RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 KCTD15Q96SI1 283 aaPredicted RBP7.29□□□□□ -1.24
VPS41-207ENST00000439468 ZFAND3Q9H8U3 227 aa7.29□□□□□ -1.24
VPS41-207ENST00000439468 CDV3Q9UKY7 258 aaKnown RBP7.29□□□□□ -1.24
VPS41-207ENST00000439468 NDUFB9Q9Y6M9 179 aa7.29□□□□□ -1.24
VPS41-207ENST00000439468 ITPKCQ96DU7 683 aa7.28□□□□□ -1.24
VPS41-207ENST00000439468 OCSTAMPQ9BR26 566 aa7.28□□□□□ -1.24
VPS41-207ENST00000439468 ZBBXA8MT70 800 aa7.27□□□□□ -1.25
VPS41-207ENST00000439468 SCARF1Q14162 830 aa7.27□□□□□ -1.25
VPS41-207ENST00000439468 NBPF20Q3BBV1 942 aa7.27□□□□□ -1.25
VPS41-207ENST00000439468 KIFC2Q96AC6 838 aa7.27□□□□□ -1.25
VPS41-207ENST00000439468 PRM3Q9NNZ6 103 aa7.27□□□□□ -1.25
VPS41-207ENST00000439468 PCDHB9Q9Y5E1 797 aa7.27□□□□□ -1.25
VPS41-207ENST00000439468 UPP2O95045 317 aa7.26□□□□□ -1.25
VPS41-207ENST00000439468 SNRPBP14678 240 aaKnown RBP7.26□□□□□ -1.25
VPS41-207ENST00000439468 C6orf118Q5T5N4 469 aa7.26□□□□□ -1.25
VPS41-207ENST00000439468 MRPL14Q6P1L8 145 aaKnown RBP7.26□□□□□ -1.25
VPS41-207ENST00000439468 TRIM46Q7Z4K8 759 aa7.26□□□□□ -1.25
VPS41-207ENST00000439468 TRIM47Q96LD4 638 aa7.26□□□□□ -1.25
VPS41-207ENST00000439468 PURBQ96QR8 312 aaKnown RBP7.26□□□□□ -1.25
VPS41-207ENST00000439468 PGPEP1Q9NXJ5 209 aa7.26□□□□□ -1.25
VPS41-207ENST00000439468 EMILIN1Q9Y6C2 1016 aa7.26□□□□□ -1.25
VPS41-207ENST00000439468 FBXO45P0C2W1 286 aa7.25□□□□□ -1.25
VPS41-207ENST00000439468 DHX9Q08211 1270 aaKnown RBP7.25□□□□□ -1.25
VPS41-207ENST00000439468 PPP1R26Q5T8A7 1209 aaPredicted RBP7.25□□□□□ -1.25
VPS41-207ENST00000439468 INTS6LQ5JSJ4 861 aaKnown RBP7.24□□□□□ -1.25
VPS41-207ENST00000439468 ZNF775Q96BV0 537 aaPredicted RBP7.24□□□□□ -1.25
VPS41-207ENST00000439468 ZFP42Q96MM3 310 aa7.24□□□□□ -1.25
VPS41-207ENST00000439468 KLF16Q9BXK1 252 aaPredicted RBP7.24□□□□□ -1.25
VPS41-207ENST00000439468 ZNF330Q9Y3S2 320 aaPredicted RBP7.24□□□□□ -1.25
VPS41-207ENST00000439468 SOCS7O14512 581 aa7.23□□□□□ -1.25
VPS41-207ENST00000439468 BMP2P12643 396 aa7.23□□□□□ -1.25
VPS41-207ENST00000439468 TBC1D2BQ9UPU7 963 aa7.23□□□□□ -1.25
VPS41-207ENST00000439468 NR1H3Q13133 447 aa7.22□□□□□ -1.25
VPS41-207ENST00000439468 C14orf37Q86TY3 774 aa7.22□□□□□ -1.25
VPS41-207ENST00000439468 LINC00528Q8N1L1 170 aa7.22□□□□□ -1.25
VPS41-207ENST00000439468 MEIOBQ8N635 442 aa7.22□□□□□ -1.25
VPS41-207ENST00000439468 ABL2P42684 1182 aa7.21□□□□□ -1.26
VPS41-207ENST00000439468 CBLBQ13191 982 aa7.21□□□□□ -1.26
VPS41-207ENST00000439468 TMPRSS4Q9NRS4 437 aa7.21□□□□□ -1.26
VPS41-207ENST00000439468 ERVH48-1M5A8F1 160 aa7.19□□□□□ -1.26
VPS41-207ENST00000439468 GIGYF1O75420 1035 aaPredicted RBP7.19□□□□□ -1.26
VPS41-207ENST00000439468 ZNF784Q8NCA9 323 aaPredicted RBP7.19□□□□□ -1.26
VPS41-207ENST00000439468 ZNF592Q92610 1267 aa7.19□□□□□ -1.26
VPS41-207ENST00000439468 TSEN34Q9BSV6 310 aaKnown RBP7.19□□□□□ -1.26
VPS41-207ENST00000439468 GDPD2Q9HCC8 539 aa7.19□□□□□ -1.26
VPS41-207ENST00000439468 MAN1A2O60476 641 aa7.18□□□□□ -1.26
VPS41-207ENST00000439468 GPR37L1O60883 481 aa7.18□□□□□ -1.26
VPS41-207ENST00000439468 MCM6Q14566 821 aa7.18□□□□□ -1.26
VPS41-207ENST00000439468 CYLDQ9NQC7 956 aa7.18□□□□□ -1.26
VPS41-207ENST00000439468 SOBPA7XYQ1 873 aa7.17□□□□□ -1.26
VPS41-207ENST00000439468 ESPNB1AK53 854 aa7.17□□□□□ -1.26
VPS41-207ENST00000439468 MCCD1P59942 119 aaPredicted RBP7.17□□□□□ -1.26
VPS41-207ENST00000439468 RELBQ01201 579 aa7.17□□□□□ -1.26
VPS41-207ENST00000439468 SEPT12Q8IYM1 358 aa7.17□□□□□ -1.26
VPS41-207ENST00000439468 TRIM52Q96A61 297 aa7.17□□□□□ -1.26
VPS41-207ENST00000439468 AGBL1Q96MI9 1066 aa7.17□□□□□ -1.26
VPS41-207ENST00000439468 RNF20Q5VTR2 975 aa7.16□□□□□ -1.26
VPS41-207ENST00000439468 ESF1Q9H501 851 aaKnown RBP7.16□□□□□ -1.26
VPS41-207ENST00000439468 EIF4G2P78344 907 aaKnown RBP eCLIP7.15□□□□□ -1.26
VPS41-207ENST00000439468 VAC14Q08AM6 782 aa7.15□□□□□ -1.26
VPS41-207ENST00000439468 Q6ZVU0 165 aa7.15□□□□□ -1.26
VPS41-207ENST00000439468 PCDHB11Q9Y5F2 797 aa7.15□□□□□ -1.26
VPS41-207ENST00000439468 ZNF395Q9H8N7 513 aaPredicted RBP7.14□□□□□ -1.27
VPS41-207ENST00000439468 POLMQ9NP87 494 aaPredicted RBP7.14□□□□□ -1.27
VPS41-207ENST00000439468 TTLL8A6PVC2 850 aa7.13□□□□□ -1.27
VPS41-207ENST00000439468 TERTO14746 1132 aaKnown RBP7.13□□□□□ -1.27
VPS41-207ENST00000439468 RAD21O60216 631 aa7.13□□□□□ -1.27
VPS41-207ENST00000439468 WFS1O76024 890 aa7.13□□□□□ -1.27
VPS41-207ENST00000439468 ADH1AP07327 375 aa7.13□□□□□ -1.27
VPS41-207ENST00000439468 VEGFBP49765 207 aa7.13□□□□□ -1.27
VPS41-207ENST00000439468 IRF5Q13568 498 aa7.13□□□□□ -1.27
VPS41-207ENST00000439468 TREML4Q6UXN2 200 aa7.13□□□□□ -1.27
VPS41-207ENST00000439468 WWC1Q8IX03 1113 aa7.13□□□□□ -1.27
VPS41-207ENST00000439468 SOS2Q07890 1332 aaPredicted RBP7.12□□□□□ -1.27
VPS41-207ENST00000439468 FIGNL2A6NMB9 653 aa7.12□□□□□ -1.27
VPS41-207ENST00000439468 LILRA1O75019 489 aa7.12□□□□□ -1.27
VPS41-207ENST00000439468 UBTFP17480 764 aaKnown RBP7.12□□□□□ -1.27
VPS41-207ENST00000439468 SLC16A10Q8TF71 515 aa7.12□□□□□ -1.27
VPS41-207ENST00000439468 INSM2Q96T92 566 aaPredicted RBP7.12□□□□□ -1.27
VPS41-207ENST00000439468 NXF1Q9UBU9 619 aaKnown RBP7.12□□□□□ -1.27
VPS41-207ENST00000439468 SUPT5HO00267 1087 aaKnown RBP7.11□□□□□ -1.27
VPS41-207ENST00000439468 SPINT1O43278 529 aa7.11□□□□□ -1.27
VPS41-207ENST00000439468 ADD1P35611 737 aaKnown RBP7.11□□□□□ -1.27
VPS41-207ENST00000439468 FLIIQ13045 1269 aa7.11□□□□□ -1.27
VPS41-207ENST00000439468 WASHC4Q2M389 1173 aa7.11□□□□□ -1.27
VPS41-207ENST00000439468 SLFNL1Q499Z3 407 aa7.11□□□□□ -1.27
VPS41-207ENST00000439468 CC2D2BQ6DHV5 1058 aa7.11□□□□□ -1.27
VPS41-207ENST00000439468 CCDC125Q86Z20 511 aa7.11□□□□□ -1.27
VPS41-207ENST00000439468 CEP126Q9P2H0 1117 aa7.11□□□□□ -1.27
VPS41-207ENST00000439468 DNMT3LQ9UJW3 386 aa7.11□□□□□ -1.27
VPS41-207ENST00000439468 COG6Q9Y2V7 657 aa7.11□□□□□ -1.27
VPS41-207ENST00000439468 ATP5J2-PTCD1G3V325 749 aa7.1□□□□□ -1.27
VPS41-207ENST00000439468 CTSOP43234 321 aaPredicted RBP7.1□□□□□ -1.27
VPS41-207ENST00000439468 SEMA3FQ13275 785 aa7.1□□□□□ -1.27
VPS41-207ENST00000439468 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.1□□□□□ -1.27
VPS41-207ENST00000439468 POM121Q96HA1 1249 aa7.1□□□□□ -1.27
VPS41-207ENST00000439468 MEN1O00255 615 aa7.09□□□□□ -1.27
VPS41-207ENST00000439468 MYCP01106 439 aaPredicted RBP7.09□□□□□ -1.27
VPS41-207ENST00000439468 PTGIRP43119 386 aa7.09□□□□□ -1.27
VPS41-207ENST00000439468 NFX1Q12986 1120 aaKnown RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms