RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 CC2D1BQ5T0F9 858 aaKnown RBP10.44□□□□□ -0.74
USP4-207ENST00000462673 COL14A1Q05707 1796 aaKnown RBP10.44□□□□□ -0.74
USP4-207ENST00000462673 SLIT3O75094 1523 aa10.43□□□□□ -0.74
USP4-207ENST00000462673 SLIT2O94813 1529 aa10.43□□□□□ -0.74
USP4-207ENST00000462673 OVOS2A0A0J9YW53 1432 aa10.43□□□□□ -0.74
USP4-207ENST00000462673 BLMP54132 1417 aaPredicted RBP10.43□□□□□ -0.74
USP4-207ENST00000462673 OVOS2Q6IE36 1432 aa10.43□□□□□ -0.74
USP4-207ENST00000462673 NEFLP07196 543 aa10.43□□□□□ -0.74
USP4-207ENST00000462673 TNNT2P45379 298 aaPredicted RBP10.43□□□□□ -0.74
USP4-207ENST00000462673 RALBP1Q15311 655 aa10.43□□□□□ -0.74
USP4-207ENST00000462673 CFAP53Q96M91 514 aa10.43□□□□□ -0.74
USP4-207ENST00000462673 PIK3C2AO00443 1686 aa10.43□□□□□ -0.74
USP4-207ENST00000462673 NRKQ7Z2Y5 1582 aa10.43□□□□□ -0.74
USP4-207ENST00000462673 SMG6Q86US8 1419 aaKnown RBP10.42□□□□□ -0.74
USP4-207ENST00000462673 RTL1A6NKG5 1358 aa10.42□□□□□ -0.74
USP4-207ENST00000462673 MAP3K19Q56UN5 1328 aa10.42□□□□□ -0.74
USP4-207ENST00000462673 MYOM1P52179 1685 aa10.42□□□□□ -0.74
USP4-207ENST00000462673 HOXC9P31274 260 aa10.42□□□□□ -0.74
USP4-207ENST00000462673 TCP11L2Q8N4U5 519 aa10.42□□□□□ -0.74
USP4-207ENST00000462673 RGS17Q9UGC6 210 aaPredicted RBP10.42□□□□□ -0.74
USP4-207ENST00000462673 BCL9LQ86UU0 1499 aa10.42□□□□□ -0.74
USP4-207ENST00000462673 MARF1Q9Y4F3 1742 aaKnown RBP10.41□□□□□ -0.74
USP4-207ENST00000462673 FLT4P35916 1363 aa10.41□□□□□ -0.74
USP4-207ENST00000462673 WDR17Q8IZU2 1322 aa10.41□□□□□ -0.74
USP4-207ENST00000462673 A0A0G2JS52 829 aa10.41□□□□□ -0.74
USP4-207ENST00000462673 ONECUT3O60422 494 aaPredicted RBP10.41□□□□□ -0.74
USP4-207ENST00000462673 RRS1Q15050 365 aaKnown RBP10.41□□□□□ -0.74
USP4-207ENST00000462673 POTEAQ6S8J7 498 aa10.41□□□□□ -0.74
USP4-207ENST00000462673 BARGINQ6ZT62 677 aa10.41□□□□□ -0.74
USP4-207ENST00000462673 ANKRD24Q8TF21 1146 aa10.41□□□□□ -0.74
USP4-207ENST00000462673 CARD10Q9BWT7 1032 aa10.41□□□□□ -0.74
USP4-207ENST00000462673 NLRP2Q9NX02 1062 aa10.41□□□□□ -0.74
USP4-207ENST00000462673 POLKQ9UBT6 870 aa10.41□□□□□ -0.74
USP4-207ENST00000462673 AXIN2Q9Y2T1 843 aa10.41□□□□□ -0.74
USP4-207ENST00000462673 SPATA31A5Q5VU36 1347 aa10.4□□□□□ -0.74
USP4-207ENST00000462673 SPATA31A7Q8IWB4 1347 aa10.4□□□□□ -0.74
USP4-207ENST00000462673 ABCC6O95255 1503 aa10.4□□□□□ -0.74
USP4-207ENST00000462673 CNGB1Q14028 1251 aaPredicted RBP10.4□□□□□ -0.74
USP4-207ENST00000462673 LARP1Q6PKG0 1096 aaKnown RBP10.4□□□□□ -0.74
USP4-207ENST00000462673 USP35Q9P2H5 1018 aa10.4□□□□□ -0.74
USP4-207ENST00000462673 NUDCQ9Y266 331 aa10.4□□□□□ -0.74
USP4-207ENST00000462673 NWD2Q9ULI1 1742 aa10.4□□□□□ -0.74
USP4-207ENST00000462673 PHRF1Q9P1Y6 1649 aaKnown RBP10.4□□□□□ -0.75
USP4-207ENST00000462673 INSRP06213 1382 aa10.39□□□□□ -0.75
USP4-207ENST00000462673 SPATA31A1Q5TZJ5 1347 aa10.39□□□□□ -0.75
USP4-207ENST00000462673 USP54Q70EL1 1684 aa10.39□□□□□ -0.75
USP4-207ENST00000462673 PDE3BQ13370 1112 aa10.39□□□□□ -0.75
USP4-207ENST00000462673 LTV1Q96GA3 475 aaPredicted RBP10.39□□□□□ -0.75
USP4-207ENST00000462673 KIF20BQ96Q89 1820 aa10.39□□□□□ -0.75
USP4-207ENST00000462673 ATRNO75882 1429 aa10.39□□□□□ -0.75
USP4-207ENST00000462673 CRB1P82279 1406 aa10.39□□□□□ -0.75
USP4-207ENST00000462673 ERBB3P21860 1342 aa10.38□□□□□ -0.75
USP4-207ENST00000462673 EXOC5O00471 708 aa10.38□□□□□ -0.75
USP4-207ENST00000462673 ANP32CO43423 234 aa10.38□□□□□ -0.75
USP4-207ENST00000462673 MTHFSP49914 203 aa10.38□□□□□ -0.75
USP4-207ENST00000462673 HSP90AB2PQ58FF8 381 aa10.38□□□□□ -0.75
USP4-207ENST00000462673 PNNQ9H307 717 aaKnown RBP10.38□□□□□ -0.75
USP4-207ENST00000462673 DIAPH1O60610 1272 aaKnown RBP10.37□□□□□ -0.75
USP4-207ENST00000462673 FBLN1P23142 703 aa10.37□□□□□ -0.75
USP4-207ENST00000462673 FAM98CQ17RN3 349 aaKnown RBP10.37□□□□□ -0.75
USP4-207ENST00000462673 SEPT12Q8IYM1 358 aa10.37□□□□□ -0.75
USP4-207ENST00000462673 RAPGEF4Q8WZA2 1011 aa10.37□□□□□ -0.75
USP4-207ENST00000462673 ABCA3Q99758 1704 aa10.37□□□□□ -0.75
USP4-207ENST00000462673 BCL11AQ9H165 835 aa10.37□□□□□ -0.75
USP4-207ENST00000462673 EMILIN1Q9Y6C2 1016 aa10.37□□□□□ -0.75
USP4-207ENST00000462673 CAMTA1Q9Y6Y1 1673 aa10.37□□□□□ -0.75
USP4-207ENST00000462673 NFAT5O94916 1531 aa10.37□□□□□ -0.75
USP4-207ENST00000462673 COL5A2P05997 1499 aaPredicted RBP10.36□□□□□ -0.75
USP4-207ENST00000462673 CDK12Q9NYV4 1490 aaPredicted RBP10.36□□□□□ -0.75
USP4-207ENST00000462673 CRYBG1Q9Y4K1 1723 aa10.36□□□□□ -0.75
USP4-207ENST00000462673 NEFMP07197 916 aa10.36□□□□□ -0.75
USP4-207ENST00000462673 IL2RBP14784 551 aa10.36□□□□□ -0.75
USP4-207ENST00000462673 DDB1Q16531 1140 aa10.36□□□□□ -0.75
USP4-207ENST00000462673 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.36□□□□□ -0.75
USP4-207ENST00000462673 TATP17735 454 aaPredicted RBP10.35□□□□□ -0.75
USP4-207ENST00000462673 PPP2R1AP30153 589 aa10.35□□□□□ -0.75
USP4-207ENST00000462673 CCDC125Q86Z20 511 aa10.35□□□□□ -0.75
USP4-207ENST00000462673 CCER2I3L3R5 266 aa10.34□□□□□ -0.75
USP4-207ENST00000462673 KRT27Q7Z3Y8 459 aa10.34□□□□□ -0.75
USP4-207ENST00000462673 PLCH1Q4KWH8 1693 aa10.34□□□□□ -0.75
USP4-207ENST00000462673 ANKRD26Q9UPS8 1709 aa10.33□□□□□ -0.76
USP4-207ENST00000462673 MAP2P11137 1827 aaKnown RBP10.33□□□□□ -0.76
USP4-207ENST00000462673 SF3B2Q13435 895 aaKnown RBP10.33□□□□□ -0.76
USP4-207ENST00000462673 EIF4A2Q14240 407 aaKnown RBP10.33□□□□□ -0.76
USP4-207ENST00000462673 NBPF6Q5VWK0 638 aa10.33□□□□□ -0.76
USP4-207ENST00000462673 FAM196AQ6ZSG2 479 aa10.33□□□□□ -0.76
USP4-207ENST00000462673 NBPF4Q96M43 638 aa10.33□□□□□ -0.76
USP4-207ENST00000462673 SPG7Q9UQ90 795 aa10.33□□□□□ -0.76
USP4-207ENST00000462673 LTN1O94822 1766 aa10.33□□□□□ -0.76
USP4-207ENST00000462673 MYBBP1AQ9BQG0 1328 aaKnown RBP10.33□□□□□ -0.76
USP4-207ENST00000462673 LMO7Q8WWI1 1683 aa10.32□□□□□ -0.76
USP4-207ENST00000462673 HMGB2P26583 209 aaKnown RBP10.32□□□□□ -0.76
USP4-207ENST00000462673 FKBP8Q14318 412 aa10.32□□□□□ -0.76
USP4-207ENST00000462673 AMOTQ4VCS5 1084 aa10.32□□□□□ -0.76
USP4-207ENST00000462673 PRKRIP1Q9H875 184 aaPredicted RBP10.32□□□□□ -0.76
USP4-207ENST00000462673 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.32□□□□□ -0.76
USP4-207ENST00000462673 COL18A1P39060 1754 aa10.31□□□□□ -0.76
USP4-207ENST00000462673 PARD3Q8TEW0 1356 aa10.31□□□□□ -0.76
USP4-207ENST00000462673 U2SURPO15042 1029 aaKnown RBP10.31□□□□□ -0.76
USP4-207ENST00000462673 PLEKHO1Q53GL0 409 aaPredicted RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms