RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SBF2Q86WG5 1849 aa20.67■□□□□ 0.9
SDC1-204ENST00000429035 CSB-PGBD3P0DP91 1061 aa20.66■□□□□ 0.9
SDC1-204ENST00000429035 CARD11Q9BXL7 1154 aa20.66■□□□□ 0.9
SDC1-204ENST00000429035 PARD3Q8TEW0 1356 aa20.66■□□□□ 0.9
SDC1-204ENST00000429035 PEAK1Q9H792 1746 aa20.65■□□□□ 0.9
SDC1-204ENST00000429035 TTC21AQ8NDW8 1320 aa20.65■□□□□ 0.9
SDC1-204ENST00000429035 ZNF692Q9BU19 519 aaPredicted RBP20.65■□□□□ 0.9
SDC1-204ENST00000429035 NFAT5O94916 1531 aa20.64■□□□□ 0.9
SDC1-204ENST00000429035 KCNH5Q8NCM2 988 aa20.64■□□□□ 0.89
SDC1-204ENST00000429035 LTN1O94822 1766 aa20.64■□□□□ 0.89
SDC1-204ENST00000429035 WDR17Q8IZU2 1322 aa20.63■□□□□ 0.89
SDC1-204ENST00000429035 DDB1Q16531 1140 aa20.63■□□□□ 0.89
SDC1-204ENST00000429035 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.63■□□□□ 0.89
SDC1-204ENST00000429035 TMC1Q8TDI8 760 aa20.62■□□□□ 0.89
SDC1-204ENST00000429035 AXIN2Q9Y2T1 843 aa20.62■□□□□ 0.89
SDC1-204ENST00000429035 SBNO2Q9Y2G9 1366 aa20.6■□□□□ 0.89
SDC1-204ENST00000429035 ARHGEF25Q86VW2 580 aa20.6■□□□□ 0.89
SDC1-204ENST00000429035 USP54Q70EL1 1684 aa20.6■□□□□ 0.89
SDC1-204ENST00000429035 RGPD3A6NKT7 1758 aaPredicted RBP20.59■□□□□ 0.89
SDC1-204ENST00000429035 RGPD4Q7Z3J3 1758 aa20.59■□□□□ 0.89
SDC1-204ENST00000429035 NBPF14Q5TI25 921 aa20.59■□□□□ 0.89
SDC1-204ENST00000429035 ABCC6O95255 1503 aa20.58■□□□□ 0.88
SDC1-204ENST00000429035 C11orf95C9JLR9 678 aaPredicted RBP20.57■□□□□ 0.88
SDC1-204ENST00000429035 HDGFL2Q7Z4V5 671 aaPredicted RBP20.57■□□□□ 0.88
SDC1-204ENST00000429035 CD163L1Q9NR16 1453 aa20.56■□□□□ 0.88
SDC1-204ENST00000429035 NME9Q86XW9 330 aa20.56■□□□□ 0.88
SDC1-204ENST00000429035 CDCA7Q9BWT1 371 aaPredicted RBP20.54■□□□□ 0.88
SDC1-204ENST00000429035 CARD10Q9BWT7 1032 aa20.54■□□□□ 0.88
SDC1-204ENST00000429035 CCDC7Q96M83 1385 aa20.53■□□□□ 0.88
SDC1-204ENST00000429035 TNS2Q63HR2 1409 aa20.53■□□□□ 0.88
SDC1-204ENST00000429035 EDC4Q6P2E9 1401 aaKnown RBP20.53■□□□□ 0.88
SDC1-204ENST00000429035 KAT6BQ8WYB5 2073 aa20.52■□□□□ 0.88
SDC1-204ENST00000429035 A0A1W2PP64 1363 aa20.52■□□□□ 0.88
SDC1-204ENST00000429035 MARCH10Q8NA82 808 aaPredicted RBP20.52■□□□□ 0.88
SDC1-204ENST00000429035 SLC12A5Q9H2X9 1139 aa20.52■□□□□ 0.88
SDC1-204ENST00000429035 USP31Q70CQ4 1352 aa20.51■□□□□ 0.87
SDC1-204ENST00000429035 PTF1AQ7RTS3 328 aa20.5■□□□□ 0.87
SDC1-204ENST00000429035 NLRP2Q9NX02 1062 aa20.5■□□□□ 0.87
SDC1-204ENST00000429035 NHSQ6T4R5 1651 aa20.49■□□□□ 0.87
SDC1-204ENST00000429035 EXOC5O00471 708 aa20.49■□□□□ 0.87
SDC1-204ENST00000429035 BCL11BQ9C0K0 894 aaPredicted RBP20.49■□□□□ 0.87
SDC1-204ENST00000429035 TERF2IPQ9NYB0 399 aa20.49■□□□□ 0.87
SDC1-204ENST00000429035 ERBB3P21860 1342 aa20.49■□□□□ 0.87
SDC1-204ENST00000429035 PPP1R1BQ9UD71 204 aaPredicted RBP20.48■□□□□ 0.87
SDC1-204ENST00000429035 ANO8Q9HCE9 1232 aaPredicted RBP20.47■□□□□ 0.87
SDC1-204ENST00000429035 FAM208AQ9UK61 1670 aaKnown RBP20.46■□□□□ 0.87
SDC1-204ENST00000429035 ANKRD24Q8TF21 1146 aa20.46■□□□□ 0.87
SDC1-204ENST00000429035 CASZ1Q86V15 1759 aa20.46■□□□□ 0.87
SDC1-204ENST00000429035 PLSCR1O15162 318 aa20.45■□□□□ 0.86
SDC1-204ENST00000429035 SPON1Q9HCB6 807 aa20.45■□□□□ 0.86
SDC1-204ENST00000429035 BCL9O00512 1426 aa20.44■□□□□ 0.86
SDC1-204ENST00000429035 ST20-MTHFSA0A0A6YYL1 179 aa20.44■□□□□ 0.86
SDC1-204ENST00000429035 ACSBG1Q96GR2 724 aa20.44■□□□□ 0.86
SDC1-204ENST00000429035 BTAF1O14981 1849 aa20.43■□□□□ 0.86
SDC1-204ENST00000429035 LTV1Q96GA3 475 aaPredicted RBP20.43■□□□□ 0.86
SDC1-204ENST00000429035 NINLQ9Y2I6 1382 aa20.43■□□□□ 0.86
SDC1-204ENST00000429035 KCNQ2O43526 872 aa20.42■□□□□ 0.86
SDC1-204ENST00000429035 IL2RBP14784 551 aa20.42■□□□□ 0.86
SDC1-204ENST00000429035 RGPD2P0DJD1 1756 aa20.41■□□□□ 0.86
SDC1-204ENST00000429035 TXNRD1Q16881 649 aa20.4■□□□□ 0.86
SDC1-204ENST00000429035 TESK2Q96S53 571 aa20.4■□□□□ 0.86
SDC1-204ENST00000429035 STK32BQ9NY57 414 aa20.4■□□□□ 0.86
SDC1-204ENST00000429035 COG3Q96JB2 828 aa20.39■□□□□ 0.85
SDC1-204ENST00000429035 PUS7Q96PZ0 661 aaKnown RBP20.39■□□□□ 0.85
SDC1-204ENST00000429035 KIF20BQ96Q89 1820 aa20.39■□□□□ 0.85
SDC1-204ENST00000429035 MYOM1P52179 1685 aa20.38■□□□□ 0.85
SDC1-204ENST00000429035 USP47Q96K76 1375 aa20.37■□□□□ 0.85
SDC1-204ENST00000429035 ZBTB7AO95365 584 aa20.37■□□□□ 0.85
SDC1-204ENST00000429035 TRIM26Q12899 539 aaPredicted RBP20.37■□□□□ 0.85
SDC1-204ENST00000429035 PROM2Q8N271 834 aa20.37■□□□□ 0.85
SDC1-204ENST00000429035 DOT1LQ8TEK3 1739 aa20.36■□□□□ 0.85
SDC1-204ENST00000429035 ANKRD36BQ8N2N9 1353 aa20.36■□□□□ 0.85
SDC1-204ENST00000429035 PDGFDQ9GZP0 370 aaPredicted RBP20.36■□□□□ 0.85
SDC1-204ENST00000429035 AMPHP49418 695 aa20.35■□□□□ 0.85
SDC1-204ENST00000429035 IP6K1Q92551 441 aa20.35■□□□□ 0.85
SDC1-204ENST00000429035 MAP3K19Q56UN5 1328 aa20.34■□□□□ 0.85
SDC1-204ENST00000429035 FBLN1P23142 703 aa20.33■□□□□ 0.85
SDC1-204ENST00000429035 TMF1P82094 1093 aa20.33■□□□□ 0.85
SDC1-204ENST00000429035 DDX54Q8TDD1 881 aaKnown RBP20.33■□□□□ 0.85
SDC1-204ENST00000429035 PAPPAQ13219 1627 aa20.33■□□□□ 0.84
SDC1-204ENST00000429035 SHANK3Q9BYB0 1731 aa20.33■□□□□ 0.84
SDC1-204ENST00000429035 DCAF8L1A6NGE4 600 aa20.32■□□□□ 0.84
SDC1-204ENST00000429035 SLC24A1O60721 1099 aa20.32■□□□□ 0.84
SDC1-204ENST00000429035 HOXC9P31274 260 aa20.32■□□□□ 0.84
SDC1-204ENST00000429035 SLC15A2Q16348 729 aa20.32■□□□□ 0.84
SDC1-204ENST00000429035 ATF5Q9Y2D1 282 aaPredicted RBP20.32■□□□□ 0.84
SDC1-204ENST00000429035 RRS1Q15050 365 aaKnown RBP20.3■□□□□ 0.84
SDC1-204ENST00000429035 GGNBP2Q9H3C7 697 aa20.3■□□□□ 0.84
SDC1-204ENST00000429035 SYTL4Q96C24 671 aaPredicted RBP20.29■□□□□ 0.84
SDC1-204ENST00000429035 RTL1A6NKG5 1358 aa20.29■□□□□ 0.84
SDC1-204ENST00000429035 SMG6Q86US8 1419 aaKnown RBP20.28■□□□□ 0.84
SDC1-204ENST00000429035 MEGF6O75095 1541 aa20.28■□□□□ 0.84
SDC1-204ENST00000429035 YY1P25490 414 aa20.28■□□□□ 0.84
SDC1-204ENST00000429035 TUBGCP6Q96RT7 1819 aa20.26■□□□□ 0.83
SDC1-204ENST00000429035 USHBP1Q8N6Y0 703 aa20.26■□□□□ 0.83
SDC1-204ENST00000429035 ZNF827Q17R98 1081 aa20.24■□□□□ 0.83
SDC1-204ENST00000429035 CDCA8Q53HL2 280 aa20.24■□□□□ 0.83
SDC1-204ENST00000429035 MTFR1LQ9H019 292 aa20.24■□□□□ 0.83
SDC1-204ENST00000429035 FYB1O15117 783 aa20.23■□□□□ 0.83
SDC1-204ENST00000429035 LY75O60449 1722 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms