RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 CEP170BQ9Y4F5 1589 aaPredicted RBP17.49■□□□□ 0.39
CLK3-203ENST00000454830 ANKRD26Q9UPS8 1709 aa17.49■□□□□ 0.39
CLK3-203ENST00000454830 LMOD3Q0VAK6 560 aa17.49■□□□□ 0.39
CLK3-203ENST00000454830 DZIP1LQ8IYY4 767 aaKnown RBP17.49■□□□□ 0.39
CLK3-203ENST00000454830 PHF8Q9UPP1 1060 aa17.49■□□□□ 0.39
CLK3-203ENST00000454830 PDE4AP27815 886 aa17.49■□□□□ 0.39
CLK3-203ENST00000454830 MAP3K19Q56UN5 1328 aa17.48■□□□□ 0.39
CLK3-203ENST00000454830 NOB1Q9ULX3 412 aaKnown RBP17.48■□□□□ 0.39
CLK3-203ENST00000454830 LRRC7Q96NW7 1537 aa17.47■□□□□ 0.39
CLK3-203ENST00000454830 TTC21AQ8NDW8 1320 aa17.47■□□□□ 0.39
CLK3-203ENST00000454830 GNAI1P63096 354 aa17.47■□□□□ 0.39
CLK3-203ENST00000454830 PROSER2Q86WR7 435 aaPredicted RBP17.47■□□□□ 0.39
CLK3-203ENST00000454830 ITSN1Q15811 1721 aa17.47■□□□□ 0.39
CLK3-203ENST00000454830 BCL11AQ9H165 835 aa17.46■□□□□ 0.39
CLK3-203ENST00000454830 IL16Q14005 1332 aa17.46■□□□□ 0.39
CLK3-203ENST00000454830 PTCH1Q13635 1447 aa17.46■□□□□ 0.39
CLK3-203ENST00000454830 CDK12Q9NYV4 1490 aaPredicted RBP17.46■□□□□ 0.38
CLK3-203ENST00000454830 MCM10Q7L590 875 aa17.45■□□□□ 0.38
CLK3-203ENST00000454830 IGHDP01880 384 aa17.45■□□□□ 0.38
CLK3-203ENST00000454830 MS4A1P11836 297 aa17.45■□□□□ 0.38
CLK3-203ENST00000454830 NCBP3Q53F19 620 aaKnown RBP17.44■□□□□ 0.38
CLK3-203ENST00000454830 IPO8O15397 1037 aaKnown RBP17.44■□□□□ 0.38
CLK3-203ENST00000454830 FOXO3O43524 673 aa17.44■□□□□ 0.38
CLK3-203ENST00000454830 CT47B1P0C2W7 299 aaPredicted RBP17.44■□□□□ 0.38
CLK3-203ENST00000454830 RTF1Q92541 710 aaKnown RBP17.44■□□□□ 0.38
CLK3-203ENST00000454830 TRIM27P14373 513 aa17.43■□□□□ 0.38
CLK3-203ENST00000454830 MBIPQ9NS73 344 aa17.43■□□□□ 0.38
CLK3-203ENST00000454830 DIP2AQ14689 1571 aa17.43■□□□□ 0.38
CLK3-203ENST00000454830 ATF7IPQ6VMQ6 1270 aa17.42■□□□□ 0.38
CLK3-203ENST00000454830 TSPYL6Q8N831 410 aa17.42■□□□□ 0.38
CLK3-203ENST00000454830 KDM2BQ8NHM5 1336 aa17.42■□□□□ 0.38
CLK3-203ENST00000454830 MVPQ14764 893 aaKnown RBP17.42■□□□□ 0.38
CLK3-203ENST00000454830 ADGRB2O60241 1585 aa17.41■□□□□ 0.38
CLK3-203ENST00000454830 TWISTNBQ3B726 338 aaPredicted RBP17.41■□□□□ 0.38
CLK3-203ENST00000454830 MSH5O43196 834 aa17.41■□□□□ 0.38
CLK3-203ENST00000454830 ORAI2Q96SN7 254 aa17.4■□□□□ 0.38
CLK3-203ENST00000454830 IFT57Q9NWB7 429 aa17.4■□□□□ 0.38
CLK3-203ENST00000454830 KIF16BQ96L93 1317 aa17.4■□□□□ 0.38
CLK3-203ENST00000454830 PIK3R4Q99570 1358 aa17.4■□□□□ 0.38
CLK3-203ENST00000454830 MIS18AQ9NYP9 233 aa17.4■□□□□ 0.38
CLK3-203ENST00000454830 PCDHB15Q9Y5E8 787 aa17.4■□□□□ 0.38
CLK3-203ENST00000454830 OVOS2A0A0J9YW53 1432 aa17.4■□□□□ 0.38
CLK3-203ENST00000454830 OVOS2Q6IE36 1432 aa17.4■□□□□ 0.38
CLK3-203ENST00000454830 MON2Q7Z3U7 1717 aa17.4■□□□□ 0.38
CLK3-203ENST00000454830 USHBP1Q8N6Y0 703 aa17.4■□□□□ 0.38
CLK3-203ENST00000454830 TMEM57Q8N5G2 664 aa17.39■□□□□ 0.37
CLK3-203ENST00000454830 RWDD1Q9H446 243 aaPredicted RBP17.39■□□□□ 0.37
CLK3-203ENST00000454830 FLT4P35916 1363 aa17.39■□□□□ 0.37
CLK3-203ENST00000454830 EYA1Q99502 592 aa17.39■□□□□ 0.37
CLK3-203ENST00000454830 SETD1BQ9UPS6 1966 aaKnown RBP17.39■□□□□ 0.37
CLK3-203ENST00000454830 NPHP4O75161 1426 aaPredicted RBP17.39■□□□□ 0.37
CLK3-203ENST00000454830 CFAP44Q96MT7 982 aa17.38■□□□□ 0.37
CLK3-203ENST00000454830 BACH2Q9BYV9 841 aa17.38■□□□□ 0.37
CLK3-203ENST00000454830 HSPA2P54652 639 aa17.38■□□□□ 0.37
CLK3-203ENST00000454830 C8orf58Q8NAV2 365 aa17.38■□□□□ 0.37
CLK3-203ENST00000454830 DDX19BQ9UMR2 479 aa17.37■□□□□ 0.37
CLK3-203ENST00000454830 AKAP12Q02952 1782 aa17.37■□□□□ 0.37
CLK3-203ENST00000454830 KRT24Q2M2I5 525 aa17.37■□□□□ 0.37
CLK3-203ENST00000454830 RGPD8O14715 1765 aaPredicted RBP17.37■□□□□ 0.37
CLK3-203ENST00000454830 VAMP4O75379 141 aa17.36■□□□□ 0.37
CLK3-203ENST00000454830 SBNO1A3KN83 1393 aa17.36■□□□□ 0.37
CLK3-203ENST00000454830 MTHFSDQ2M296 383 aaKnown RBP17.35■□□□□ 0.37
CLK3-203ENST00000454830 ZBTB47Q9UFB7 747 aaPredicted RBP17.35■□□□□ 0.37
CLK3-203ENST00000454830 HOXC9P31274 260 aa17.35■□□□□ 0.37
CLK3-203ENST00000454830 ALDH1L2Q3SY69 923 aa17.34■□□□□ 0.37
CLK3-203ENST00000454830 ANKARQ7Z5J8 1434 aa17.34■□□□□ 0.37
CLK3-203ENST00000454830 TSPYL4Q9UJ04 414 aa17.34■□□□□ 0.37
CLK3-203ENST00000454830 USP31Q70CQ4 1352 aa17.34■□□□□ 0.37
CLK3-203ENST00000454830 ATF3P18847 181 aa17.33■□□□□ 0.37
CLK3-203ENST00000454830 ANP32EQ9BTT0 268 aa17.33■□□□□ 0.36
CLK3-203ENST00000454830 FAM161AQ3B820 660 aa17.32■□□□□ 0.36
CLK3-203ENST00000454830 C1orf115Q9H7X2 142 aa17.32■□□□□ 0.36
CLK3-203ENST00000454830 GAS2L2Q8NHY3 880 aa17.32■□□□□ 0.36
CLK3-203ENST00000454830 NECTIN2Q92692 538 aa17.32■□□□□ 0.36
CLK3-203ENST00000454830 PDZRN3Q9UPQ7 1066 aa17.32■□□□□ 0.36
CLK3-203ENST00000454830 NOP58Q9Y2X3 529 aaKnown RBP17.32■□□□□ 0.36
CLK3-203ENST00000454830 SSH2Q76I76 1423 aa17.32■□□□□ 0.36
CLK3-203ENST00000454830 DAXXQ9UER7 740 aaPredicted RBP17.31■□□□□ 0.36
CLK3-203ENST00000454830 AAMPQ13685 434 aa17.31■□□□□ 0.36
CLK3-203ENST00000454830 IPO9Q96P70 1041 aaKnown RBP17.31■□□□□ 0.36
CLK3-203ENST00000454830 MRPL50Q8N5N7 158 aaKnown RBP17.3■□□□□ 0.36
CLK3-203ENST00000454830 ZNF428Q96B54 188 aa17.3■□□□□ 0.36
CLK3-203ENST00000454830 XRN1Q8IZH2 1706 aaKnown RBP17.3■□□□□ 0.36
CLK3-203ENST00000454830 ZNF853P0CG23 659 aa17.29■□□□□ 0.36
CLK3-203ENST00000454830 KRT28Q7Z3Y7 464 aa17.29■□□□□ 0.36
CLK3-203ENST00000454830 TOPAZ1Q8N9V7 1692 aa17.29■□□□□ 0.36
CLK3-203ENST00000454830 ADGRL3Q9HAR2 1447 aa17.29■□□□□ 0.36
CLK3-203ENST00000454830 DDX17Q92841 729 aaKnown RBP17.29■□□□□ 0.36
CLK3-203ENST00000454830 ZC3H6P61129 1189 aaKnown RBP17.28■□□□□ 0.36
CLK3-203ENST00000454830 HAP1P54257 671 aaPredicted RBP17.28■□□□□ 0.36
CLK3-203ENST00000454830 LRRC59Q96AG4 307 aaKnown RBP17.28■□□□□ 0.36
CLK3-203ENST00000454830 ARHGEF10O15013 1369 aa17.28■□□□□ 0.36
CLK3-203ENST00000454830 KCNH5Q8NCM2 988 aa17.27■□□□□ 0.36
CLK3-203ENST00000454830 C19orf44Q9H6X5 657 aa17.27■□□□□ 0.36
CLK3-203ENST00000454830 ADAMTSL3P82987 1691 aa17.27■□□□□ 0.36
CLK3-203ENST00000454830 SLC4A10Q6U841 1118 aa17.27■□□□□ 0.35
CLK3-203ENST00000454830 API5Q9BZZ5 524 aaKnown RBP17.27■□□□□ 0.35
CLK3-203ENST00000454830 GNAT3A8MTJ3 354 aa17.26■□□□□ 0.35
CLK3-203ENST00000454830 IGSF1Q8N6C5 1336 aa17.26■□□□□ 0.35
CLK3-203ENST00000454830 GCP02774 474 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms