RNA–Protein interactions for RNA: ENST00000457942.1

CHCHD3-204, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 4

Gene CHCHD3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-204ENST00000457942 NLRP13Q86W25 1043 aa22.45■■□□□ 1.18
CHCHD3-204ENST00000457942 TONSLQ96HA7 1378 aa22.45■■□□□ 1.18
CHCHD3-204ENST00000457942 ZBTB7AO95365 584 aa22.44■■□□□ 1.18
CHCHD3-204ENST00000457942 USP6P35125 1406 aa22.44■■□□□ 1.18
CHCHD3-204ENST00000457942 BRD4O60885 1362 aaPredicted RBP22.43■■□□□ 1.18
CHCHD3-204ENST00000457942 BCL11BQ9C0K0 894 aaPredicted RBP22.43■■□□□ 1.18
CHCHD3-204ENST00000457942 AKAP12Q02952 1782 aa22.41■■□□□ 1.18
CHCHD3-204ENST00000457942 DDB1Q16531 1140 aa22.41■■□□□ 1.18
CHCHD3-204ENST00000457942 TOM1L2Q6ZVM7 507 aa22.41■■□□□ 1.18
CHCHD3-204ENST00000457942 CARD11Q9BXL7 1154 aa22.4■■□□□ 1.18
CHCHD3-204ENST00000457942 SLIT3O75094 1523 aa22.4■■□□□ 1.18
CHCHD3-204ENST00000457942 PIK3C2AO00443 1686 aa22.39■■□□□ 1.18
CHCHD3-204ENST00000457942 NLRP6P59044 892 aa22.39■■□□□ 1.17
CHCHD3-204ENST00000457942 ATF5Q9Y2D1 282 aaPredicted RBP22.39■■□□□ 1.17
CHCHD3-204ENST00000457942 SOX12O15370 315 aa22.37■■□□□ 1.17
CHCHD3-204ENST00000457942 UTRNP46939 3433 aa22.37■■□□□ 1.17
CHCHD3-204ENST00000457942 TRIM26Q12899 539 aaPredicted RBP22.36■■□□□ 1.17
CHCHD3-204ENST00000457942 AATKQ6ZMQ8 1374 aa22.36■■□□□ 1.17
CHCHD3-204ENST00000457942 COL18A1P39060 1754 aa22.35■■□□□ 1.17
CHCHD3-204ENST00000457942 PLSCR1O15162 318 aa22.35■■□□□ 1.17
CHCHD3-204ENST00000457942 MARCH10Q8NA82 808 aaPredicted RBP22.35■■□□□ 1.17
CHCHD3-204ENST00000457942 C11orf95C9JLR9 678 aaPredicted RBP22.34■■□□□ 1.17
CHCHD3-204ENST00000457942 CPSF1Q10570 1443 aaKnown RBP22.33■■□□□ 1.17
CHCHD3-204ENST00000457942 RGPD5Q99666 1765 aa22.33■■□□□ 1.17
CHCHD3-204ENST00000457942 PTGER2P43116 358 aa22.33■■□□□ 1.17
CHCHD3-204ENST00000457942 PROM2Q8N271 834 aa22.33■■□□□ 1.17
CHCHD3-204ENST00000457942 ZNF784Q8NCA9 323 aaPredicted RBP22.33■■□□□ 1.17
CHCHD3-204ENST00000457942 ZNF692Q9BU19 519 aaPredicted RBP22.33■■□□□ 1.17
CHCHD3-204ENST00000457942 AXIN2Q9Y2T1 843 aa22.33■■□□□ 1.17
CHCHD3-204ENST00000457942 STK32BQ9NY57 414 aa22.32■■□□□ 1.16
CHCHD3-204ENST00000457942 TTC21BQ7Z4L5 1316 aa22.31■■□□□ 1.16
CHCHD3-204ENST00000457942 WDR17Q8IZU2 1322 aa22.31■■□□□ 1.16
CHCHD3-204ENST00000457942 KTN1Q86UP2 1357 aaKnown RBP22.31■■□□□ 1.16
CHCHD3-204ENST00000457942 SBNO2Q9Y2G9 1366 aa22.31■■□□□ 1.16
CHCHD3-204ENST00000457942 CSB-PGBD3P0DP91 1061 aa22.31■■□□□ 1.16
CHCHD3-204ENST00000457942 FHDC1Q9C0D6 1143 aaPredicted RBP22.31■■□□□ 1.16
CHCHD3-204ENST00000457942 TXNRD1Q16881 649 aa22.3■■□□□ 1.16
CHCHD3-204ENST00000457942 MON2Q7Z3U7 1717 aa22.3■■□□□ 1.16
CHCHD3-204ENST00000457942 TTC21AQ8NDW8 1320 aa22.29■■□□□ 1.16
CHCHD3-204ENST00000457942 TMC1Q8TDI8 760 aa22.28■■□□□ 1.16
CHCHD3-204ENST00000457942 SENP3-EIF4A1A0A087X0R7 540 aa22.27■■□□□ 1.16
CHCHD3-204ENST00000457942 SLC15A2Q16348 729 aa22.26■■□□□ 1.15
CHCHD3-204ENST00000457942 KCNH5Q8NCM2 988 aa22.26■■□□□ 1.15
CHCHD3-204ENST00000457942 NHSQ6T4R5 1651 aa22.26■■□□□ 1.15
CHCHD3-204ENST00000457942 TNS2Q63HR2 1409 aa22.25■■□□□ 1.15
CHCHD3-204ENST00000457942 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.25■■□□□ 1.159e-7■■■■□ 19.7
CHCHD3-204ENST00000457942 ACSBG1Q96GR2 724 aa22.25■■□□□ 1.15
CHCHD3-204ENST00000457942 SYT17Q9BSW7 474 aa22.25■■□□□ 1.15
CHCHD3-204ENST00000457942 HDGFL2Q7Z4V5 671 aaPredicted RBP22.23■■□□□ 1.15
CHCHD3-204ENST00000457942 BCL9O00512 1426 aa22.23■■□□□ 1.15
CHCHD3-204ENST00000457942 CDCA7Q9BWT1 371 aaPredicted RBP22.22■■□□□ 1.15
CHCHD3-204ENST00000457942 MTFR1LQ9H019 292 aa22.22■■□□□ 1.15
CHCHD3-204ENST00000457942 NFAT5O94916 1531 aa22.21■■□□□ 1.15
CHCHD3-204ENST00000457942 PAPPAQ13219 1627 aa22.21■■□□□ 1.15
CHCHD3-204ENST00000457942 ARHGEF25Q86VW2 580 aa22.21■■□□□ 1.15
CHCHD3-204ENST00000457942 CARD10Q9BWT7 1032 aa22.21■■□□□ 1.15
CHCHD3-204ENST00000457942 EXOC5O00471 708 aa22.2■■□□□ 1.14
CHCHD3-204ENST00000457942 KLHL34Q8N239 644 aa22.2■■□□□ 1.14
CHCHD3-204ENST00000457942 ABCC6O95255 1503 aa22.18■■□□□ 1.14
CHCHD3-204ENST00000457942 CD163L1Q9NR16 1453 aa22.18■■□□□ 1.14
CHCHD3-204ENST00000457942 SGIP1Q9BQI5 828 aa22.18■■□□□ 1.14
CHCHD3-204ENST00000457942 SLC12A5Q9H2X9 1139 aa22.18■■□□□ 1.14
CHCHD3-204ENST00000457942 TERF2IPQ9NYB0 399 aa22.18■■□□□ 1.14
CHCHD3-204ENST00000457942 CHD4Q14839 1912 aa22.18■■□□□ 1.14
CHCHD3-204ENST00000457942 BTAF1O14981 1849 aa22.17■■□□□ 1.14
CHCHD3-204ENST00000457942 CCDC7Q96M83 1385 aa22.17■■□□□ 1.14
CHCHD3-204ENST00000457942 NME9Q86XW9 330 aa22.17■■□□□ 1.14
CHCHD3-204ENST00000457942 ARXQ96QS3 562 aa22.17■■□□□ 1.14
CHCHD3-204ENST00000457942 ST20-MTHFSA0A0A6YYL1 179 aa22.16■■□□□ 1.14
CHCHD3-204ENST00000457942 ZNF827Q17R98 1081 aa22.16■■□□□ 1.14
CHCHD3-204ENST00000457942 LTN1O94822 1766 aa22.16■■□□□ 1.14
CHCHD3-204ENST00000457942 USP54Q70EL1 1684 aa22.16■■□□□ 1.14
CHCHD3-204ENST00000457942 EDC4Q6P2E9 1401 aaKnown RBP22.15■■□□□ 1.14
CHCHD3-204ENST00000457942 A0A1W2PP64 1363 aa22.15■■□□□ 1.14
CHCHD3-204ENST00000457942 C1QTNF8P60827 252 aa22.15■■□□□ 1.14
CHCHD3-204ENST00000457942 PELP1Q8IZL8 1130 aaKnown RBP22.15■■□□□ 1.14
CHCHD3-204ENST00000457942 USP31Q70CQ4 1352 aa22.13■■□□□ 1.13
CHCHD3-204ENST00000457942 NLRP2Q9NX02 1062 aa22.13■■□□□ 1.13
CHCHD3-204ENST00000457942 GOLGB1Q14789 3259 aaKnown RBP22.13■■□□□ 1.13
CHCHD3-204ENST00000457942 GPR162Q16538 588 aa22.12■■□□□ 1.13
CHCHD3-204ENST00000457942 SLC24A1O60721 1099 aa22.11■■□□□ 1.13
CHCHD3-204ENST00000457942 PUS7Q96PZ0 661 aaKnown RBP22.11■■□□□ 1.13
CHCHD3-204ENST00000457942 TESK2Q96S53 571 aa22.11■■□□□ 1.13
CHCHD3-204ENST00000457942 USP47Q96K76 1375 aa22.1■■□□□ 1.13
CHCHD3-204ENST00000457942 ERBB3P21860 1342 aa22.08■■□□□ 1.13
CHCHD3-204ENST00000457942 LRRC4BQ9NT99 713 aa22.08■■□□□ 1.13
CHCHD3-204ENST00000457942 IL2RBP14784 551 aa22.07■■□□□ 1.12
CHCHD3-204ENST00000457942 PCGF6Q9BYE7 350 aa22.07■■□□□ 1.12
CHCHD3-204ENST00000457942 MAP3K5Q99683 1374 aa22.07■■□□□ 1.12
CHCHD3-204ENST00000457942 TUBGCP6Q96RT7 1819 aa22.06■■□□□ 1.12
CHCHD3-204ENST00000457942 GIGYF1O75420 1035 aaPredicted RBP22.05■■□□□ 1.12
CHCHD3-204ENST00000457942 KCNQ4P56696 695 aa22.05■■□□□ 1.12
CHCHD3-204ENST00000457942 TMF1P82094 1093 aa22.05■■□□□ 1.12
CHCHD3-204ENST00000457942 ANKRD24Q8TF21 1146 aa22.04■■□□□ 1.12
CHCHD3-204ENST00000457942 SHANK3Q9BYB0 1731 aa22.03■■□□□ 1.12
CHCHD3-204ENST00000457942 NLGN2Q8NFZ4 835 aa22.03■■□□□ 1.12
CHCHD3-204ENST00000457942 COG3Q96JB2 828 aa22.03■■□□□ 1.12
CHCHD3-204ENST00000457942 CEP350Q5VT06 3117 aa22.02■■□□□ 1.12
CHCHD3-204ENST00000457942 DOT1LQ8TEK3 1739 aa22.02■■□□□ 1.12
CHCHD3-204ENST00000457942 ANKRD36BQ8N2N9 1353 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms