RNA–Protein interactions for RNA: ENST00000427455.1

HERPUD2-205, Transcript of HERPUD family member 2, humanhuman

TSL 3

Gene HERPUD2, Length 672 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-205ENST00000427455 CCDC9Q9Y3X0 531 aaKnown RBP34.61■■■■□ 3.13
HERPUD2-205ENST00000427455 STRN4Q9NRL3 753 aa34.6■■■■□ 3.13
HERPUD2-205ENST00000427455 ANKRD26Q9UPS8 1709 aa34.6■■■■□ 3.13
HERPUD2-205ENST00000427455 EVA1CP58658 441 aa34.57■■■■□ 3.12
HERPUD2-205ENST00000427455 SPATA31A5Q5VU36 1347 aa34.56■■■■□ 3.12
HERPUD2-205ENST00000427455 SPATA31A7Q8IWB4 1347 aa34.56■■■■□ 3.12
HERPUD2-205ENST00000427455 RGPD5Q99666 1765 aa34.56■■■■□ 3.12
HERPUD2-205ENST00000427455 NSD2O96028 1365 aa34.55■■■■□ 3.12
HERPUD2-205ENST00000427455 AXIN2Q9Y2T1 843 aa34.54■■■■□ 3.12
HERPUD2-205ENST00000427455 KNSTRNQ9Y448 316 aa34.53■■■■□ 3.12
HERPUD2-205ENST00000427455 LARP1Q6PKG0 1096 aaKnown RBP34.51■■■■□ 3.12
HERPUD2-205ENST00000427455 MAP3K19Q56UN5 1328 aa34.51■■■■□ 3.11
HERPUD2-205ENST00000427455 SPATA31A1Q5TZJ5 1347 aa34.51■■■■□ 3.11
HERPUD2-205ENST00000427455 CRB1P82279 1406 aa34.5■■■■□ 3.11
HERPUD2-205ENST00000427455 BLMP54132 1417 aaPredicted RBP34.49■■■■□ 3.11
HERPUD2-205ENST00000427455 RTL1A6NKG5 1358 aa34.49■■■■□ 3.11
HERPUD2-205ENST00000427455 WDR17Q8IZU2 1322 aa34.48■■■■□ 3.11
HERPUD2-205ENST00000427455 FBLN1P23142 703 aa34.47■■■■□ 3.11
HERPUD2-205ENST00000427455 IP6K1Q92551 441 aa34.46■■■■□ 3.11
HERPUD2-205ENST00000427455 ONECUT3O60422 494 aaPredicted RBP34.45■■■■□ 3.11
HERPUD2-205ENST00000427455 RRS1Q15050 365 aaKnown RBP34.45■■■■□ 3.11
HERPUD2-205ENST00000427455 THSD7AQ9UPZ6 1657 aa34.44■■■■□ 3.1
HERPUD2-205ENST00000427455 FAM98CQ17RN3 349 aaKnown RBP34.44■■■■□ 3.1
HERPUD2-205ENST00000427455 ERBB3P21860 1342 aa34.44■■■■□ 3.1
HERPUD2-205ENST00000427455 SOCS7O14512 581 aa34.43■■■■□ 3.1
HERPUD2-205ENST00000427455 PER1O15534 1290 aaPredicted RBP34.43■■■■□ 3.1
HERPUD2-205ENST00000427455 AMPHP49418 695 aa34.43■■■■□ 3.1
HERPUD2-205ENST00000427455 KIF24Q5T7B8 1368 aa34.43■■■■□ 3.1
HERPUD2-205ENST00000427455 CSB-PGBD3P0DP91 1061 aa34.42■■■■□ 3.1
HERPUD2-205ENST00000427455 AMER1Q5JTC6 1135 aaPredicted RBP34.42■■■■□ 3.1
HERPUD2-205ENST00000427455 TOM1L2Q6ZVM7 507 aa34.42■■■■□ 3.1
HERPUD2-205ENST00000427455 USP35Q9P2H5 1018 aa34.42■■■■□ 3.1
HERPUD2-205ENST00000427455 HOXC9P31274 260 aa34.41■■■■□ 3.1
HERPUD2-205ENST00000427455 SEPT12Q8IYM1 358 aa34.41■■■■□ 3.1
HERPUD2-205ENST00000427455 PEAK1Q9H792 1746 aa34.41■■■■□ 3.1
HERPUD2-205ENST00000427455 TCP11L2Q8N4U5 519 aa34.4■■■■□ 3.1
HERPUD2-205ENST00000427455 THRAP3Q9Y2W1 955 aaKnown RBP34.4■■■■□ 3.1
HERPUD2-205ENST00000427455 FAM208AQ9UK61 1670 aaKnown RBP34.4■■■■□ 3.1
HERPUD2-205ENST00000427455 BARGINQ6ZT62 677 aa34.39■■■■□ 3.1
HERPUD2-205ENST00000427455 FLT4P35916 1363 aa34.38■■■■□ 3.09
HERPUD2-205ENST00000427455 A0A0G2JS52 829 aa34.38■■■■□ 3.09
HERPUD2-205ENST00000427455 MYT1Q01538 1121 aa34.38■■■■□ 3.09
HERPUD2-205ENST00000427455 ANKRD24Q8TF21 1146 aa34.38■■■■□ 3.09
HERPUD2-205ENST00000427455 BRWD3Q6RI45 1802 aa34.38■■■■□ 3.09
HERPUD2-205ENST00000427455 MORC1Q86VD1 984 aa34.36■■■■□ 3.09
HERPUD2-205ENST00000427455 CARD10Q9BWT7 1032 aa34.36■■■■□ 3.09
HERPUD2-205ENST00000427455 MAP2P11137 1827 aaKnown RBP34.36■■■■□ 3.09
HERPUD2-205ENST00000427455 WNK3Q9BYP7 1800 aa34.36■■■■□ 3.09
HERPUD2-205ENST00000427455 EMILIN1Q9Y6C2 1016 aa34.35■■■■□ 3.09
HERPUD2-205ENST00000427455 NPC1L1Q9UHC9 1359 aa34.35■■■■□ 3.09
HERPUD2-205ENST00000427455 TNNT2P45379 298 aaPredicted RBP34.33■■■■□ 3.09
HERPUD2-205ENST00000427455 INSRP06213 1382 aa34.32■■■■□ 3.08
HERPUD2-205ENST00000427455 PARP4Q9UKK3 1724 aaKnown RBP34.32■■■■□ 3.08
HERPUD2-205ENST00000427455 SMG6Q86US8 1419 aaKnown RBP34.31■■■■□ 3.08
HERPUD2-205ENST00000427455 NLRP2Q9NX02 1062 aa34.3■■■■□ 3.08
HERPUD2-205ENST00000427455 POLKQ9UBT6 870 aa34.3■■■■□ 3.08
HERPUD2-205ENST00000427455 LTV1Q96GA3 475 aaPredicted RBP34.29■■■■□ 3.08
HERPUD2-205ENST00000427455 PPM1GO15355 546 aaPredicted RBP34.27■■■■□ 3.08
HERPUD2-205ENST00000427455 HSP90AB2PQ58FF8 381 aa34.27■■■■□ 3.08
HERPUD2-205ENST00000427455 CC2D1BQ5T0F9 858 aaKnown RBP34.27■■■■□ 3.08
HERPUD2-205ENST00000427455 KRT27Q7Z3Y8 459 aa34.26■■■■□ 3.08
HERPUD2-205ENST00000427455 DISP2A7MBM2 1401 aa34.26■■■■□ 3.07
HERPUD2-205ENST00000427455 LRRC37A3O60309 1634 aa34.25■■■■□ 3.07
HERPUD2-205ENST00000427455 CDCA7Q9BWT1 371 aaPredicted RBP34.24■■■■□ 3.07
HERPUD2-205ENST00000427455 EP400Q96L91 3159 aa34.23■■■■□ 3.07
HERPUD2-205ENST00000427455 RGPD2P0DJD1 1756 aa34.23■■■■□ 3.07
HERPUD2-205ENST00000427455 PDE3BQ13370 1112 aa34.16■■■■□ 3.06
HERPUD2-205ENST00000427455 CNGB1Q14028 1251 aaPredicted RBP34.15■■■■□ 3.06
HERPUD2-205ENST00000427455 DDB1Q16531 1140 aa34.15■■■■□ 3.06
HERPUD2-205ENST00000427455 IL2RBP14784 551 aa34.14■■■■□ 3.06
HERPUD2-205ENST00000427455 NBPF6Q5VWK0 638 aa34.14■■■■□ 3.06
HERPUD2-205ENST00000427455 UPF1Q92900 1129 aaKnown RBP eCLIP34.14■■■■□ 3.06
HERPUD2-205ENST00000427455 NBPF4Q96M43 638 aa34.14■■■■□ 3.06
HERPUD2-205ENST00000427455 TNS2Q63HR2 1409 aa34.13■■■■□ 3.05
HERPUD2-205ENST00000427455 DDX10Q13206 875 aaKnown RBP34.11■■■■□ 3.05
HERPUD2-205ENST00000427455 NCAPD2Q15021 1401 aa34.1■■■■□ 3.05
HERPUD2-205ENST00000427455 EIF4A2Q14240 407 aaKnown RBP34.09■■■■□ 3.05
HERPUD2-205ENST00000427455 USHBP1Q8N6Y0 703 aa34.08■■■■□ 3.05
HERPUD2-205ENST00000427455 MTHFSP49914 203 aa34.07■■■■□ 3.04
HERPUD2-205ENST00000427455 FAM182BQ5T319 152 aa34.07■■■■□ 3.04
HERPUD2-205ENST00000427455 MEGF6O75095 1541 aa34.07■■■■□ 3.04
HERPUD2-205ENST00000427455 OVOS2A0A0G2JMS6 1433 aa34.06■■■■□ 3.04
HERPUD2-205ENST00000427455 EXOC5O00471 708 aa34.06■■■■□ 3.04
HERPUD2-205ENST00000427455 FAM196AQ6ZSG2 479 aa34.04■■■■□ 3.04
HERPUD2-205ENST00000427455 EYA1Q99502 592 aa34.03■■■■□ 3.04
HERPUD2-205ENST00000427455 ZNF316A6NFI3 1004 aaPredicted RBP34.02■■■■□ 3.04
HERPUD2-205ENST00000427455 RAPGEF4Q8WZA2 1011 aa34.02■■■■□ 3.04
HERPUD2-205ENST00000427455 CCDC125Q86Z20 511 aa34.01■■■■□ 3.03
HERPUD2-205ENST00000427455 RGPD1P0DJD0 1748 aa34.01■■■■□ 3.03
HERPUD2-205ENST00000427455 IGSF1Q8N6C5 1336 aa34■■■■□ 3.03
HERPUD2-205ENST00000427455 PARD3Q8TEW0 1356 aa33.99■■■■□ 3.03
HERPUD2-205ENST00000427455 MARCH10Q8NA82 808 aaPredicted RBP33.99■■■■□ 3.03
HERPUD2-205ENST00000427455 BCL9O00512 1426 aa33.97■■■■□ 3.03
HERPUD2-205ENST00000427455 SHANK3Q9BYB0 1731 aa33.97■■■■□ 3.03
HERPUD2-205ENST00000427455 TATP17735 454 aaPredicted RBP33.97■■■■□ 3.03
HERPUD2-205ENST00000427455 COL3A1P02461 1466 aaPredicted RBP33.96■■■■□ 3.03
HERPUD2-205ENST00000427455 PPP2R1AP30153 589 aa33.95■■■■□ 3.03
HERPUD2-205ENST00000427455 IL13P35225 146 aa33.95■■■■□ 3.03
HERPUD2-205ENST00000427455 TNS1Q9HBL0 1735 aaKnown RBP33.95■■■■□ 3.03
HERPUD2-205ENST00000427455 PKD1L3Q7Z443 1732 aa33.94■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms