RNA–Protein interactions for RNA: ENST00000465563.5

SMC4-205, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 747 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-205ENST00000465563 EMILIN1Q9Y6C2 1016 aa12.49□□□□□ -0.41
SMC4-205ENST00000465563 CDV3Q9UKY7 258 aaKnown RBP12.48□□□□□ -0.41
SMC4-205ENST00000465563 GPSM3Q9Y4H4 160 aa12.48□□□□□ -0.41
SMC4-205ENST00000465563 UPP2O95045 317 aa12.47□□□□□ -0.41
SMC4-205ENST00000465563 EPS8L1Q8TE68 723 aa12.47□□□□□ -0.41
SMC4-205ENST00000465563 HMX1Q9NP08 348 aaPredicted RBP12.47□□□□□ -0.41
SMC4-205ENST00000465563 WIPF1O43516 503 aa12.46□□□□□ -0.41
SMC4-205ENST00000465563 C6orf118Q5T5N4 469 aa12.46□□□□□ -0.41
SMC4-205ENST00000465563 NPAS3Q8IXF0 933 aa12.46□□□□□ -0.41
SMC4-205ENST00000465563 MEIOBQ8N635 442 aa12.46□□□□□ -0.41
SMC4-205ENST00000465563 TMEM259Q4ZIN3 620 aa12.45□□□□□ -0.42
SMC4-205ENST00000465563 KCTD15Q96SI1 283 aaPredicted RBP12.45□□□□□ -0.42
SMC4-205ENST00000465563 BMP2P12643 396 aa12.44□□□□□ -0.42
SMC4-205ENST00000465563 LCE2CQ5TA81 110 aa12.44□□□□□ -0.42
SMC4-205ENST00000465563 LINC00528Q8N1L1 170 aa12.44□□□□□ -0.42
SMC4-205ENST00000465563 OCSTAMPQ9BR26 566 aa12.44□□□□□ -0.42
SMC4-205ENST00000465563 BRPF1P55201 1214 aaPredicted RBP12.43□□□□□ -0.42
SMC4-205ENST00000465563 PPP1R26Q5T8A7 1209 aaPredicted RBP12.43□□□□□ -0.42
SMC4-205ENST00000465563 ADAM32Q8TC27 787 aa12.43□□□□□ -0.42
SMC4-205ENST00000465563 PGPEP1Q9NXJ5 209 aa12.43□□□□□ -0.42
SMC4-205ENST00000465563 SOBPA7XYQ1 873 aa12.41□□□□□ -0.42
SMC4-205ENST00000465563 TSEN34Q9BSV6 310 aaKnown RBP12.41□□□□□ -0.42
SMC4-205ENST00000465563 H3BM21 787 aa12.4□□□□□ -0.42
SMC4-205ENST00000465563 MAN1A2O60476 641 aa12.4□□□□□ -0.42
SMC4-205ENST00000465563 DHX9Q08211 1270 aaKnown RBP12.4□□□□□ -0.42
SMC4-205ENST00000465563 IRF7Q92985 503 aa12.4□□□□□ -0.42
SMC4-205ENST00000465563 VEGFBP49765 207 aa12.39□□□□□ -0.43
SMC4-205ENST00000465563 INSM1Q01101 510 aaPredicted RBP12.39□□□□□ -0.43
SMC4-205ENST00000465563 TRIM34Q9BYJ4 488 aa12.38□□□□□ -0.43
SMC4-205ENST00000465563 NBPF20Q3BBV1 942 aa12.37□□□□□ -0.43
SMC4-205ENST00000465563 INTS6LQ5JSJ4 861 aaKnown RBP12.37□□□□□ -0.43
SMC4-205ENST00000465563 CBLBQ13191 982 aa12.36□□□□□ -0.43
SMC4-205ENST00000465563 Q6ZVU0 165 aa12.36□□□□□ -0.43
SMC4-205ENST00000465563 DZIP3Q86Y13 1208 aaKnown RBP12.36□□□□□ -0.43
SMC4-205ENST00000465563 SOS2Q07890 1332 aaPredicted RBP12.36□□□□□ -0.43
SMC4-205ENST00000465563 TPRNQ4KMQ1 711 aa12.35□□□□□ -0.43
SMC4-205ENST00000465563 GMPRP36959 345 aa12.33□□□□□ -0.44
SMC4-205ENST00000465563 STK17AQ9UEE5 414 aa12.32□□□□□ -0.44
SMC4-205ENST00000465563 DNMT3LQ9UJW3 386 aa12.32□□□□□ -0.44
SMC4-205ENST00000465563 TTLL8A6PVC2 850 aa12.31□□□□□ -0.44
SMC4-205ENST00000465563 GJD4Q96KN9 370 aaPredicted RBP12.31□□□□□ -0.44
SMC4-205ENST00000465563 ERBB4Q15303 1308 aa12.31□□□□□ -0.44
SMC4-205ENST00000465563 RAB15P59190 212 aa12.3□□□□□ -0.44
SMC4-205ENST00000465563 ZBBXA8MT70 800 aa12.29□□□□□ -0.44
SMC4-205ENST00000465563 SPINT1O43278 529 aa12.29□□□□□ -0.44
SMC4-205ENST00000465563 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.29□□□□□ -0.44
SMC4-205ENST00000465563 BANK1Q8NDB2 785 aa12.28□□□□□ -0.44
SMC4-205ENST00000465563 TMPRSS4Q9NRS4 437 aa12.28□□□□□ -0.44
SMC4-205ENST00000465563 ESPNB1AK53 854 aa12.27□□□□□ -0.45
SMC4-205ENST00000465563 ERVH48-1M5A8F1 160 aa12.27□□□□□ -0.45
SMC4-205ENST00000465563 AGBL1Q96MI9 1066 aa12.27□□□□□ -0.45
SMC4-205ENST00000465563 PPFIA3O75145 1194 aa12.26□□□□□ -0.45
SMC4-205ENST00000465563 ZNF784Q8NCA9 323 aaPredicted RBP12.26□□□□□ -0.45
SMC4-205ENST00000465563 FIGNL2A6NMB9 653 aa12.25□□□□□ -0.45
SMC4-205ENST00000465563 VSIG8P0DPA2 414 aa12.25□□□□□ -0.45
SMC4-205ENST00000465563 RELBQ01201 579 aa12.25□□□□□ -0.45
SMC4-205ENST00000465563 SEPT12Q8IYM1 358 aa12.25□□□□□ -0.45
SMC4-205ENST00000465563 PCDHB9Q9Y5E1 797 aa12.25□□□□□ -0.45
SMC4-205ENST00000465563 FBXO45P0C2W1 286 aa12.24□□□□□ -0.45
SMC4-205ENST00000465563 TRIM52Q96A61 297 aa12.23□□□□□ -0.45
SMC4-205ENST00000465563 SOCS7O14512 581 aa12.22□□□□□ -0.45
SMC4-205ENST00000465563 LILRA1O75019 489 aa12.22□□□□□ -0.45
SMC4-205ENST00000465563 INSM2Q96T92 566 aaPredicted RBP12.22□□□□□ -0.45
SMC4-205ENST00000465563 ADH1AP07327 375 aa12.21□□□□□ -0.45
SMC4-205ENST00000465563 PTSQ03393 145 aa12.21□□□□□ -0.45
SMC4-205ENST00000465563 ZNF395Q9H8N7 513 aaPredicted RBP12.21□□□□□ -0.45
SMC4-205ENST00000465563 APBB1O00213 710 aa12.2□□□□□ -0.46
SMC4-205ENST00000465563 ADD1P35611 737 aaKnown RBP12.2□□□□□ -0.46
SMC4-205ENST00000465563 CTSOP43234 321 aaPredicted RBP12.2□□□□□ -0.46
SMC4-205ENST00000465563 ZSCAN1Q8NBB4 408 aa12.2□□□□□ -0.46
SMC4-205ENST00000465563 MTMR14Q8NCE2 650 aa12.2□□□□□ -0.46
SMC4-205ENST00000465563 POLMQ9NP87 494 aaPredicted RBP12.2□□□□□ -0.46
SMC4-205ENST00000465563 GIGYF1O75420 1035 aaPredicted RBP12.19□□□□□ -0.46
SMC4-205ENST00000465563 NDUFB9Q9Y6M9 179 aa12.19□□□□□ -0.46
SMC4-205ENST00000465563 FAM181BA6NEQ2 426 aa12.18□□□□□ -0.46
SMC4-205ENST00000465563 MCCD1P59942 119 aaPredicted RBP12.18□□□□□ -0.46
SMC4-205ENST00000465563 NR1H3Q13133 447 aa12.18□□□□□ -0.46
SMC4-205ENST00000465563 CCDC125Q86Z20 511 aa12.18□□□□□ -0.46
SMC4-205ENST00000465563 CYLDQ9NQC7 956 aa12.18□□□□□ -0.46
SMC4-205ENST00000465563 PTGIRP43119 386 aa12.17□□□□□ -0.46
SMC4-205ENST00000465563 ZNF592Q92610 1267 aa12.17□□□□□ -0.46
SMC4-205ENST00000465563 SNRKQ9NRH2 765 aa12.17□□□□□ -0.46
SMC4-205ENST00000465563 ZNF330Q9Y3S2 320 aaPredicted RBP12.17□□□□□ -0.46
SMC4-205ENST00000465563 LORP23490 312 aaPredicted RBP12.16□□□□□ -0.46
SMC4-205ENST00000465563 RNF20Q5VTR2 975 aa12.16□□□□□ -0.46
SMC4-205ENST00000465563 CCDC155Q8N6L0 562 aa12.15□□□□□ -0.46
SMC4-205ENST00000465563 KDF1Q8NAX2 398 aaPredicted RBP12.15□□□□□ -0.46
SMC4-205ENST00000465563 RNF217Q8TC41 542 aa12.15□□□□□ -0.46
SMC4-205ENST00000465563 SLC35F4A4IF30 521 aa12.13□□□□□ -0.47
SMC4-205ENST00000465563 GPR37L1O60883 481 aa12.13□□□□□ -0.47
SMC4-205ENST00000465563 ATP5J2-PTCD1G3V325 749 aa12.1□□□□□ -0.47
SMC4-205ENST00000465563 FOXD4L5Q5VV16 416 aaPredicted RBP12.1□□□□□ -0.47
SMC4-205ENST00000465563 NANOS1Q8WY41 292 aaKnown RBP12.1□□□□□ -0.47
SMC4-205ENST00000465563 ERVK-9P63128 1117 aa12.09□□□□□ -0.47
SMC4-205ENST00000465563 CC2D2BQ6DHV5 1058 aa12.09□□□□□ -0.47
SMC4-205ENST00000465563 ITGA6P23229 1130 aa12.08□□□□□ -0.48
SMC4-205ENST00000465563 GPR161Q8N6U8 529 aaKnown RBP12.08□□□□□ -0.48
SMC4-205ENST00000465563 PRM3Q9NNZ6 103 aa12.08□□□□□ -0.48
SMC4-205ENST00000465563 RNF144AP50876 292 aaPredicted RBP12.07□□□□□ -0.48
SMC4-205ENST00000465563 LYSMD3Q7Z3D4 306 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms