RNA–Protein interactions for RNA: ENST00000467731.1

SCAF4-204, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 1 (best)

Gene SCAF4, Length 2,976 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-204ENST00000467731 COL3A1P02461 1466 aaPredicted RBP9.2□□□□□ -0.94
SCAF4-204ENST00000467731 HSP90AB2PQ58FF8 381 aa9.2□□□□□ -0.94
SCAF4-204ENST00000467731 UBE2Q2Q8WVN8 375 aa9.2□□□□□ -0.94
SCAF4-204ENST00000467731 CFAP53Q96M91 514 aa9.2□□□□□ -0.94
SCAF4-204ENST00000467731 CPDO75976 1380 aa9.2□□□□□ -0.94
SCAF4-204ENST00000467731 KIF24Q5T7B8 1368 aa9.2□□□□□ -0.94
SCAF4-204ENST00000467731 COL18A1P39060 1754 aa9.2□□□□□ -0.94
SCAF4-204ENST00000467731 HOXC9P31274 260 aa9.19□□□□□ -0.94
SCAF4-204ENST00000467731 RTL1A6NKG5 1358 aa9.19□□□□□ -0.94
SCAF4-204ENST00000467731 CHRNA2Q15822 529 aa9.19□□□□□ -0.94
SCAF4-204ENST00000467731 INSRP06213 1382 aa9.19□□□□□ -0.94
SCAF4-204ENST00000467731 IP6K1Q92551 441 aa9.18□□□□□ -0.94
SCAF4-204ENST00000467731 PRDM11Q9NQV5 511 aa9.18□□□□□ -0.94
SCAF4-204ENST00000467731 FAM9BQ8IZU0 186 aa9.18□□□□□ -0.94
SCAF4-204ENST00000467731 PNISRQ8TF01 805 aaKnown RBP9.18□□□□□ -0.94
SCAF4-204ENST00000467731 AXIN2Q9Y2T1 843 aa9.18□□□□□ -0.94
SCAF4-204ENST00000467731 NUTM2BA6NNL0 878 aaPredicted RBP9.18□□□□□ -0.94
SCAF4-204ENST00000467731 NUTM2EB1AL46 878 aaPredicted RBP9.18□□□□□ -0.94
SCAF4-204ENST00000467731 DIAPH1O60610 1272 aaKnown RBP9.18□□□□□ -0.94
SCAF4-204ENST00000467731 NUTM2AQ8IVF1 878 aaPredicted RBP9.18□□□□□ -0.94
SCAF4-204ENST00000467731 FBXO41Q8TF61 875 aa9.18□□□□□ -0.94
SCAF4-204ENST00000467731 RGPD2P0DJD1 1756 aa9.17□□□□□ -0.94
SCAF4-204ENST00000467731 LMO7Q8WWI1 1683 aa9.17□□□□□ -0.94
SCAF4-204ENST00000467731 ADAMTS2O95450 1211 aa9.17□□□□□ -0.94
SCAF4-204ENST00000467731 EIF4A2Q14240 407 aaKnown RBP9.17□□□□□ -0.94
SCAF4-204ENST00000467731 ABCC6O95255 1503 aa9.17□□□□□ -0.94
SCAF4-204ENST00000467731 BLMP54132 1417 aaPredicted RBP9.16□□□□□ -0.94
SCAF4-204ENST00000467731 COL14A1Q05707 1796 aaKnown RBP9.16□□□□□ -0.94
SCAF4-204ENST00000467731 SPATA31A6Q5VVP1 1343 aa9.16□□□□□ -0.94
SCAF4-204ENST00000467731 FAM83GA6ND36 823 aa9.16□□□□□ -0.94
SCAF4-204ENST00000467731 U2SURPO15042 1029 aaKnown RBP9.16□□□□□ -0.94
SCAF4-204ENST00000467731 IL13P35225 146 aa9.16□□□□□ -0.94
SCAF4-204ENST00000467731 WDR43Q15061 677 aaKnown RBP eCLIP9.16□□□□□ -0.94
SCAF4-204ENST00000467731 LTV1Q96GA3 475 aaPredicted RBP9.16□□□□□ -0.94
SCAF4-204ENST00000467731 RGPD1P0DJD0 1748 aa9.16□□□□□ -0.94
SCAF4-204ENST00000467731 PLCH1Q4KWH8 1693 aa9.16□□□□□ -0.94
SCAF4-204ENST00000467731 CAMTA1Q9Y6Y1 1673 aa9.16□□□□□ -0.94
SCAF4-204ENST00000467731 LRP6O75581 1613 aa9.16□□□□□ -0.94
SCAF4-204ENST00000467731 ERBB3P21860 1342 aa9.15□□□□□ -0.94
SCAF4-204ENST00000467731 ADAMTS8Q9UP79 889 aa9.15□□□□□ -0.94
SCAF4-204ENST00000467731 NUDCQ9Y266 331 aa9.15□□□□□ -0.94
SCAF4-204ENST00000467731 ANKRD24Q8TF21 1146 aa9.15□□□□□ -0.95
SCAF4-204ENST00000467731 U2AF1L5P0DN76 240 aaPredicted RBP9.14□□□□□ -0.95
SCAF4-204ENST00000467731 U2AF1Q01081 240 aaKnown RBP eCLIP9.14□□□□□ -0.959e-23■■■■□ 19.4
SCAF4-204ENST00000467731 COL5A2P05997 1499 aaPredicted RBP9.14□□□□□ -0.95
SCAF4-204ENST00000467731 BTG4Q9NY30 223 aa9.14□□□□□ -0.95
SCAF4-204ENST00000467731 FAM208AQ9UK61 1670 aaKnown RBP9.13□□□□□ -0.95
SCAF4-204ENST00000467731 HMOX1P09601 288 aa9.13□□□□□ -0.95
SCAF4-204ENST00000467731 EYA1Q99502 592 aa9.13□□□□□ -0.95
SCAF4-204ENST00000467731 NWD2Q9ULI1 1742 aa9.13□□□□□ -0.95
SCAF4-204ENST00000467731 C8orf37Q96NL8 207 aa9.12□□□□□ -0.95
SCAF4-204ENST00000467731 IGSF1Q8N6C5 1336 aa9.12□□□□□ -0.95
SCAF4-204ENST00000467731 NBPF6Q5VWK0 638 aa9.12□□□□□ -0.95
SCAF4-204ENST00000467731 NBPF4Q96M43 638 aa9.12□□□□□ -0.95
SCAF4-204ENST00000467731 STRN4Q9NRL3 753 aa9.12□□□□□ -0.95
SCAF4-204ENST00000467731 NRAPQ86VF7 1730 aa9.12□□□□□ -0.95
SCAF4-204ENST00000467731 CSB-PGBD3P0DP91 1061 aa9.12□□□□□ -0.95
SCAF4-204ENST00000467731 SULT6B1Q6IMI4 303 aa9.12□□□□□ -0.95
SCAF4-204ENST00000467731 AEBP1Q8IUX7 1158 aa9.12□□□□□ -0.95
SCAF4-204ENST00000467731 USHBP1Q8N6Y0 703 aa9.12□□□□□ -0.95
SCAF4-204ENST00000467731 SLIT2O94813 1529 aa9.11□□□□□ -0.95
SCAF4-204ENST00000467731 CCDC146Q8IYE0 955 aa9.11□□□□□ -0.95
SCAF4-204ENST00000467731 WDR17Q8IZU2 1322 aa9.11□□□□□ -0.95
SCAF4-204ENST00000467731 KDRP35968 1356 aa9.1□□□□□ -0.95
SCAF4-204ENST00000467731 EVA1CP58658 441 aa9.1□□□□□ -0.95
SCAF4-204ENST00000467731 MEX3CQ5U5Q3 659 aaKnown RBP9.1□□□□□ -0.95
SCAF4-204ENST00000467731 NGLY1Q96IV0 654 aa9.1□□□□□ -0.95
SCAF4-204ENST00000467731 YTHDC1Q96MU7 727 aaKnown RBP9.1□□□□□ -0.95
SCAF4-204ENST00000467731 RSPH6AQ9H0K4 717 aa9.1□□□□□ -0.95
SCAF4-204ENST00000467731 NLRP2Q9NX02 1062 aa9.1□□□□□ -0.95
SCAF4-204ENST00000467731 SENP3-EIF4A1A0A087X0R7 540 aa9.1□□□□□ -0.95
SCAF4-204ENST00000467731 FCHSD2O94868 740 aa9.1□□□□□ -0.95
SCAF4-204ENST00000467731 LARP1Q6PKG0 1096 aaKnown RBP9.1□□□□□ -0.95
SCAF4-204ENST00000467731 TOM1L2Q6ZVM7 507 aa9.1□□□□□ -0.95
SCAF4-204ENST00000467731 NCAPD2Q15021 1401 aa9.1□□□□□ -0.95
SCAF4-204ENST00000467731 PRKAR2BP31323 418 aa9.09□□□□□ -0.95
SCAF4-204ENST00000467731 ANO8Q9HCE9 1232 aaPredicted RBP9.09□□□□□ -0.95
SCAF4-204ENST00000467731 PLEKHF1Q96S99 279 aa9.09□□□□□ -0.95
SCAF4-204ENST00000467731 CRB1P82279 1406 aa9.09□□□□□ -0.95
SCAF4-204ENST00000467731 FNBP4Q8N3X1 1017 aaPredicted RBP9.09□□□□□ -0.95
SCAF4-204ENST00000467731 BCL9LQ86UU0 1499 aa9.08□□□□□ -0.96
SCAF4-204ENST00000467731 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.08□□□□□ -0.96
SCAF4-204ENST00000467731 RUNDC1Q96C34 613 aa9.08□□□□□ -0.96
SCAF4-204ENST00000467731 USP35Q9P2H5 1018 aa9.08□□□□□ -0.96
SCAF4-204ENST00000467731 DLG5Q8TDM6 1919 aa9.08□□□□□ -0.96
SCAF4-204ENST00000467731 HNRNPUQ00839 825 aaKnown RBP eCLIP9.07□□□□□ -0.96
SCAF4-204ENST00000467731 UNC5CLQ8IV45 518 aa9.07□□□□□ -0.96
SCAF4-204ENST00000467731 PHACTR3Q96KR7 559 aa9.07□□□□□ -0.96
SCAF4-204ENST00000467731 CARD10Q9BWT7 1032 aa9.07□□□□□ -0.96
SCAF4-204ENST00000467731 PNNQ9H307 717 aaKnown RBP9.07□□□□□ -0.96
SCAF4-204ENST00000467731 MAPK8IP3Q9UPT6 1336 aa9.07□□□□□ -0.96
SCAF4-204ENST00000467731 APAF1O14727 1248 aa9.07□□□□□ -0.96
SCAF4-204ENST00000467731 USP21Q9UK80 565 aa9.07□□□□□ -0.96
SCAF4-204ENST00000467731 AFF2P51816 1311 aa9.06□□□□□ -0.96
SCAF4-204ENST00000467731 MEGF6O75095 1541 aa9.06□□□□□ -0.96
SCAF4-204ENST00000467731 WNK3Q9BYP7 1800 aa9.06□□□□□ -0.96
SCAF4-204ENST00000467731 NEFMP07197 916 aa9.06□□□□□ -0.96
SCAF4-204ENST00000467731 TCP11L2Q8N4U5 519 aa9.06□□□□□ -0.96
SCAF4-204ENST00000467731 SALL2Q9Y467 1007 aaPredicted RBP9.06□□□□□ -0.96
SCAF4-204ENST00000467731 PARP4Q9UKK3 1724 aaKnown RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms