RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 TOM1L2Q6ZVM7 507 aa16.37■□□□□ 0.21
SQSTM1-203ENST00000422245 USP31Q70CQ4 1352 aa16.36■□□□□ 0.21
SQSTM1-203ENST00000422245 OVOS2A0A0G2JMS6 1433 aa16.36■□□□□ 0.21
SQSTM1-203ENST00000422245 OVOS2A0A0J9YW53 1432 aa16.36■□□□□ 0.21
SQSTM1-203ENST00000422245 OVOS2Q6IE36 1432 aa16.36■□□□□ 0.21
SQSTM1-203ENST00000422245 CD163L1Q9NR16 1453 aa16.35■□□□□ 0.21
SQSTM1-203ENST00000422245 RREB1Q92766 1687 aa16.35■□□□□ 0.21
SQSTM1-203ENST00000422245 HDGFL2Q7Z4V5 671 aaPredicted RBP16.35■□□□□ 0.21
SQSTM1-203ENST00000422245 PUS7Q96PZ0 661 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-203ENST00000422245 CAMKK2Q96RR4 588 aa16.35■□□□□ 0.21
SQSTM1-203ENST00000422245 PEAK1Q9H792 1746 aa16.34■□□□□ 0.21
SQSTM1-203ENST00000422245 RGPD5Q99666 1765 aa16.34■□□□□ 0.21
SQSTM1-203ENST00000422245 PSDA5PKW4 1024 aaPredicted RBP16.34■□□□□ 0.21
SQSTM1-203ENST00000422245 SOX12O15370 315 aa16.34■□□□□ 0.21
SQSTM1-203ENST00000422245 APBA3O96018 575 aa16.34■□□□□ 0.21
SQSTM1-203ENST00000422245 EZH2Q15910 746 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-203ENST00000422245 TMC1Q8TDI8 760 aa16.34■□□□□ 0.21
SQSTM1-203ENST00000422245 CDCA7Q9BWT1 371 aaPredicted RBP16.34■□□□□ 0.21
SQSTM1-203ENST00000422245 AXIN2Q9Y2T1 843 aa16.34■□□□□ 0.21
SQSTM1-203ENST00000422245 NINLQ9Y2I6 1382 aa16.34■□□□□ 0.21
SQSTM1-203ENST00000422245 EDC4Q6P2E9 1401 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-203ENST00000422245 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.33■□□□□ 0.2
SQSTM1-203ENST00000422245 TERF2IPQ9NYB0 399 aa16.33■□□□□ 0.2
SQSTM1-203ENST00000422245 CSB-PGBD3P0DP91 1061 aa16.32■□□□□ 0.2
SQSTM1-203ENST00000422245 DDB1Q16531 1140 aa16.32■□□□□ 0.2
SQSTM1-203ENST00000422245 NUP188Q5SRE5 1749 aa16.32■□□□□ 0.2
SQSTM1-203ENST00000422245 RGPD3A6NKT7 1758 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-203ENST00000422245 RGPD4Q7Z3J3 1758 aa16.31■□□□□ 0.2
SQSTM1-203ENST00000422245 A0A1W2PP64 1363 aa16.31■□□□□ 0.2
SQSTM1-203ENST00000422245 CCDC7Q96M83 1385 aa16.31■□□□□ 0.2
SQSTM1-203ENST00000422245 SLC24A1O60721 1099 aa16.31■□□□□ 0.2
SQSTM1-203ENST00000422245 NME9Q86XW9 330 aa16.31■□□□□ 0.2
SQSTM1-203ENST00000422245 CARD10Q9BWT7 1032 aa16.31■□□□□ 0.2
SQSTM1-203ENST00000422245 R3HDM1Q15032 1099 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-203ENST00000422245 TESK2Q96S53 571 aa16.3■□□□□ 0.2
SQSTM1-203ENST00000422245 SLC12A5Q9H2X9 1139 aa16.3■□□□□ 0.2
SQSTM1-203ENST00000422245 SBF2Q86WG5 1849 aa16.3■□□□□ 0.2
SQSTM1-203ENST00000422245 LTN1O94822 1766 aa16.3■□□□□ 0.2
SQSTM1-203ENST00000422245 BCL9O00512 1426 aa16.29■□□□□ 0.2
SQSTM1-203ENST00000422245 ST20-MTHFSA0A0A6YYL1 179 aa16.28■□□□□ 0.2
SQSTM1-203ENST00000422245 ERBB3P21860 1342 aa16.27■□□□□ 0.2
SQSTM1-203ENST00000422245 TNS2Q63HR2 1409 aa16.27■□□□□ 0.19
SQSTM1-203ENST00000422245 NBPF14Q5TI25 921 aa16.25■□□□□ 0.19
SQSTM1-203ENST00000422245 MARCH10Q8NA82 808 aaPredicted RBP16.25■□□□□ 0.19
SQSTM1-203ENST00000422245 USP47Q96K76 1375 aa16.25■□□□□ 0.19
SQSTM1-203ENST00000422245 BCL11BQ9C0K0 894 aaPredicted RBP16.24■□□□□ 0.19
SQSTM1-203ENST00000422245 PLSCR1O15162 318 aa16.23■□□□□ 0.19
SQSTM1-203ENST00000422245 NLRP2Q9NX02 1062 aa16.23■□□□□ 0.19
SQSTM1-203ENST00000422245 FAM208AQ9UK61 1670 aaKnown RBP16.23■□□□□ 0.19
SQSTM1-203ENST00000422245 ANKRD36BQ8N2N9 1353 aa16.23■□□□□ 0.19
SQSTM1-203ENST00000422245 EXOC5O00471 708 aa16.22■□□□□ 0.19
SQSTM1-203ENST00000422245 TMF1P82094 1093 aa16.22■□□□□ 0.19
SQSTM1-203ENST00000422245 ANKRD24Q8TF21 1146 aa16.21■□□□□ 0.19
SQSTM1-203ENST00000422245 COG3Q96JB2 828 aa16.21■□□□□ 0.19
SQSTM1-203ENST00000422245 NHSQ6T4R5 1651 aa16.19■□□□□ 0.18
SQSTM1-203ENST00000422245 IL2RBP14784 551 aa16.19■□□□□ 0.18
SQSTM1-203ENST00000422245 IP6K1Q92551 441 aa16.19■□□□□ 0.18
SQSTM1-203ENST00000422245 TIMELESSQ9UNS1 1208 aa16.19■□□□□ 0.18
SQSTM1-203ENST00000422245 CLSPNQ9HAW4 1339 aa16.19■□□□□ 0.18
SQSTM1-203ENST00000422245 CDCA8Q53HL2 280 aa16.18■□□□□ 0.18
SQSTM1-203ENST00000422245 RTL1A6NKG5 1358 aa16.17■□□□□ 0.18
SQSTM1-203ENST00000422245 PTF1AQ7RTS3 328 aa16.17■□□□□ 0.18
SQSTM1-203ENST00000422245 MAP3K19Q56UN5 1328 aa16.17■□□□□ 0.18
SQSTM1-203ENST00000422245 ANO8Q9HCE9 1232 aaPredicted RBP16.15■□□□□ 0.18
SQSTM1-203ENST00000422245 HOXC9P31274 260 aa16.14■□□□□ 0.17
SQSTM1-203ENST00000422245 KIF20BQ96Q89 1820 aa16.14■□□□□ 0.17
SQSTM1-203ENST00000422245 CASZ1Q86V15 1759 aa16.13■□□□□ 0.17
SQSTM1-203ENST00000422245 AMPHP49418 695 aa16.13■□□□□ 0.17
SQSTM1-203ENST00000422245 SPON1Q9HCB6 807 aa16.13■□□□□ 0.17
SQSTM1-203ENST00000422245 TXNRD1Q16881 649 aa16.12■□□□□ 0.17
SQSTM1-203ENST00000422245 PROM2Q8N271 834 aa16.12■□□□□ 0.17
SQSTM1-203ENST00000422245 LTV1Q96GA3 475 aaPredicted RBP16.12■□□□□ 0.17
SQSTM1-203ENST00000422245 MYOM1P52179 1685 aa16.11■□□□□ 0.17
SQSTM1-203ENST00000422245 BTAF1O14981 1849 aa16.11■□□□□ 0.17
SQSTM1-203ENST00000422245 FYB1O15117 783 aa16.11■□□□□ 0.17
SQSTM1-203ENST00000422245 KCNQ2O43526 872 aa16.11■□□□□ 0.17
SQSTM1-203ENST00000422245 SMG6Q86US8 1419 aaKnown RBP16.11■□□□□ 0.17
SQSTM1-203ENST00000422245 ACSBG1Q96GR2 724 aa16.1■□□□□ 0.17
SQSTM1-203ENST00000422245 GGNBP2Q9H3C7 697 aa16.1■□□□□ 0.17
SQSTM1-203ENST00000422245 STK32BQ9NY57 414 aa16.1■□□□□ 0.17
SQSTM1-203ENST00000422245 PPP1R1BQ9UD71 204 aaPredicted RBP16.09■□□□□ 0.17
SQSTM1-203ENST00000422245 RRS1Q15050 365 aaKnown RBP16.08■□□□□ 0.16
SQSTM1-203ENST00000422245 PCGF6Q9BYE7 350 aa16.08■□□□□ 0.16
SQSTM1-203ENST00000422245 KIF24Q5T7B8 1368 aa16.08■□□□□ 0.16
SQSTM1-203ENST00000422245 PAPPAQ13219 1627 aa16.08■□□□□ 0.16
SQSTM1-203ENST00000422245 RGPD2P0DJD1 1756 aa16.08■□□□□ 0.16
SQSTM1-203ENST00000422245 KAT6BQ8WYB5 2073 aa16.07■□□□□ 0.16
SQSTM1-203ENST00000422245 FBLN1P23142 703 aa16.07■□□□□ 0.16
SQSTM1-203ENST00000422245 FLT4P35916 1363 aa16.07■□□□□ 0.16
SQSTM1-203ENST00000422245 NSD3Q9BZ95 1437 aa16.07■□□□□ 0.16
SQSTM1-203ENST00000422245 MEGF6O75095 1541 aa16.07■□□□□ 0.16
SQSTM1-203ENST00000422245 SHANK3Q9BYB0 1731 aa16.06■□□□□ 0.16
SQSTM1-203ENST00000422245 SLC15A2Q16348 729 aa16.06■□□□□ 0.16
SQSTM1-203ENST00000422245 DDX54Q8TDD1 881 aaKnown RBP16.06■□□□□ 0.16
SQSTM1-203ENST00000422245 INSRP06213 1382 aa16.05■□□□□ 0.16
SQSTM1-203ENST00000422245 CGNL1Q0VF96 1302 aa16.05■□□□□ 0.16
SQSTM1-203ENST00000422245 DOT1LQ8TEK3 1739 aa16.05■□□□□ 0.16
SQSTM1-203ENST00000422245 ZCRB1Q8TBF4 217 aaKnown RBP16.04■□□□□ 0.16
SQSTM1-203ENST00000422245 CARD14Q9BXL6 1004 aa16.04■□□□□ 0.16
SQSTM1-203ENST00000422245 NBPF6Q5VWK0 638 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms