RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 MST1RQ04912 1400 aa8.91□□□□□ -0.98
HMGB1-207ENST00000468384 PRDM10Q9NQV6 1147 aa8.91□□□□□ -0.98
HMGB1-207ENST00000468384 SOS2Q07890 1332 aaPredicted RBP8.9□□□□□ -0.98
HMGB1-207ENST00000468384 CCDC85CA6NKD9 419 aa8.9□□□□□ -0.98
HMGB1-207ENST00000468384 POTECB2RU33 542 aa8.9□□□□□ -0.98
HMGB1-207ENST00000468384 TREML4Q6UXN2 200 aa8.9□□□□□ -0.98
HMGB1-207ENST00000468384 ERVK-7P63135 1459 aa8.89□□□□□ -0.99
HMGB1-207ENST00000468384 FAM98CQ17RN3 349 aaKnown RBP8.89□□□□□ -0.99
HMGB1-207ENST00000468384 COL22A1Q8NFW1 1626 aaPredicted RBP8.89□□□□□ -0.99
HMGB1-207ENST00000468384 EFCAB6Q5THR3 1501 aa8.89□□□□□ -0.99
HMGB1-207ENST00000468384 DCCP43146 1447 aa8.88□□□□□ -0.99
HMGB1-207ENST00000468384 KIF3BO15066 747 aa8.88□□□□□ -0.99
HMGB1-207ENST00000468384 YBX3P16989 372 aaKnown RBP eCLIP8.88□□□□□ -0.996e-17■■□□□ 12.5
HMGB1-207ENST00000468384 BCANQ96GW7 911 aa8.88□□□□□ -0.99
HMGB1-207ENST00000468384 ANO8Q9HCE9 1232 aaPredicted RBP8.88□□□□□ -0.99
HMGB1-207ENST00000468384 MARF1Q9Y4F3 1742 aaKnown RBP8.88□□□□□ -0.99
HMGB1-207ENST00000468384 CDC42BPBQ9Y5S2 1711 aa8.88□□□□□ -0.99
HMGB1-207ENST00000468384 PRPF38BQ5VTL8 546 aaKnown RBP8.87□□□□□ -0.99
HMGB1-207ENST00000468384 STK17AQ9UEE5 414 aa8.87□□□□□ -0.99
HMGB1-207ENST00000468384 TMEM131LA2VDJ0 1609 aa8.87□□□□□ -0.99
HMGB1-207ENST00000468384 INO80Q9ULG1 1556 aaPredicted RBP8.86□□□□□ -0.99
HMGB1-207ENST00000468384 ITGBL1O95965 494 aaPredicted RBP8.86□□□□□ -0.99
HMGB1-207ENST00000468384 FAM196AQ6ZSG2 479 aa8.86□□□□□ -0.99
HMGB1-207ENST00000468384 MTFR1LQ9H019 292 aa8.86□□□□□ -0.99
HMGB1-207ENST00000468384 CHD2O14647 1828 aaKnown RBP8.86□□□□□ -0.99
HMGB1-207ENST00000468384 ABCC5O15440 1437 aa8.86□□□□□ -0.99
HMGB1-207ENST00000468384 FOXN1O15353 648 aa8.84□□□□□ -0.99
HMGB1-207ENST00000468384 PDAP1Q13442 181 aaKnown RBP8.83□□□□□ -1
HMGB1-207ENST00000468384 DHX29Q7Z478 1369 aaKnown RBP8.83□□□□□ -1
HMGB1-207ENST00000468384 SYCP2Q9BX26 1530 aa8.82□□□□□ -1
HMGB1-207ENST00000468384 RBM46Q8TBY0 533 aaKnown RBP8.82□□□□□ -1
HMGB1-207ENST00000468384 CROCC2H7BZ55 1655 aa8.81□□□□□ -1
HMGB1-207ENST00000468384 KLHL34Q8N239 644 aa8.81□□□□□ -1
HMGB1-207ENST00000468384 CDK11AQ9UQ88 783 aaPredicted RBP8.81□□□□□ -1
HMGB1-207ENST00000468384 PCDHGA4Q9Y5G9 962 aa8.81□□□□□ -1
HMGB1-207ENST00000468384 DHX57Q6P158 1386 aaKnown RBP8.81□□□□□ -1
HMGB1-207ENST00000468384 LAMC1P11047 1609 aa8.8□□□□□ -1
HMGB1-207ENST00000468384 PREX2Q70Z35 1606 aa8.8□□□□□ -1
HMGB1-207ENST00000468384 FSTL1Q12841 308 aa8.8□□□□□ -1
HMGB1-207ENST00000468384 ZNF777Q9ULD5 760 aaPredicted RBP8.8□□□□□ -1
HMGB1-207ENST00000468384 VPS9D1Q9Y2B5 631 aa8.8□□□□□ -1
HMGB1-207ENST00000468384 ADGRB3O60242 1522 aa8.8□□□□□ -1
HMGB1-207ENST00000468384 CHGAP10645 457 aaKnown RBP8.79□□□□□ -1
HMGB1-207ENST00000468384 NLGN2Q8NFZ4 835 aa8.79□□□□□ -1
HMGB1-207ENST00000468384 WNT2BQ93097 391 aa8.79□□□□□ -1
HMGB1-207ENST00000468384 TROQ12816 1431 aaPredicted RBP8.79□□□□□ -1
HMGB1-207ENST00000468384 RPRD2Q5VT52 1461 aaKnown RBP8.78□□□□□ -1
HMGB1-207ENST00000468384 CTCFP49711 727 aaPredicted RBP8.78□□□□□ -1
HMGB1-207ENST00000468384 TBX22Q9Y458 520 aa8.78□□□□□ -1
HMGB1-207ENST00000468384 NEXMIFQ5QGS0 1516 aa8.77□□□□□ -1.01
HMGB1-207ENST00000468384 CFAP44Q96MT7 982 aa8.77□□□□□ -1.01
HMGB1-207ENST00000468384 EFCAB3Q8N7B9 438 aa8.76□□□□□ -1.01
HMGB1-207ENST00000468384 BCL11BQ9C0K0 894 aaPredicted RBP8.76□□□□□ -1.01
HMGB1-207ENST00000468384 CLIP1P30622 1438 aa8.76□□□□□ -1.01
HMGB1-207ENST00000468384 ADGRL3Q9HAR2 1447 aa8.76□□□□□ -1.01
HMGB1-207ENST00000468384 SLC17A8Q8NDX2 589 aa8.75□□□□□ -1.01
HMGB1-207ENST00000468384 PIK3C2BO00750 1634 aa8.75□□□□□ -1.01
HMGB1-207ENST00000468384 USP32Q8NFA0 1604 aa8.75□□□□□ -1.01
HMGB1-207ENST00000468384 LBX1P52954 281 aa8.74□□□□□ -1.01
HMGB1-207ENST00000468384 ORAI2Q96SN7 254 aa8.74□□□□□ -1.01
HMGB1-207ENST00000468384 KCNK17Q96T54 332 aa8.74□□□□□ -1.01
HMGB1-207ENST00000468384 NMRK2Q9NPI5 230 aa8.74□□□□□ -1.01
HMGB1-207ENST00000468384 C1orf167Q5SNV9 1468 aa8.74□□□□□ -1.01
HMGB1-207ENST00000468384 PLEKHG1Q9ULL1 1385 aa8.73□□□□□ -1.01
HMGB1-207ENST00000468384 NOS1P29475 1434 aa8.73□□□□□ -1.01
HMGB1-207ENST00000468384 C16orf71Q8IYS4 520 aaPredicted RBP8.73□□□□□ -1.01
HMGB1-207ENST00000468384 GCC1Q96CN9 775 aa8.73□□□□□ -1.01
HMGB1-207ENST00000468384 PRKD2Q9BZL6 878 aa8.73□□□□□ -1.01
HMGB1-207ENST00000468384 KIAA1107Q9UPP5 1409 aa8.72□□□□□ -1.01
HMGB1-207ENST00000468384 HABP4Q5JVS0 413 aaKnown RBP8.72□□□□□ -1.01
HMGB1-207ENST00000468384 STK32BQ9NY57 414 aa8.72□□□□□ -1.01
HMGB1-207ENST00000468384 AMOTL2Q9Y2J4 779 aa8.72□□□□□ -1.01
HMGB1-207ENST00000468384 SLC15A2Q16348 729 aa8.71□□□□□ -1.02
HMGB1-207ENST00000468384 AIDAQ96BJ3 306 aa8.71□□□□□ -1.02
HMGB1-207ENST00000468384 PIK3R4Q99570 1358 aa8.71□□□□□ -1.02
HMGB1-207ENST00000468384 ARHGEF28Q8N1W1 1705 aaKnown RBP8.71□□□□□ -1.02
HMGB1-207ENST00000468384 NWD2Q9ULI1 1742 aa8.71□□□□□ -1.02
HMGB1-207ENST00000468384 TRPM2O94759 1503 aa8.7□□□□□ -1.02
HMGB1-207ENST00000468384 CFAP65Q6ZU64 1925 aaKnown RBP8.7□□□□□ -1.02
HMGB1-207ENST00000468384 THSD7AQ9UPZ6 1657 aa8.7□□□□□ -1.02
HMGB1-207ENST00000468384 PLSCR1O15162 318 aa8.7□□□□□ -1.02
HMGB1-207ENST00000468384 TULP4Q9NRJ4 1543 aa8.7□□□□□ -1.02
HMGB1-207ENST00000468384 GOLGA8CPA6NN73 597 aa8.69□□□□□ -1.02
HMGB1-207ENST00000468384 MS4A4AQ96JQ5 239 aa8.69□□□□□ -1.02
HMGB1-207ENST00000468384 ATP1B4Q9UN42 357 aaPredicted RBP8.69□□□□□ -1.02
HMGB1-207ENST00000468384 PLCH1Q4KWH8 1693 aa8.69□□□□□ -1.02
HMGB1-207ENST00000468384 BHMG1C9JSJ3 638 aaPredicted RBP8.68□□□□□ -1.02
HMGB1-207ENST00000468384 CHRM1P11229 460 aaPredicted RBP8.68□□□□□ -1.02
HMGB1-207ENST00000468384 RANGAP1P46060 587 aaPredicted RBP8.68□□□□□ -1.02
HMGB1-207ENST00000468384 IDI1Q13907 227 aa8.68□□□□□ -1.02
HMGB1-207ENST00000468384 PDZRN3Q9UPQ7 1066 aa8.68□□□□□ -1.02
HMGB1-207ENST00000468384 SPATA31A5Q5VU36 1347 aa8.68□□□□□ -1.02
HMGB1-207ENST00000468384 SPATA31A7Q8IWB4 1347 aa8.68□□□□□ -1.02
HMGB1-207ENST00000468384 XPCQ01831 940 aaPredicted RBP8.67□□□□□ -1.02
HMGB1-207ENST00000468384 NPHP3Q7Z494 1330 aa8.67□□□□□ -1.02
HMGB1-207ENST00000468384 ADGRL2O95490 1459 aa8.66□□□□□ -1.02
HMGB1-207ENST00000468384 PXDNQ92626 1479 aa8.66□□□□□ -1.02
HMGB1-207ENST00000468384 PRAG1Q86YV5 1406 aa8.66□□□□□ -1.02
HMGB1-207ENST00000468384 PTPRUQ92729 1446 aa8.66□□□□□ -1.02
HMGB1-207ENST00000468384 POLD1P28340 1107 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms