RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 THSD7AQ9UPZ6 1657 aa17.77■□□□□ 0.43
PRPF40A-203ENST00000448428 BARGINQ6ZT62 677 aa17.75■□□□□ 0.43
PRPF40A-203ENST00000448428 TCP11L2Q8N4U5 519 aa17.75■□□□□ 0.43
PRPF40A-203ENST00000448428 MYOM1P52179 1685 aa17.74■□□□□ 0.43
PRPF40A-203ENST00000448428 LTN1O94822 1766 aa17.74■□□□□ 0.43
PRPF40A-203ENST00000448428 CCDC125Q86Z20 511 aa17.74■□□□□ 0.43
PRPF40A-203ENST00000448428 OVOS2A0A0J9YW53 1432 aa17.73■□□□□ 0.43
PRPF40A-203ENST00000448428 CRB1P82279 1406 aa17.73■□□□□ 0.43
PRPF40A-203ENST00000448428 OVOS2Q6IE36 1432 aa17.73■□□□□ 0.43
PRPF40A-203ENST00000448428 THRAP3Q9Y2W1 955 aaKnown RBP17.73■□□□□ 0.43
PRPF40A-203ENST00000448428 FYB1O15117 783 aa17.72■□□□□ 0.43
PRPF40A-203ENST00000448428 FAM182BQ5T319 152 aa17.72■□□□□ 0.43
PRPF40A-203ENST00000448428 TOM1L2Q6ZVM7 507 aa17.72■□□□□ 0.43
PRPF40A-203ENST00000448428 COG3Q96JB2 828 aa17.72■□□□□ 0.43
PRPF40A-203ENST00000448428 CARD14Q9BXL6 1004 aa17.72■□□□□ 0.43
PRPF40A-203ENST00000448428 WDR17Q8IZU2 1322 aa17.72■□□□□ 0.43
PRPF40A-203ENST00000448428 POLR3GLQ9BT43 218 aa17.71■□□□□ 0.43
PRPF40A-203ENST00000448428 FBLN1P23142 703 aa17.7■□□□□ 0.42
PRPF40A-203ENST00000448428 ABCC6O95255 1503 aa17.69■□□□□ 0.42
PRPF40A-203ENST00000448428 CSB-PGBD3P0DP91 1061 aa17.69■□□□□ 0.42
PRPF40A-203ENST00000448428 GGNBP2Q9H3C7 697 aa17.69■□□□□ 0.42
PRPF40A-203ENST00000448428 BLMP54132 1417 aaPredicted RBP17.69■□□□□ 0.42
PRPF40A-203ENST00000448428 EP400Q96L91 3159 aa17.69■□□□□ 0.42
PRPF40A-203ENST00000448428 C11orf95C9JLR9 678 aaPredicted RBP17.68■□□□□ 0.42
PRPF40A-203ENST00000448428 KIF20BQ96Q89 1820 aa17.68■□□□□ 0.42
PRPF40A-203ENST00000448428 PDE3BQ13370 1112 aa17.67■□□□□ 0.42
PRPF40A-203ENST00000448428 CARD10Q9BWT7 1032 aa17.67■□□□□ 0.42
PRPF40A-203ENST00000448428 PARP4Q9UKK3 1724 aaKnown RBP17.67■□□□□ 0.42
PRPF40A-203ENST00000448428 IP6K1Q92551 441 aa17.66■□□□□ 0.42
PRPF40A-203ENST00000448428 NSD3Q9BZ95 1437 aa17.64■□□□□ 0.42
PRPF40A-203ENST00000448428 WNK3Q9BYP7 1800 aa17.64■□□□□ 0.41
PRPF40A-203ENST00000448428 SF3B2Q13435 895 aaKnown RBP17.64■□□□□ 0.41
PRPF40A-203ENST00000448428 FAM196AQ6ZSG2 479 aa17.64■□□□□ 0.41
PRPF40A-203ENST00000448428 ANKRD24Q8TF21 1146 aa17.64■□□□□ 0.41
PRPF40A-203ENST00000448428 ERBB3P21860 1342 aa17.64■□□□□ 0.41
PRPF40A-203ENST00000448428 MAP3K19Q56UN5 1328 aa17.64■□□□□ 0.41
PRPF40A-203ENST00000448428 DEFB132Q7Z7B7 95 aa17.63■□□□□ 0.41
PRPF40A-203ENST00000448428 NLRP2Q9NX02 1062 aa17.63■□□□□ 0.41
PRPF40A-203ENST00000448428 AMPHP49418 695 aa17.62■□□□□ 0.41
PRPF40A-203ENST00000448428 RRS1Q15050 365 aaKnown RBP17.62■□□□□ 0.41
PRPF40A-203ENST00000448428 DDB1Q16531 1140 aa17.62■□□□□ 0.41
PRPF40A-203ENST00000448428 CDCA7Q9BWT1 371 aaPredicted RBP17.62■□□□□ 0.41
PRPF40A-203ENST00000448428 HOXC9P31274 260 aa17.61■□□□□ 0.41
PRPF40A-203ENST00000448428 PANK3Q9H999 370 aa17.61■□□□□ 0.41
PRPF40A-203ENST00000448428 CCDC7Q96M83 1385 aa17.61■□□□□ 0.41
PRPF40A-203ENST00000448428 LRRC37A3O60309 1634 aa17.61■□□□□ 0.41
PRPF40A-203ENST00000448428 RGPD1P0DJD0 1748 aa17.61■□□□□ 0.41
PRPF40A-203ENST00000448428 TRIM37O94972 964 aa17.6■□□□□ 0.41
PRPF40A-203ENST00000448428 LTV1Q96GA3 475 aaPredicted RBP17.6■□□□□ 0.41
PRPF40A-203ENST00000448428 CGNL1Q0VF96 1302 aa17.6■□□□□ 0.41
PRPF40A-203ENST00000448428 DISP2A7MBM2 1401 aa17.6■□□□□ 0.41
PRPF40A-203ENST00000448428 RGPD2P0DJD1 1756 aa17.58■□□□□ 0.41
PRPF40A-203ENST00000448428 BAG6P46379 1132 aa17.58■□□□□ 0.4
PRPF40A-203ENST00000448428 TNS1Q9HBL0 1735 aaKnown RBP17.58■□□□□ 0.4
PRPF40A-203ENST00000448428 EXOC5O00471 708 aa17.57■□□□□ 0.4
PRPF40A-203ENST00000448428 MARCH10Q8NA82 808 aaPredicted RBP17.57■□□□□ 0.4
PRPF40A-203ENST00000448428 PEAK1Q9H792 1746 aa17.57■□□□□ 0.4
PRPF40A-203ENST00000448428 MAP2P11137 1827 aaKnown RBP17.56■□□□□ 0.4
PRPF40A-203ENST00000448428 KIF7Q2M1P5 1343 aa17.56■□□□□ 0.4
PRPF40A-203ENST00000448428 FAM208AQ9UK61 1670 aaKnown RBP17.56■□□□□ 0.4
PRPF40A-203ENST00000448428 EN1Q05925 392 aaPredicted RBP17.56■□□□□ 0.4
PRPF40A-203ENST00000448428 SBF2Q86WG5 1849 aa17.56■□□□□ 0.4
PRPF40A-203ENST00000448428 RTL1A6NKG5 1358 aa17.55■□□□□ 0.4
PRPF40A-203ENST00000448428 IL2RBP14784 551 aa17.55■□□□□ 0.4
PRPF40A-203ENST00000448428 HSP90AB2PQ58FF8 381 aa17.54■□□□□ 0.4
PRPF40A-203ENST00000448428 EMILIN1Q9Y6C2 1016 aa17.54■□□□□ 0.4
PRPF40A-203ENST00000448428 OVOS2A0A0G2JMS6 1433 aa17.54■□□□□ 0.4
PRPF40A-203ENST00000448428 ANKRD26Q9UPS8 1709 aa17.53■□□□□ 0.4
PRPF40A-203ENST00000448428 APBA3O96018 575 aa17.53■□□□□ 0.4
PRPF40A-203ENST00000448428 INSRP06213 1382 aa17.52■□□□□ 0.39
PRPF40A-203ENST00000448428 FLT4P35916 1363 aa17.52■□□□□ 0.39
PRPF40A-203ENST00000448428 KIF24Q5T7B8 1368 aa17.52■□□□□ 0.39
PRPF40A-203ENST00000448428 EZH2Q15910 746 aaKnown RBP17.51■□□□□ 0.39
PRPF40A-203ENST00000448428 NBPF6Q5VWK0 638 aa17.51■□□□□ 0.39
PRPF40A-203ENST00000448428 NBPF4Q96M43 638 aa17.51■□□□□ 0.39
PRPF40A-203ENST00000448428 CAMKK2Q96RR4 588 aa17.51■□□□□ 0.39
PRPF40A-203ENST00000448428 TNS2Q63HR2 1409 aa17.5■□□□□ 0.39
PRPF40A-203ENST00000448428 PPM1GO15355 546 aaPredicted RBP17.5■□□□□ 0.39
PRPF40A-203ENST00000448428 TNNT2P45379 298 aaPredicted RBP17.5■□□□□ 0.39
PRPF40A-203ENST00000448428 POLKQ9UBT6 870 aa17.5■□□□□ 0.39
PRPF40A-203ENST00000448428 KNSTRNQ9Y448 316 aa17.5■□□□□ 0.39
PRPF40A-203ENST00000448428 BCL9O00512 1426 aa17.49■□□□□ 0.39
PRPF40A-203ENST00000448428 PTF1AQ7RTS3 328 aa17.49■□□□□ 0.39
PRPF40A-203ENST00000448428 USHBP1Q8N6Y0 703 aa17.48■□□□□ 0.39
PRPF40A-203ENST00000448428 BCL11BQ9C0K0 894 aaPredicted RBP17.48■□□□□ 0.39
PRPF40A-203ENST00000448428 WASHC2AQ641Q2 1341 aa17.47■□□□□ 0.39
PRPF40A-203ENST00000448428 SMG6Q86US8 1419 aaKnown RBP17.47■□□□□ 0.39
PRPF40A-203ENST00000448428 NSD2O96028 1365 aa17.47■□□□□ 0.39
PRPF40A-203ENST00000448428 KAT6BQ8WYB5 2073 aa17.46■□□□□ 0.39
PRPF40A-203ENST00000448428 DDX54Q8TDD1 881 aaKnown RBP17.46■□□□□ 0.39
PRPF40A-203ENST00000448428 PER1O15534 1290 aaPredicted RBP17.45■□□□□ 0.38
PRPF40A-203ENST00000448428 MORC1Q86VD1 984 aa17.45■□□□□ 0.38
PRPF40A-203ENST00000448428 MEGF6O75095 1541 aa17.44■□□□□ 0.38
PRPF40A-203ENST00000448428 KCNQ2O43526 872 aa17.44■□□□□ 0.38
PRPF40A-203ENST00000448428 AMER1Q5JTC6 1135 aaPredicted RBP17.44■□□□□ 0.38
PRPF40A-203ENST00000448428 ZCRB1Q8TBF4 217 aaKnown RBP17.44■□□□□ 0.38
PRPF40A-203ENST00000448428 PARD3Q8TEW0 1356 aa17.43■□□□□ 0.38
PRPF40A-203ENST00000448428 RREB1Q92766 1687 aa17.43■□□□□ 0.38
PRPF40A-203ENST00000448428 PLSCR1O15162 318 aa17.43■□□□□ 0.38
PRPF40A-203ENST00000448428 ACSBG1Q96GR2 724 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms