RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 UQCRHP07919 91 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 TMEM63CQ9P1W3 806 aa6.35□□□□□ -1.39
RIF1-203ENST00000428287 EFCAB6Q5THR3 1501 aa6.34□□□□□ -1.39
RIF1-203ENST00000428287 LRSAM1Q6UWE0 723 aa6.34□□□□□ -1.39
RIF1-203ENST00000428287 NSD2O96028 1365 aa6.34□□□□□ -1.39
RIF1-203ENST00000428287 KIDINS220Q9ULH0 1771 aa6.34□□□□□ -1.39
RIF1-203ENST00000428287 SSH1Q8WYL5 1049 aa6.34□□□□□ -1.39
RIF1-203ENST00000428287 ABCC1P33527 1531 aa6.34□□□□□ -1.39
RIF1-203ENST00000428287 COL3A1P02461 1466 aaPredicted RBP6.34□□□□□ -1.39
RIF1-203ENST00000428287 CREBRFQ8IUR6 639 aa6.34□□□□□ -1.39
RIF1-203ENST00000428287 MYH14Q7Z406 1995 aaKnown RBP6.34□□□□□ -1.39
RIF1-203ENST00000428287 PLEKHD1A6NEE1 506 aa6.34□□□□□ -1.39
RIF1-203ENST00000428287 CUL4AQ13619 759 aa6.34□□□□□ -1.39
RIF1-203ENST00000428287 ZSCAN23Q3MJ62 389 aa6.34□□□□□ -1.39
RIF1-203ENST00000428287 RABEP1Q15276 862 aa6.34□□□□□ -1.4
RIF1-203ENST00000428287 ANKRD7Q92527 254 aa6.34□□□□□ -1.4
RIF1-203ENST00000428287 PNPLA6Q8IY17 1366 aa6.34□□□□□ -1.4
RIF1-203ENST00000428287 ARHGAP45Q92619 1136 aa6.33□□□□□ -1.4
RIF1-203ENST00000428287 FANCAO15360 1455 aa6.33□□□□□ -1.4
RIF1-203ENST00000428287 VGFO15240 615 aaPredicted RBP6.33□□□□□ -1.4
RIF1-203ENST00000428287 TMEM51Q9NW97 253 aa6.33□□□□□ -1.4
RIF1-203ENST00000428287 R3HCC1Q9Y3T6 440 aaKnown RBP6.33□□□□□ -1.4
RIF1-203ENST00000428287 MYO5AQ9Y4I1 1855 aaKnown RBP6.33□□□□□ -1.4
RIF1-203ENST00000428287 FAM193AP78312 1265 aa6.33□□□□□ -1.4
RIF1-203ENST00000428287 TBC1D9Q6ZT07 1266 aa6.33□□□□□ -1.4
RIF1-203ENST00000428287 GLI2P10070 1586 aa6.33□□□□□ -1.4
RIF1-203ENST00000428287 RGL3Q3MIN7 710 aa6.33□□□□□ -1.4
RIF1-203ENST00000428287 CHD1LQ86WJ1 897 aa6.33□□□□□ -1.4
RIF1-203ENST00000428287 GPT2Q8TD30 523 aa6.33□□□□□ -1.4
RIF1-203ENST00000428287 PIK3C2BO00750 1634 aa6.32□□□□□ -1.4
RIF1-203ENST00000428287 ALDH1L2Q3SY69 923 aa6.32□□□□□ -1.4
RIF1-203ENST00000428287 INTS4Q96HW7 963 aaKnown RBP6.32□□□□□ -1.4
RIF1-203ENST00000428287 XPCQ01831 940 aaPredicted RBP6.32□□□□□ -1.4
RIF1-203ENST00000428287 KIAA1524Q8TCG1 905 aa6.32□□□□□ -1.4
RIF1-203ENST00000428287 KIF3AQ9Y496 699 aa6.32□□□□□ -1.4
RIF1-203ENST00000428287 ATAD2Q6PL18 1390 aa6.32□□□□□ -1.4
RIF1-203ENST00000428287 PPP4R3BQ5MIZ7 849 aa6.32□□□□□ -1.4
RIF1-203ENST00000428287 GCC1Q96CN9 775 aa6.32□□□□□ -1.4
RIF1-203ENST00000428287 AKAP12Q02952 1782 aa6.32□□□□□ -1.4
RIF1-203ENST00000428287 CCDC88AQ3V6T2 1871 aa6.32□□□□□ -1.4
RIF1-203ENST00000428287 JPH4Q96JJ6 628 aa6.32□□□□□ -1.4
RIF1-203ENST00000428287 MYO18AQ92614 2054 aaKnown RBP6.32□□□□□ -1.4
RIF1-203ENST00000428287 SSFA2P28290 1259 aa6.31□□□□□ -1.4
RIF1-203ENST00000428287 MFAP1P55081 439 aaKnown RBP6.31□□□□□ -1.4
RIF1-203ENST00000428287 SYCP1Q15431 976 aa6.31□□□□□ -1.4
RIF1-203ENST00000428287 CCDC146Q8IYE0 955 aa6.31□□□□□ -1.4
RIF1-203ENST00000428287 TNNQ9UQP3 1299 aa6.31□□□□□ -1.4
RIF1-203ENST00000428287 MRC2Q9UBG0 1479 aa6.31□□□□□ -1.4
RIF1-203ENST00000428287 SIRT2Q8IXJ6 389 aa6.31□□□□□ -1.4
RIF1-203ENST00000428287 CAVIN1Q6NZI2 390 aaKnown RBP6.31□□□□□ -1.4
RIF1-203ENST00000428287 TMEM87AQ8NBN3 555 aa6.31□□□□□ -1.4
RIF1-203ENST00000428287 ATP10DQ9P241 1426 aa6.31□□□□□ -1.4
RIF1-203ENST00000428287 ZBTB7BO15156 539 aaPredicted RBP6.3□□□□□ -1.4
RIF1-203ENST00000428287 TNNT2P45379 298 aaPredicted RBP6.3□□□□□ -1.4
RIF1-203ENST00000428287 MCM2P49736 904 aa6.3□□□□□ -1.4
RIF1-203ENST00000428287 GABPB1Q06547 395 aaPredicted RBP6.3□□□□□ -1.4
RIF1-203ENST00000428287 ARXQ96QS3 562 aa6.3□□□□□ -1.4
RIF1-203ENST00000428287 CHMP4BQ9H444 224 aaKnown RBP6.3□□□□□ -1.4
RIF1-203ENST00000428287 CCDC39Q9UFE4 941 aa6.3□□□□□ -1.4
RIF1-203ENST00000428287 KIF24Q5T7B8 1368 aa6.3□□□□□ -1.4
RIF1-203ENST00000428287 UVSSAQ2YD98 709 aa6.3□□□□□ -1.4
RIF1-203ENST00000428287 TRIM35Q9UPQ4 493 aa6.3□□□□□ -1.4
RIF1-203ENST00000428287 ZFYVE16Q7Z3T8 1539 aa6.3□□□□□ -1.4
RIF1-203ENST00000428287 GOLGA4Q13439 2230 aaKnown RBP6.3□□□□□ -1.4
RIF1-203ENST00000428287 EPB41L2O43491 1005 aaKnown RBP6.3□□□□□ -1.4
RIF1-203ENST00000428287 ADGRB3O60242 1522 aa6.3□□□□□ -1.4
RIF1-203ENST00000428287 BRD1O95696 1058 aa6.3□□□□□ -1.4
RIF1-203ENST00000428287 IPO8O15397 1037 aaKnown RBP6.3□□□□□ -1.4
RIF1-203ENST00000428287 PLEKHF1Q96S99 279 aa6.3□□□□□ -1.4
RIF1-203ENST00000428287 MON2Q7Z3U7 1717 aa6.3□□□□□ -1.4
RIF1-203ENST00000428287 MTHFSP49914 203 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 PKP1Q13835 747 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 PDCL2Q8N4E4 241 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 OSBPL3Q9H4L5 887 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 RTL1A6NKG5 1358 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 LNPKQ9C0E8 428 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 FUCA2Q9BTY2 467 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 DDX41Q9UJV9 622 aaKnown RBP6.29□□□□□ -1.4
RIF1-203ENST00000428287 TMPOP42166 694 aaKnown RBP6.29□□□□□ -1.4
RIF1-203ENST00000428287 TMEM57Q8N5G2 664 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 ZHX1Q9UKY1 873 aaPredicted RBP6.29□□□□□ -1.4
RIF1-203ENST00000428287 XRN1Q8IZH2 1706 aaKnown RBP6.29□□□□□ -1.4
RIF1-203ENST00000428287 TULP2O00295 520 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 FTSJ3Q8IY81 847 aaKnown RBP6.29□□□□□ -1.4
RIF1-203ENST00000428287 RBM42Q9BTD8 480 aaKnown RBP6.29□□□□□ -1.4
RIF1-203ENST00000428287 USP26Q9BXU7 913 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 BCL2L12Q9HB09 334 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 FMN2Q9NZ56 1722 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 HNRNPMP52272 730 aaKnown RBP eCLIP6.29□□□□□ -1.47e-8■■■□□ 15.7
RIF1-203ENST00000428287 NOLC1Q14978 699 aaKnown RBP eCLIP6.29□□□□□ -1.4
RIF1-203ENST00000428287 LRRC7Q96NW7 1537 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 DCTPP1Q9H773 170 aa6.29□□□□□ -1.4
RIF1-203ENST00000428287 LMTK2Q8IWU2 1503 aa6.28□□□□□ -1.4
RIF1-203ENST00000428287 PDE4CQ08493 712 aa6.28□□□□□ -1.4
RIF1-203ENST00000428287 FAM53CQ9NYF3 392 aa6.28□□□□□ -1.4
RIF1-203ENST00000428287 USP25Q9UHP3 1055 aa6.28□□□□□ -1.4
RIF1-203ENST00000428287 NSD3Q9BZ95 1437 aa6.28□□□□□ -1.4
RIF1-203ENST00000428287 DIAPH3Q9NSV4 1193 aa6.28□□□□□ -1.4
RIF1-203ENST00000428287 ANKRD36BQ8N2N9 1353 aa6.28□□□□□ -1.4
RIF1-203ENST00000428287 BCL2L13Q9BXK5 485 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms