RNA–Protein interactions for RNA: ENST00000425072.5

MDC1-205, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-205ENST00000425072 HOXC9P31274 260 aa13.69□□□□□ -0.22
MDC1-205ENST00000425072 IL13P35225 146 aa13.69□□□□□ -0.22
MDC1-205ENST00000425072 HNRNPUQ00839 825 aaKnown RBP eCLIP13.69□□□□□ -0.22
MDC1-205ENST00000425072 POTEAQ6S8J7 498 aa13.69□□□□□ -0.22
MDC1-205ENST00000425072 SMG6Q86US8 1419 aaKnown RBP13.69□□□□□ -0.22
MDC1-205ENST00000425072 ALS2Q96Q42 1657 aa13.69□□□□□ -0.22
MDC1-205ENST00000425072 ROBO1Q9Y6N7 1651 aa13.69□□□□□ -0.22
MDC1-205ENST00000425072 NHSL1Q5SYE7 1610 aa13.68□□□□□ -0.22
MDC1-205ENST00000425072 CDK12Q9NYV4 1490 aaPredicted RBP13.68□□□□□ -0.22
MDC1-205ENST00000425072 PLEKHG5O94827 1062 aa13.68□□□□□ -0.22
MDC1-205ENST00000425072 CENPBP07199 599 aaPredicted RBP13.68□□□□□ -0.22
MDC1-205ENST00000425072 ZC3H6P61129 1189 aaKnown RBP13.68□□□□□ -0.22
MDC1-205ENST00000425072 RUNDC1Q96C34 613 aa13.68□□□□□ -0.22
MDC1-205ENST00000425072 CABLES1Q8TDN4 633 aa13.67□□□□□ -0.22
MDC1-205ENST00000425072 RTL1A6NKG5 1358 aa13.67□□□□□ -0.22
MDC1-205ENST00000425072 AHDC1Q5TGY3 1603 aaPredicted RBP13.66□□□□□ -0.22
MDC1-205ENST00000425072 ZBTB7CA1YPR0 619 aa13.66□□□□□ -0.22
MDC1-205ENST00000425072 EIF4A2Q14240 407 aaKnown RBP13.66□□□□□ -0.22
MDC1-205ENST00000425072 SLIT3O75094 1523 aa13.65□□□□□ -0.22
MDC1-205ENST00000425072 RNF216Q9NWF9 866 aaPredicted RBP13.65□□□□□ -0.22
MDC1-205ENST00000425072 CPDO75976 1380 aa13.64□□□□□ -0.23
MDC1-205ENST00000425072 MARF1Q9Y4F3 1742 aaKnown RBP13.64□□□□□ -0.23
MDC1-205ENST00000425072 PRDM11Q9NQV5 511 aa13.63□□□□□ -0.23
MDC1-205ENST00000425072 MAPK8IP3Q9UPT6 1336 aa13.63□□□□□ -0.23
MDC1-205ENST00000425072 PHLPP1O60346 1717 aa13.62□□□□□ -0.23
MDC1-205ENST00000425072 APAF1O14727 1248 aa13.62□□□□□ -0.23
MDC1-205ENST00000425072 SULT6B1Q6IMI4 303 aa13.62□□□□□ -0.23
MDC1-205ENST00000425072 LTV1Q96GA3 475 aaPredicted RBP13.62□□□□□ -0.23
MDC1-205ENST00000425072 NFAT5O94916 1531 aa13.62□□□□□ -0.23
MDC1-205ENST00000425072 BLMP54132 1417 aaPredicted RBP13.62□□□□□ -0.23
MDC1-205ENST00000425072 COL3A1P02461 1466 aaPredicted RBP13.61□□□□□ -0.23
MDC1-205ENST00000425072 LTN1O94822 1766 aa13.61□□□□□ -0.23
MDC1-205ENST00000425072 EVA1CP58658 441 aa13.61□□□□□ -0.23
MDC1-205ENST00000425072 PDE3BQ13370 1112 aa13.61□□□□□ -0.23
MDC1-205ENST00000425072 CCDC146Q8IYE0 955 aa13.61□□□□□ -0.23
MDC1-205ENST00000425072 TCP11L2Q8N4U5 519 aa13.61□□□□□ -0.23
MDC1-205ENST00000425072 EYA1Q99502 592 aa13.61□□□□□ -0.23
MDC1-205ENST00000425072 ZBED9Q6R2W3 1325 aa13.61□□□□□ -0.23
MDC1-205ENST00000425072 HMOX1P09601 288 aa13.6□□□□□ -0.23
MDC1-205ENST00000425072 ANKRD24Q8TF21 1146 aa13.6□□□□□ -0.23
MDC1-205ENST00000425072 PLEKHF1Q96S99 279 aa13.6□□□□□ -0.23
MDC1-205ENST00000425072 RSPH6AQ9H0K4 717 aa13.6□□□□□ -0.23
MDC1-205ENST00000425072 AXIN2Q9Y2T1 843 aa13.6□□□□□ -0.23
MDC1-205ENST00000425072 KIAA0232Q92628 1395 aa13.59□□□□□ -0.23
MDC1-205ENST00000425072 FAM83GA6ND36 823 aa13.59□□□□□ -0.23
MDC1-205ENST00000425072 CSB-PGBD3P0DP91 1061 aa13.59□□□□□ -0.23
MDC1-205ENST00000425072 PRKAR2BP31323 418 aa13.59□□□□□ -0.23
MDC1-205ENST00000425072 CHRNA2Q15822 529 aa13.59□□□□□ -0.23
MDC1-205ENST00000425072 UPF1Q92900 1129 aaKnown RBP eCLIP13.59□□□□□ -0.23
MDC1-205ENST00000425072 PHRF1Q9P1Y6 1649 aaKnown RBP13.59□□□□□ -0.23
MDC1-205ENST00000425072 JCADQ9P266 1359 aa13.58□□□□□ -0.23
MDC1-205ENST00000425072 CCDC27Q2M243 656 aa13.58□□□□□ -0.24
MDC1-205ENST00000425072 SHPRHQ149N8 1683 aa13.58□□□□□ -0.24
MDC1-205ENST00000425072 PEAK1Q9H792 1746 aa13.58□□□□□ -0.24
MDC1-205ENST00000425072 IGSF1Q8N6C5 1336 aa13.58□□□□□ -0.24
MDC1-205ENST00000425072 TMPOP42166 694 aaKnown RBP13.57□□□□□ -0.24
MDC1-205ENST00000425072 NBPF6Q5VWK0 638 aa13.57□□□□□ -0.24
MDC1-205ENST00000425072 NBPF4Q96M43 638 aa13.57□□□□□ -0.24
MDC1-205ENST00000425072 SALL2Q9Y467 1007 aaPredicted RBP13.57□□□□□ -0.24
MDC1-205ENST00000425072 ABCC6O95255 1503 aa13.57□□□□□ -0.24
MDC1-205ENST00000425072 RIPK4P57078 832 aa13.56□□□□□ -0.24
MDC1-205ENST00000425072 NLRP2Q9NX02 1062 aa13.56□□□□□ -0.24
MDC1-205ENST00000425072 SPATA31A6Q5VVP1 1343 aa13.56□□□□□ -0.24
MDC1-205ENST00000425072 COL16A1Q07092 1604 aaPredicted RBP13.55□□□□□ -0.24
MDC1-205ENST00000425072 COL22A1Q8NFW1 1626 aaPredicted RBP13.55□□□□□ -0.24
MDC1-205ENST00000425072 NUTM2BA6NNL0 878 aaPredicted RBP13.55□□□□□ -0.24
MDC1-205ENST00000425072 NUTM2EB1AL46 878 aaPredicted RBP13.55□□□□□ -0.24
MDC1-205ENST00000425072 LMOD3Q0VAK6 560 aa13.55□□□□□ -0.24
MDC1-205ENST00000425072 NEUROD2Q15784 382 aa13.55□□□□□ -0.24
MDC1-205ENST00000425072 NFE2L2Q16236 605 aa13.55□□□□□ -0.24
MDC1-205ENST00000425072 NUTM2AQ8IVF1 878 aaPredicted RBP13.55□□□□□ -0.24
MDC1-205ENST00000425072 WDR63Q8IWG1 891 aa13.55□□□□□ -0.24
MDC1-205ENST00000425072 ERBB3P21860 1342 aa13.55□□□□□ -0.24
MDC1-205ENST00000425072 CRYBG1Q9Y4K1 1723 aa13.54□□□□□ -0.24
MDC1-205ENST00000425072 CALD1Q05682 793 aaKnown RBP13.54□□□□□ -0.24
MDC1-205ENST00000425072 GOLGA2Q08379 1002 aa13.54□□□□□ -0.24
MDC1-205ENST00000425072 AMOTQ4VCS5 1084 aa13.54□□□□□ -0.24
MDC1-205ENST00000425072 PLEKHO1Q53GL0 409 aaPredicted RBP13.54□□□□□ -0.24
MDC1-205ENST00000425072 TOM1L2Q6ZVM7 507 aa13.54□□□□□ -0.24
MDC1-205ENST00000425072 GAS2L2Q8NHY3 880 aa13.54□□□□□ -0.24
MDC1-205ENST00000425072 PHACTR3Q96KR7 559 aa13.54□□□□□ -0.24
MDC1-205ENST00000425072 KDRP35968 1356 aa13.54□□□□□ -0.24
MDC1-205ENST00000425072 COL18A1P39060 1754 aa13.53□□□□□ -0.24
MDC1-205ENST00000425072 ADAMTS2O95450 1211 aa13.53□□□□□ -0.24
MDC1-205ENST00000425072 AEBP1Q8IUX7 1158 aa13.53□□□□□ -0.24
MDC1-205ENST00000425072 RAPGEF4Q8WZA2 1011 aa13.53□□□□□ -0.24
MDC1-205ENST00000425072 BTG4Q9NY30 223 aa13.53□□□□□ -0.24
MDC1-205ENST00000425072 WDR17Q8IZU2 1322 aa13.53□□□□□ -0.24
MDC1-205ENST00000425072 RGPD5Q99666 1765 aa13.53□□□□□ -0.24
MDC1-205ENST00000425072 HTATSF1O43719 755 aaKnown RBP13.52□□□□□ -0.25
MDC1-205ENST00000425072 WWC1Q8IX03 1113 aa13.52□□□□□ -0.25
MDC1-205ENST00000425072 CARD10Q9BWT7 1032 aa13.52□□□□□ -0.25
MDC1-205ENST00000425072 TATP17735 454 aaPredicted RBP13.51□□□□□ -0.25
MDC1-205ENST00000425072 RTF1Q92541 710 aaKnown RBP13.51□□□□□ -0.25
MDC1-205ENST00000425072 NGLY1Q96IV0 654 aa13.51□□□□□ -0.25
MDC1-205ENST00000425072 STRN4Q9NRL3 753 aa13.51□□□□□ -0.25
MDC1-205ENST00000425072 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.51□□□□□ -0.252e-7■□□□□ 8.6
MDC1-205ENST00000425072 RRP7AQ9Y3A4 280 aaKnown RBP13.51□□□□□ -0.25
MDC1-205ENST00000425072 RGPD1P0DJD0 1748 aa13.5□□□□□ -0.25
MDC1-205ENST00000425072 SPG7Q9UQ90 795 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms