB9Q9Y6M9 179 aa9.49□□□□□ -0.89
CCDC88A-210ENST00000468534 ITGA6P23229 1130 aa9.48□□□□□ -0.89
CCDC88A-210ENST00000468534 KRT76Q01546 638 aa9.48□□□□□ -0.89
CCDC88A-210ENST00000468534 COL25A1Q9BXS0 654 aaPredicted RBP9.48□□□□□ -0.89
CCDC88A-210ENST00000468534 ATP5J2-PTCD1G3V325 749 aa9.47□□□□□ -0.89
CCDC88A-210ENST00000468534 MEN1O00255 615 aa9.47□□□□□ -0.89
CCDC88A-210ENST00000468534 VWA5B2Q8N398 1253 aa9.47□□□□□ -0.89
CCDC88A-210ENST00000468534 SENP3-EIF4A1A0A087X0R7 540 aa9.46□□□□□ -0.9
CCDC88A-210ENST00000468534 GPR37L1O60883 481 aa9.46□□□□□ -0.9
CCDC88A-210ENST00000468534 LYSMD3Q7Z3D4 306 aa9.46□□□□□ -0.9
CCDC88A-210ENST00000468534 PRICKLE2Q7Z3G6 844 aa9.46□□□□□ -0.9
CCDC88A-210ENST00000468534 TRIM52Q96A61 297 aa9.46□□□□□ -0.9
CCDC88A-210ENST00000468534 ZNF330Q9Y3S2 320 aaPredicted RBP9.46□□□□□ -0.9
CCDC88A-210ENST00000468534 PCDHB11Q9Y5F2 797 aa9.46□□□□□ -0.9
CCDC88A-210ENST00000468534 RHOQP17081 205 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms