RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 CHRDL2Q6WN34 429 aa9.06□□□□□ -0.96
USP48-206ENST00000464577 TBC1D9Q6ZT07 1266 aa9.06□□□□□ -0.96
USP48-206ENST00000464577 ANP32BQ92688 251 aaKnown RBP9.06□□□□□ -0.96
USP48-206ENST00000464577 FRMPD1Q5SYB0 1578 aa9.06□□□□□ -0.96
USP48-206ENST00000464577 CDC45O75419 566 aa9.06□□□□□ -0.96
USP48-206ENST00000464577 OFD1O75665 1012 aa9.06□□□□□ -0.96
USP48-206ENST00000464577 CD2BP2O95400 341 aaKnown RBP9.06□□□□□ -0.96
USP48-206ENST00000464577 BAG4O95429 457 aaKnown RBP9.06□□□□□ -0.96
USP48-206ENST00000464577 SSFA2P28290 1259 aa9.06□□□□□ -0.96
USP48-206ENST00000464577 RIPK4P57078 832 aa9.06□□□□□ -0.96
USP48-206ENST00000464577 TMEM132EQ6IEE7 984 aa9.06□□□□□ -0.96
USP48-206ENST00000464577 VSIG10Q8N0Z9 540 aa9.06□□□□□ -0.96
USP48-206ENST00000464577 LRRC7Q96NW7 1537 aa9.06□□□□□ -0.96
USP48-206ENST00000464577 ATAD2Q6PL18 1390 aa9.05□□□□□ -0.96
USP48-206ENST00000464577 ABCC3O15438 1527 aa9.05□□□□□ -0.96
USP48-206ENST00000464577 ZBTB7BO15156 539 aaPredicted RBP9.05□□□□□ -0.96
USP48-206ENST00000464577 CHGAP10645 457 aaKnown RBP9.05□□□□□ -0.96
USP48-206ENST00000464577 RABEP1Q15276 862 aa9.05□□□□□ -0.96
USP48-206ENST00000464577 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.05□□□□□ -0.96
USP48-206ENST00000464577 GAS2L2Q8NHY3 880 aa9.05□□□□□ -0.96
USP48-206ENST00000464577 PDCL3Q9H2J4 239 aa9.05□□□□□ -0.96
USP48-206ENST00000464577 FAM135BQ49AJ0 1406 aa9.05□□□□□ -0.96
USP48-206ENST00000464577 KIF24Q5T7B8 1368 aa9.05□□□□□ -0.96
USP48-206ENST00000464577 NUCB2P80303 420 aa9.04□□□□□ -0.96
USP48-206ENST00000464577 ANKRD45Q5TZF3 282 aa9.04□□□□□ -0.96
USP48-206ENST00000464577 ZMYND15Q9H091 742 aa9.04□□□□□ -0.96
USP48-206ENST00000464577 ASXL2Q76L83 1435 aa9.04□□□□□ -0.96
USP48-206ENST00000464577 ABCC4O15439 1325 aa9.04□□□□□ -0.96
USP48-206ENST00000464577 CD163L1Q9NR16 1453 aa9.04□□□□□ -0.96
USP48-206ENST00000464577 DIAPH1O60610 1272 aaKnown RBP9.04□□□□□ -0.96
USP48-206ENST00000464577 KIAA1211Q6ZU35 1233 aa9.04□□□□□ -0.96
USP48-206ENST00000464577 MRPL50Q8N5N7 158 aaKnown RBP9.04□□□□□ -0.96
USP48-206ENST00000464577 DDX49Q9Y6V7 483 aaKnown RBP9.04□□□□□ -0.96
USP48-206ENST00000464577 YEATS2Q9ULM3 1422 aa9.04□□□□□ -0.96
USP48-206ENST00000464577 KIF20BQ96Q89 1820 aa9.04□□□□□ -0.96
USP48-206ENST00000464577 FCHSD2O94868 740 aa9.03□□□□□ -0.96
USP48-206ENST00000464577 CYP2E1P05181 493 aaPredicted RBP9.03□□□□□ -0.96
USP48-206ENST00000464577 CALD1Q05682 793 aaKnown RBP9.03□□□□□ -0.96
USP48-206ENST00000464577 CABP2Q9NPB3 220 aa9.03□□□□□ -0.96
USP48-206ENST00000464577 VGFO15240 615 aaPredicted RBP9.03□□□□□ -0.96
USP48-206ENST00000464577 MSNP26038 577 aaKnown RBP9.03□□□□□ -0.96
USP48-206ENST00000464577 TERF2IPQ9NYB0 399 aa9.03□□□□□ -0.96
USP48-206ENST00000464577 MLH3Q9UHC1 1453 aa9.02□□□□□ -0.96
USP48-206ENST00000464577 PDLIM2Q96JY6 352 aa9.02□□□□□ -0.97
USP48-206ENST00000464577 RBM42Q9BTD8 480 aaKnown RBP9.02□□□□□ -0.97
USP48-206ENST00000464577 GGNBP2Q9H3C7 697 aa9.02□□□□□ -0.97
USP48-206ENST00000464577 CWC22Q9HCG8 908 aaKnown RBP9.02□□□□□ -0.97
USP48-206ENST00000464577 PTPRMP28827 1452 aa9.02□□□□□ -0.97
USP48-206ENST00000464577 FYB1O15117 783 aa9.01□□□□□ -0.97
USP48-206ENST00000464577 ZNF500O60304 480 aaPredicted RBP9.01□□□□□ -0.97
USP48-206ENST00000464577 VAMP4O75379 141 aa9.01□□□□□ -0.97
USP48-206ENST00000464577 SLC4A2P04920 1241 aa9.01□□□□□ -0.97
USP48-206ENST00000464577 SIRT2Q8IXJ6 389 aa9.01□□□□□ -0.97
USP48-206ENST00000464577 MAP7D2Q96T17 732 aa9.01□□□□□ -0.97
USP48-206ENST00000464577 FOXD4L1Q9NU39 408 aa9.01□□□□□ -0.97
USP48-206ENST00000464577 POGZQ7Z3K3 1410 aa9.01□□□□□ -0.97
USP48-206ENST00000464577 SIGLEC1Q9BZZ2 1709 aa9.01□□□□□ -0.97
USP48-206ENST00000464577 LMBRD1Q9NUN5 540 aa9.01□□□□□ -0.97
USP48-206ENST00000464577 IFT57Q9NWB7 429 aa9.01□□□□□ -0.97
USP48-206ENST00000464577 NOL7Q9UMY1 257 aaKnown RBP9.01□□□□□ -0.97
USP48-206ENST00000464577 GSPT1P15170 499 aaKnown RBP9□□□□□ -0.97
USP48-206ENST00000464577 MCM5P33992 734 aa9□□□□□ -0.97
USP48-206ENST00000464577 NFE2L2Q16236 605 aa9□□□□□ -0.97
USP48-206ENST00000464577 ZSCAN23Q3MJ62 389 aa9□□□□□ -0.97
USP48-206ENST00000464577 API5Q9BZZ5 524 aaKnown RBP9□□□□□ -0.97
USP48-206ENST00000464577 KNDC1Q76NI1 1749 aa9□□□□□ -0.97
USP48-206ENST00000464577 ZNF853P0CG23 659 aa9□□□□□ -0.97
USP48-206ENST00000464577 GNAI1P63096 354 aa9□□□□□ -0.97
USP48-206ENST00000464577 TTC22Q5TAA0 569 aa9□□□□□ -0.97
USP48-206ENST00000464577 SRPK2P78362 688 aaKnown RBP8.99□□□□□ -0.97
USP48-206ENST00000464577 INTS3Q68E01 1043 aaKnown RBP8.99□□□□□ -0.97
USP48-206ENST00000464577 MCTP1Q6DN14 999 aa8.99□□□□□ -0.97
USP48-206ENST00000464577 PLEKHM2Q8IWE5 1019 aa8.99□□□□□ -0.97
USP48-206ENST00000464577 USP26Q9BXU7 913 aa8.99□□□□□ -0.97
USP48-206ENST00000464577 C1orf115Q9H7X2 142 aa8.99□□□□□ -0.97
USP48-206ENST00000464577 PRKAR2BP31323 418 aa8.98□□□□□ -0.97
USP48-206ENST00000464577 HDGFL2Q7Z4V5 671 aaPredicted RBP8.98□□□□□ -0.97
USP48-206ENST00000464577 DCTPP1Q9H773 170 aa8.98□□□□□ -0.97
USP48-206ENST00000464577 CSPP1Q1MSJ5 1256 aa8.98□□□□□ -0.97
USP48-206ENST00000464577 CAVIN1Q6NZI2 390 aaKnown RBP8.98□□□□□ -0.97
USP48-206ENST00000464577 RBSNQ9H1K0 784 aa8.98□□□□□ -0.97
USP48-206ENST00000464577 ST18O60284 1047 aa8.97□□□□□ -0.97
USP48-206ENST00000464577 ZKSCAN5Q9Y2L8 839 aa8.97□□□□□ -0.97
USP48-206ENST00000464577 ATP7BP35670 1465 aa8.97□□□□□ -0.97
USP48-206ENST00000464577 ARHGEF40Q8TER5 1519 aa8.97□□□□□ -0.97
USP48-206ENST00000464577 CPSF1Q10570 1443 aaKnown RBP8.97□□□□□ -0.97
USP48-206ENST00000464577 YTHDC2Q9H6S0 1430 aaKnown RBP8.97□□□□□ -0.97
USP48-206ENST00000464577 ATP10DQ9P241 1426 aa8.97□□□□□ -0.97
USP48-206ENST00000464577 CDK12Q9NYV4 1490 aaPredicted RBP8.97□□□□□ -0.97
USP48-206ENST00000464577 LMOD3Q0VAK6 560 aa8.96□□□□□ -0.97
USP48-206ENST00000464577 CASC1Q6TDU7 716 aa8.96□□□□□ -0.97
USP48-206ENST00000464577 MTERF4Q7Z6M4 381 aaKnown RBP8.96□□□□□ -0.97
USP48-206ENST00000464577 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.96□□□□□ -0.97
USP48-206ENST00000464577 LRSAM1Q6UWE0 723 aa8.96□□□□□ -0.98
USP48-206ENST00000464577 TSPYL6Q8N831 410 aa8.96□□□□□ -0.98
USP48-206ENST00000464577 MBIPQ9NS73 344 aa8.96□□□□□ -0.98
USP48-206ENST00000464577 CCDC39Q9UFE4 941 aa8.96□□□□□ -0.98
USP48-206ENST00000464577 CFAP65Q6ZU64 1925 aaKnown RBP8.96□□□□□ -0.98
USP48-206ENST00000464577 MBD3O95983 291 aa8.95□□□□□ -0.98
USP48-206ENST00000464577 PRIM1P49642 420 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms