RNA–Protein interactions for RNA: ENST00000465282.5

USP39-211, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-211ENST00000465282 VPS72Q15906 364 aa23.14■■□□□ 1.29
USP39-211ENST00000465282 POTEAQ6S8J7 498 aa23.14■■□□□ 1.29
USP39-211ENST00000465282 EVA1CP58658 441 aa23.13■■□□□ 1.29
USP39-211ENST00000465282 ZBTB7CA1YPR0 619 aa23.12■■□□□ 1.29
USP39-211ENST00000465282 ZNF316A6NFI3 1004 aaPredicted RBP23.12■■□□□ 1.29
USP39-211ENST00000465282 RBM6P78332 1123 aaKnown RBP23.12■■□□□ 1.29
USP39-211ENST00000465282 MORC1Q86VD1 984 aa23.12■■□□□ 1.29
USP39-211ENST00000465282 MAP3K19Q56UN5 1328 aa23.11■■□□□ 1.29
USP39-211ENST00000465282 BLMP54132 1417 aaPredicted RBP23.11■■□□□ 1.29
USP39-211ENST00000465282 RXRBP28702 533 aa23.11■■□□□ 1.29
USP39-211ENST00000465282 IP6K1Q92551 441 aa23.11■■□□□ 1.29
USP39-211ENST00000465282 RTL1A6NKG5 1358 aa23.11■■□□□ 1.29
USP39-211ENST00000465282 COL5A2P05997 1499 aaPredicted RBP23.11■■□□□ 1.29
USP39-211ENST00000465282 GJD4Q96KN9 370 aaPredicted RBP23.1■■□□□ 1.29
USP39-211ENST00000465282 AMPHP49418 695 aa23.09■■□□□ 1.29
USP39-211ENST00000465282 AXIN2Q9Y2T1 843 aa23.09■■□□□ 1.29
USP39-211ENST00000465282 CDK12Q9NYV4 1490 aaPredicted RBP23.07■■□□□ 1.28
USP39-211ENST00000465282 STRN4Q9NRL3 753 aa23.07■■□□□ 1.28
USP39-211ENST00000465282 FBLN1P23142 703 aa23.06■■□□□ 1.28
USP39-211ENST00000465282 HOXC9P31274 260 aa23.06■■□□□ 1.28
USP39-211ENST00000465282 DDX10Q13206 875 aaKnown RBP23.06■■□□□ 1.28
USP39-211ENST00000465282 RRS1Q15050 365 aaKnown RBP23.06■■□□□ 1.28
USP39-211ENST00000465282 CCDC9Q9Y3X0 531 aaKnown RBP23.06■■□□□ 1.28
USP39-211ENST00000465282 FAM208AQ9UK61 1670 aaKnown RBP23.06■■□□□ 1.28
USP39-211ENST00000465282 SPATA31A5Q5VU36 1347 aa23.06■■□□□ 1.28
USP39-211ENST00000465282 SPATA31A7Q8IWB4 1347 aa23.06■■□□□ 1.28
USP39-211ENST00000465282 WDR17Q8IZU2 1322 aa23.06■■□□□ 1.28
USP39-211ENST00000465282 FLT4P35916 1363 aa23.05■■□□□ 1.28
USP39-211ENST00000465282 CC2D1BQ5T0F9 858 aaKnown RBP23.04■■□□□ 1.28
USP39-211ENST00000465282 POLKQ9UBT6 870 aa23.04■■□□□ 1.28
USP39-211ENST00000465282 CRB1P82279 1406 aa23.04■■□□□ 1.28
USP39-211ENST00000465282 GLI3P10071 1580 aa23.04■■□□□ 1.28
USP39-211ENST00000465282 ERBB3P21860 1342 aa23.04■■□□□ 1.28
USP39-211ENST00000465282 SPATA31A1Q5TZJ5 1347 aa23.04■■□□□ 1.28
USP39-211ENST00000465282 LARP1Q6PKG0 1096 aaKnown RBP23.03■■□□□ 1.28
USP39-211ENST00000465282 THRAP3Q9Y2W1 955 aaKnown RBP23.03■■□□□ 1.28
USP39-211ENST00000465282 INSRP06213 1382 aa23.02■■□□□ 1.28
USP39-211ENST00000465282 PEAK1Q9H792 1746 aa23.02■■□□□ 1.28
USP39-211ENST00000465282 TNNT2P45379 298 aaPredicted RBP23.02■■□□□ 1.28
USP39-211ENST00000465282 SMG6Q86US8 1419 aaKnown RBP23.01■■□□□ 1.27
USP39-211ENST00000465282 ONECUT3O60422 494 aaPredicted RBP23.01■■□□□ 1.27
USP39-211ENST00000465282 CSB-PGBD3P0DP91 1061 aa23.01■■□□□ 1.27
USP39-211ENST00000465282 TOM1L2Q6ZVM7 507 aa23.01■■□□□ 1.27
USP39-211ENST00000465282 ANKRD24Q8TF21 1146 aa23■■□□□ 1.27
USP39-211ENST00000465282 CARD10Q9BWT7 1032 aa23■■□□□ 1.27
USP39-211ENST00000465282 EMILIN1Q9Y6C2 1016 aa23■■□□□ 1.27
USP39-211ENST00000465282 TCP11L2Q8N4U5 519 aa22.99■■□□□ 1.27
USP39-211ENST00000465282 PPM1GO15355 546 aaPredicted RBP22.98■■□□□ 1.27
USP39-211ENST00000465282 BARGINQ6ZT62 677 aa22.98■■□□□ 1.27
USP39-211ENST00000465282 HSP90AB2PQ58FF8 381 aa22.97■■□□□ 1.27
USP39-211ENST00000465282 FAM98CQ17RN3 349 aaKnown RBP22.94■■□□□ 1.26
USP39-211ENST00000465282 CDCA7Q9BWT1 371 aaPredicted RBP22.94■■□□□ 1.26
USP39-211ENST00000465282 NLRP2Q9NX02 1062 aa22.94■■□□□ 1.26
USP39-211ENST00000465282 USP35Q9P2H5 1018 aa22.94■■□□□ 1.26
USP39-211ENST00000465282 THSD7AQ9UPZ6 1657 aa22.93■■□□□ 1.26
USP39-211ENST00000465282 RGS12O14924 1447 aa22.93■■□□□ 1.26
USP39-211ENST00000465282 LTV1Q96GA3 475 aaPredicted RBP22.93■■□□□ 1.26
USP39-211ENST00000465282 WNK3Q9BYP7 1800 aa22.93■■□□□ 1.26
USP39-211ENST00000465282 PARD3Q8TEW0 1356 aa22.92■■□□□ 1.26
USP39-211ENST00000465282 RGPD2P0DJD1 1756 aa22.92■■□□□ 1.26
USP39-211ENST00000465282 MTHFSP49914 203 aa22.92■■□□□ 1.26
USP39-211ENST00000465282 CNGB1Q14028 1251 aaPredicted RBP22.91■■□□□ 1.26
USP39-211ENST00000465282 RALBP1Q15311 655 aa22.91■■□□□ 1.26
USP39-211ENST00000465282 SEPT12Q8IYM1 358 aa22.91■■□□□ 1.26
USP39-211ENST00000465282 PARP4Q9UKK3 1724 aaKnown RBP22.91■■□□□ 1.26
USP39-211ENST00000465282 BRWD3Q6RI45 1802 aa22.89■■□□□ 1.26
USP39-211ENST00000465282 A0A0G2JS52 829 aa22.87■■□□□ 1.25
USP39-211ENST00000465282 PPP2R1AP30153 589 aa22.87■■□□□ 1.25
USP39-211ENST00000465282 MYT1Q01538 1121 aa22.87■■□□□ 1.25
USP39-211ENST00000465282 DISP2A7MBM2 1401 aa22.86■■□□□ 1.25
USP39-211ENST00000465282 EIF4A2Q14240 407 aaKnown RBP22.86■■□□□ 1.25
USP39-211ENST00000465282 NBPF6Q5VWK0 638 aa22.86■■□□□ 1.25
USP39-211ENST00000465282 NBPF4Q96M43 638 aa22.86■■□□□ 1.25
USP39-211ENST00000465282 IL2RBP14784 551 aa22.85■■□□□ 1.25
USP39-211ENST00000465282 NCAPD2Q15021 1401 aa22.84■■□□□ 1.25
USP39-211ENST00000465282 CFAP53Q96M91 514 aa22.84■■□□□ 1.25
USP39-211ENST00000465282 KRT27Q7Z3Y8 459 aa22.82■■□□□ 1.24
USP39-211ENST00000465282 EYA1Q99502 592 aa22.82■■□□□ 1.24
USP39-211ENST00000465282 DIAPH1O60610 1272 aaKnown RBP22.81■■□□□ 1.24
USP39-211ENST00000465282 IL13P35225 146 aa22.81■■□□□ 1.24
USP39-211ENST00000465282 PDE3BQ13370 1112 aa22.81■■□□□ 1.24
USP39-211ENST00000465282 DDB1Q16531 1140 aa22.81■■□□□ 1.24
USP39-211ENST00000465282 RGPD1P0DJD0 1748 aa22.81■■□□□ 1.24
USP39-211ENST00000465282 LRRC37A3O60309 1634 aa22.81■■□□□ 1.24
USP39-211ENST00000465282 IGSF1Q8N6C5 1336 aa22.81■■□□□ 1.24
USP39-211ENST00000465282 PLEKHG2Q9H7P9 1386 aa22.8■■□□□ 1.24
USP39-211ENST00000465282 EXOC5O00471 708 aa22.8■■□□□ 1.24
USP39-211ENST00000465282 RAPGEF4Q8WZA2 1011 aa22.8■■□□□ 1.24
USP39-211ENST00000465282 PRKRIP1Q9H875 184 aaPredicted RBP22.8■■□□□ 1.24
USP39-211ENST00000465282 COL3A1P02461 1466 aaPredicted RBP22.79■■□□□ 1.24
USP39-211ENST00000465282 MYBBP1AQ9BQG0 1328 aaKnown RBP22.79■■□□□ 1.24
USP39-211ENST00000465282 TNS2Q63HR2 1409 aa22.77■■□□□ 1.24
USP39-211ENST00000465282 EP400Q96L91 3159 aa22.77■■□□□ 1.24
USP39-211ENST00000465282 OVOS2A0A0G2JMS6 1433 aa22.76■■□□□ 1.23
USP39-211ENST00000465282 TATP17735 454 aaPredicted RBP22.76■■□□□ 1.23
USP39-211ENST00000465282 USHBP1Q8N6Y0 703 aa22.76■■□□□ 1.23
USP39-211ENST00000465282 NUDCQ9Y266 331 aa22.75■■□□□ 1.23
USP39-211ENST00000465282 KDRP35968 1356 aa22.75■■□□□ 1.23
USP39-211ENST00000465282 MEGF6O75095 1541 aa22.74■■□□□ 1.23
USP39-211ENST00000465282 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.74■■□□□ 1.239e-7■□□□□ 8.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms