RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 MARCH10Q8NA82 808 aaPredicted RBP17.68■□□□□ 0.42
HDAC4-207ENST00000461113 PEAK1Q9H792 1746 aa17.68■□□□□ 0.42
HDAC4-207ENST00000461113 RGPD3A6NKT7 1758 aaPredicted RBP17.68■□□□□ 0.42
HDAC4-207ENST00000461113 RGPD4Q7Z3J3 1758 aa17.68■□□□□ 0.42
HDAC4-207ENST00000461113 PARP4Q9UKK3 1724 aaKnown RBP17.67■□□□□ 0.42
HDAC4-207ENST00000461113 CRB1P82279 1406 aa17.67■□□□□ 0.42
HDAC4-207ENST00000461113 ZBTB7CA1YPR0 619 aa17.67■□□□□ 0.42
HDAC4-207ENST00000461113 COL5A2P05997 1499 aaPredicted RBP17.67■□□□□ 0.42
HDAC4-207ENST00000461113 ADGRB1O14514 1584 aa17.66■□□□□ 0.42
HDAC4-207ENST00000461113 GCP02774 474 aa17.66■□□□□ 0.42
HDAC4-207ENST00000461113 LMO7Q8WWI1 1683 aa17.66■□□□□ 0.42
HDAC4-207ENST00000461113 USP19O94966 1318 aa17.66■□□□□ 0.42
HDAC4-207ENST00000461113 ACEP12821 1306 aa17.66■□□□□ 0.42
HDAC4-207ENST00000461113 KIAA1210Q9ULL0 1709 aa17.65■□□□□ 0.42
HDAC4-207ENST00000461113 MAP3K5Q99683 1374 aa17.65■□□□□ 0.42
HDAC4-207ENST00000461113 PELP1Q8IZL8 1130 aaKnown RBP17.64■□□□□ 0.41
HDAC4-207ENST00000461113 CHD4Q14839 1912 aa17.64■□□□□ 0.41
HDAC4-207ENST00000461113 POLR3AO14802 1390 aaPredicted RBP17.64■□□□□ 0.41
HDAC4-207ENST00000461113 TOM1L2Q6ZVM7 507 aa17.63■□□□□ 0.41
HDAC4-207ENST00000461113 NLRP13Q86W25 1043 aa17.63■□□□□ 0.41
HDAC4-207ENST00000461113 CENPJQ9HC77 1338 aaPredicted RBP17.63■□□□□ 0.41
HDAC4-207ENST00000461113 CDK19Q9BWU1 502 aa17.62■□□□□ 0.41
HDAC4-207ENST00000461113 KLHL34Q8N239 644 aa17.61■□□□□ 0.41
HDAC4-207ENST00000461113 BCL9O00512 1426 aa17.61■□□□□ 0.41
HDAC4-207ENST00000461113 LRRC37A3O60309 1634 aa17.61■□□□□ 0.41
HDAC4-207ENST00000461113 PLEKHG3A1L390 1219 aa17.6■□□□□ 0.41
HDAC4-207ENST00000461113 SLC24A1O60721 1099 aa17.6■□□□□ 0.41
HDAC4-207ENST00000461113 CCDC61Q9Y6R9 512 aa17.59■□□□□ 0.41
HDAC4-207ENST00000461113 CDCA7Q9BWT1 371 aaPredicted RBP17.58■□□□□ 0.4
HDAC4-207ENST00000461113 SBF2Q86WG5 1849 aa17.58■□□□□ 0.4
HDAC4-207ENST00000461113 TRPM1Q7Z4N2 1603 aa17.58■□□□□ 0.4
HDAC4-207ENST00000461113 AATKQ6ZMQ8 1374 aa17.57■□□□□ 0.4
HDAC4-207ENST00000461113 ZNF827Q17R98 1081 aa17.55■□□□□ 0.4
HDAC4-207ENST00000461113 AXIN2Q9Y2T1 843 aa17.55■□□□□ 0.4
HDAC4-207ENST00000461113 ITSN1Q15811 1721 aa17.55■□□□□ 0.4
HDAC4-207ENST00000461113 SHANK3Q9BYB0 1731 aa17.55■□□□□ 0.4
HDAC4-207ENST00000461113 EVC2Q86UK5 1308 aa17.54■□□□□ 0.4
HDAC4-207ENST00000461113 WDR17Q8IZU2 1322 aa17.54■□□□□ 0.4
HDAC4-207ENST00000461113 EXOC5O00471 708 aa17.54■□□□□ 0.4
HDAC4-207ENST00000461113 NLGN2Q8NFZ4 835 aa17.54■□□□□ 0.4
HDAC4-207ENST00000461113 HSPA6P17066 643 aa17.53■□□□□ 0.4
HDAC4-207ENST00000461113 POLD1P28340 1107 aa17.53■□□□□ 0.4
HDAC4-207ENST00000461113 NLRP6P59044 892 aa17.53■□□□□ 0.4
HDAC4-207ENST00000461113 SRPK2P78362 688 aaKnown RBP17.53■□□□□ 0.4
HDAC4-207ENST00000461113 ACSBG1Q96GR2 724 aa17.53■□□□□ 0.4
HDAC4-207ENST00000461113 YBX3P16989 372 aaKnown RBP eCLIP17.51■□□□□ 0.39
HDAC4-207ENST00000461113 ATP10DQ9P241 1426 aa17.5■□□□□ 0.39
HDAC4-207ENST00000461113 ST20-MTHFSA0A0A6YYL1 179 aa17.5■□□□□ 0.39
HDAC4-207ENST00000461113 GRIN3BO60391 1043 aa17.5■□□□□ 0.39
HDAC4-207ENST00000461113 CSB-PGBD3P0DP91 1061 aa17.5■□□□□ 0.39
HDAC4-207ENST00000461113 ZEB1P37275 1124 aaPredicted RBP17.5■□□□□ 0.39
HDAC4-207ENST00000461113 EIF4G2P78344 907 aaKnown RBP eCLIP17.5■□□□□ 0.39
HDAC4-207ENST00000461113 CARD10Q9BWT7 1032 aa17.5■□□□□ 0.39
HDAC4-207ENST00000461113 USP47Q96K76 1375 aa17.5■□□□□ 0.39
HDAC4-207ENST00000461113 GOLGB1Q14789 3259 aaKnown RBP17.5■□□□□ 0.39
HDAC4-207ENST00000461113 SLC16A10Q8TF71 515 aa17.49■□□□□ 0.39
HDAC4-207ENST00000461113 LRRC4BQ9NT99 713 aa17.49■□□□□ 0.39
HDAC4-207ENST00000461113 GPBP1L1Q9HC44 474 aaPredicted RBP17.48■□□□□ 0.39
HDAC4-207ENST00000461113 TOPAZ1Q8N9V7 1692 aa17.48■□□□□ 0.39
HDAC4-207ENST00000461113 ARHGEF28Q8N1W1 1705 aaKnown RBP17.47■□□□□ 0.39
HDAC4-207ENST00000461113 CDCA8Q53HL2 280 aa17.47■□□□□ 0.39
HDAC4-207ENST00000461113 AKT1S1Q96B36 256 aa17.47■□□□□ 0.39
HDAC4-207ENST00000461113 PPIP5K1Q6PFW1 1433 aa17.47■□□□□ 0.39
HDAC4-207ENST00000461113 SBNO2Q9Y2G9 1366 aa17.46■□□□□ 0.39
HDAC4-207ENST00000461113 TMF1P82094 1093 aa17.46■□□□□ 0.39
HDAC4-207ENST00000461113 PAPPAQ13219 1627 aa17.46■□□□□ 0.39
HDAC4-207ENST00000461113 ARHGEF25Q86VW2 580 aa17.45■□□□□ 0.38
HDAC4-207ENST00000461113 ZNF526Q8TF50 670 aaPredicted RBP17.45■□□□□ 0.38
HDAC4-207ENST00000461113 CABP2Q9NPB3 220 aa17.45■□□□□ 0.38
HDAC4-207ENST00000461113 SLIT3O75094 1523 aa17.45■□□□□ 0.38
HDAC4-207ENST00000461113 PNPLA7Q6ZV29 1317 aa17.45■□□□□ 0.38
HDAC4-207ENST00000461113 BRD4O60885 1362 aaPredicted RBP17.44■□□□□ 0.38
HDAC4-207ENST00000461113 USP6P35125 1406 aa17.44■□□□□ 0.38
HDAC4-207ENST00000461113 CPSF1Q10570 1443 aaKnown RBP17.44■□□□□ 0.38
HDAC4-207ENST00000461113 AKAP12Q02952 1782 aa17.43■□□□□ 0.38
HDAC4-207ENST00000461113 SOX12O15370 315 aa17.43■□□□□ 0.38
HDAC4-207ENST00000461113 TNS2Q63HR2 1409 aa17.43■□□□□ 0.38
HDAC4-207ENST00000461113 TFCP2L1Q9NZI6 479 aa17.42■□□□□ 0.38
HDAC4-207ENST00000461113 CCDC7Q96M83 1385 aa17.41■□□□□ 0.38
HDAC4-207ENST00000461113 COL18A1P39060 1754 aa17.41■□□□□ 0.38
HDAC4-207ENST00000461113 PUS7Q96PZ0 661 aaKnown RBP17.41■□□□□ 0.38
HDAC4-207ENST00000461113 CABP1Q9NZU7 370 aa17.41■□□□□ 0.38
HDAC4-207ENST00000461113 WNK3Q9BYP7 1800 aa17.41■□□□□ 0.38
HDAC4-207ENST00000461113 NHSQ6T4R5 1651 aa17.4■□□□□ 0.38
HDAC4-207ENST00000461113 HSPA5P11021 654 aaKnown RBP17.4■□□□□ 0.38
HDAC4-207ENST00000461113 QRICH2Q9H0J4 1663 aa17.39■□□□□ 0.37
HDAC4-207ENST00000461113 SLC27A3Q5K4L6 730 aa17.39■□□□□ 0.37
HDAC4-207ENST00000461113 TMC1Q8TDI8 760 aa17.39■□□□□ 0.37
HDAC4-207ENST00000461113 TESK2Q96S53 571 aa17.39■□□□□ 0.37
HDAC4-207ENST00000461113 KCNQ4P56696 695 aa17.38■□□□□ 0.37
HDAC4-207ENST00000461113 KCNH5Q8NCM2 988 aa17.38■□□□□ 0.37
HDAC4-207ENST00000461113 ADCY9O60503 1353 aa17.37■□□□□ 0.37
HDAC4-207ENST00000461113 MSH5O43196 834 aa17.35■□□□□ 0.37
HDAC4-207ENST00000461113 IL2RBP14784 551 aa17.35■□□□□ 0.37
HDAC4-207ENST00000461113 HDGFL2Q7Z4V5 671 aaPredicted RBP17.35■□□□□ 0.37
HDAC4-207ENST00000461113 POLR3GLQ9BT43 218 aa17.35■□□□□ 0.37
HDAC4-207ENST00000461113 ZNF692Q9BU19 519 aaPredicted RBP17.35■□□□□ 0.37
HDAC4-207ENST00000461113 NLRP2Q9NX02 1062 aa17.35■□□□□ 0.37
HDAC4-207ENST00000461113 ABCC6O95255 1503 aa17.34■□□□□ 0.37
HDAC4-207ENST00000461113 TERF2IPQ9NYB0 399 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms