RNA–Protein interactions for RNA: ENST00000421670.3

DDX55-203, Transcript of DEAD-box helicase 55, humanhuman

TSL 1 (best) BASIC

Gene DDX55, Length 1,574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-203ENST00000421670 RGPD2P0DJD1 1756 aa21.24■□□□□ 0.99
DDX55-203ENST00000421670 RTL1A6NKG5 1358 aa21.24■□□□□ 0.99
DDX55-203ENST00000421670 FLT4P35916 1363 aa21.24■□□□□ 0.99
DDX55-203ENST00000421670 NRAPQ86VF7 1730 aa21.24■□□□□ 0.99
DDX55-203ENST00000421670 MTHFSP49914 203 aa21.23■□□□□ 0.99
DDX55-203ENST00000421670 AMPHP49418 695 aa21.23■□□□□ 0.99
DDX55-203ENST00000421670 CAMTA1Q9Y6Y1 1673 aa21.22■□□□□ 0.99
DDX55-203ENST00000421670 COL3A1P02461 1466 aaPredicted RBP21.21■□□□□ 0.99
DDX55-203ENST00000421670 FAM83GA6ND36 823 aa21.21■□□□□ 0.99
DDX55-203ENST00000421670 HOXC9P31274 260 aa21.21■□□□□ 0.99
DDX55-203ENST00000421670 KIF24Q5T7B8 1368 aa21.21■□□□□ 0.99
DDX55-203ENST00000421670 BLMP54132 1417 aaPredicted RBP21.19■□□□□ 0.98
DDX55-203ENST00000421670 MEX3CQ5U5Q3 659 aaKnown RBP21.19■□□□□ 0.98
DDX55-203ENST00000421670 MIER1Q8N108 512 aa21.19■□□□□ 0.98
DDX55-203ENST00000421670 C8orf37Q96NL8 207 aa21.19■□□□□ 0.98
DDX55-203ENST00000421670 AXIN2Q9Y2T1 843 aa21.19■□□□□ 0.98
DDX55-203ENST00000421670 FAM208AQ9UK61 1670 aaKnown RBP21.19■□□□□ 0.98
DDX55-203ENST00000421670 HSP90AB2PQ58FF8 381 aa21.19■□□□□ 0.98
DDX55-203ENST00000421670 IP6K1Q92551 441 aa21.19■□□□□ 0.98
DDX55-203ENST00000421670 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.18■□□□□ 0.98
DDX55-203ENST00000421670 COL5A2P05997 1499 aaPredicted RBP21.17■□□□□ 0.98
DDX55-203ENST00000421670 SLIT2O94813 1529 aa21.17■□□□□ 0.98
DDX55-203ENST00000421670 INSRP06213 1382 aa21.17■□□□□ 0.98
DDX55-203ENST00000421670 BTG4Q9NY30 223 aa21.16■□□□□ 0.98
DDX55-203ENST00000421670 RGPD1P0DJD0 1748 aa21.16■□□□□ 0.98
DDX55-203ENST00000421670 CCDC184Q52MB2 194 aa21.15■□□□□ 0.98
DDX55-203ENST00000421670 LTV1Q96GA3 475 aaPredicted RBP21.14■□□□□ 0.98
DDX55-203ENST00000421670 NGLY1Q96IV0 654 aa21.14■□□□□ 0.98
DDX55-203ENST00000421670 CFAP53Q96M91 514 aa21.13■□□□□ 0.97
DDX55-203ENST00000421670 ERBB3P21860 1342 aa21.13■□□□□ 0.97
DDX55-203ENST00000421670 EIF4A2Q14240 407 aaKnown RBP21.12■□□□□ 0.97
DDX55-203ENST00000421670 ANKRD24Q8TF21 1146 aa21.12■□□□□ 0.97
DDX55-203ENST00000421670 STRN4Q9NRL3 753 aa21.11■□□□□ 0.97
DDX55-203ENST00000421670 BCL9LQ86UU0 1499 aa21.11■□□□□ 0.97
DDX55-203ENST00000421670 AFF2P51816 1311 aa21.1■□□□□ 0.97
DDX55-203ENST00000421670 MRS2Q9HD23 443 aa21.1■□□□□ 0.97
DDX55-203ENST00000421670 WNK3Q9BYP7 1800 aa21.1■□□□□ 0.97
DDX55-203ENST00000421670 DIAPH1O60610 1272 aaKnown RBP21.09■□□□□ 0.97
DDX55-203ENST00000421670 FNBP4Q8N3X1 1017 aaPredicted RBP21.09■□□□□ 0.97
DDX55-203ENST00000421670 CSB-PGBD3P0DP91 1061 aa21.08■□□□□ 0.97
DDX55-203ENST00000421670 WDR17Q8IZU2 1322 aa21.08■□□□□ 0.96
DDX55-203ENST00000421670 IL13P35225 146 aa21.07■□□□□ 0.96
DDX55-203ENST00000421670 EVA1CP58658 441 aa21.06■□□□□ 0.96
DDX55-203ENST00000421670 LARP1Q6PKG0 1096 aaKnown RBP21.06■□□□□ 0.96
DDX55-203ENST00000421670 USP21Q9UK80 565 aa21.06■□□□□ 0.96
DDX55-203ENST00000421670 CCER2I3L3R5 266 aa21.06■□□□□ 0.96
DDX55-203ENST00000421670 CRB1P82279 1406 aa21.06■□□□□ 0.96
DDX55-203ENST00000421670 U2SURPO15042 1029 aaKnown RBP21.05■□□□□ 0.96
DDX55-203ENST00000421670 UNC5CLQ8IV45 518 aa21.05■□□□□ 0.96
DDX55-203ENST00000421670 USHBP1Q8N6Y0 703 aa21.04■□□□□ 0.96
DDX55-203ENST00000421670 NBPF6Q5VWK0 638 aa21.03■□□□□ 0.96
DDX55-203ENST00000421670 TOM1L2Q6ZVM7 507 aa21.03■□□□□ 0.96
DDX55-203ENST00000421670 NBPF4Q96M43 638 aa21.03■□□□□ 0.96
DDX55-203ENST00000421670 EYA1Q99502 592 aa21.03■□□□□ 0.96
DDX55-203ENST00000421670 NLRP2Q9NX02 1062 aa21.03■□□□□ 0.96
DDX55-203ENST00000421670 IGSF1Q8N6C5 1336 aa21.02■□□□□ 0.96
DDX55-203ENST00000421670 PARP4Q9UKK3 1724 aaKnown RBP21.01■□□□□ 0.95
DDX55-203ENST00000421670 NCAPD2Q15021 1401 aa21.01■□□□□ 0.95
DDX55-203ENST00000421670 GLI3P10071 1580 aa21.01■□□□□ 0.95
DDX55-203ENST00000421670 USP35Q9P2H5 1018 aa21.01■□□□□ 0.95
DDX55-203ENST00000421670 NUDCQ9Y266 331 aa21.01■□□□□ 0.95
DDX55-203ENST00000421670 AEBP1Q8IUX7 1158 aa21■□□□□ 0.95
DDX55-203ENST00000421670 CCDC9Q9Y3X0 531 aaKnown RBP21■□□□□ 0.95
DDX55-203ENST00000421670 ATRNO75882 1429 aa21■□□□□ 0.95
DDX55-203ENST00000421670 HMOX1P09601 288 aa20.99■□□□□ 0.95
DDX55-203ENST00000421670 U2AF1L5P0DN76 240 aaPredicted RBP20.99■□□□□ 0.95
DDX55-203ENST00000421670 U2AF1Q01081 240 aaKnown RBP eCLIP20.99■□□□□ 0.95
DDX55-203ENST00000421670 WDR43Q15061 677 aaKnown RBP eCLIP20.99■□□□□ 0.95
DDX55-203ENST00000421670 VPS72Q15906 364 aa20.98■□□□□ 0.95
DDX55-203ENST00000421670 PNISRQ8TF01 805 aaKnown RBP20.98■□□□□ 0.95
DDX55-203ENST00000421670 CARD10Q9BWT7 1032 aa20.98■□□□□ 0.95
DDX55-203ENST00000421670 SPATA31A5Q5VU36 1347 aa20.98■□□□□ 0.95
DDX55-203ENST00000421670 SPATA31A7Q8IWB4 1347 aa20.98■□□□□ 0.95
DDX55-203ENST00000421670 SULT6B1Q6IMI4 303 aa20.97■□□□□ 0.95
DDX55-203ENST00000421670 KDRP35968 1356 aa20.97■□□□□ 0.95
DDX55-203ENST00000421670 SPATA31A1Q5TZJ5 1347 aa20.97■□□□□ 0.95
DDX55-203ENST00000421670 MEGF6O75095 1541 aa20.97■□□□□ 0.95
DDX55-203ENST00000421670 PHF23Q9BUL5 403 aaPredicted RBP20.96■□□□□ 0.95
DDX55-203ENST00000421670 SHANK3Q9BYB0 1731 aa20.95■□□□□ 0.94
DDX55-203ENST00000421670 ZNF772Q68DY9 489 aaPredicted RBP20.95■□□□□ 0.94
DDX55-203ENST00000421670 FAM9BQ8IZU0 186 aa20.95■□□□□ 0.94
DDX55-203ENST00000421670 TRPC5Q9UL62 973 aaPredicted RBP20.95■□□□□ 0.94
DDX55-203ENST00000421670 ADAMTS8Q9UP79 889 aa20.95■□□□□ 0.94
DDX55-203ENST00000421670 PKD1L3Q7Z443 1732 aa20.95■□□□□ 0.94
DDX55-203ENST00000421670 QTRT2Q9H974 415 aaKnown RBP20.94■□□□□ 0.94
DDX55-203ENST00000421670 RGS17Q9UGC6 210 aaPredicted RBP20.94■□□□□ 0.94
DDX55-203ENST00000421670 LRRC37A3O60309 1634 aa20.94■□□□□ 0.94
DDX55-203ENST00000421670 RSPH6AQ9H0K4 717 aa20.93■□□□□ 0.94
DDX55-203ENST00000421670 THSD7AQ9UPZ6 1657 aa20.93■□□□□ 0.94
DDX55-203ENST00000421670 TCP11L2Q8N4U5 519 aa20.93■□□□□ 0.94
DDX55-203ENST00000421670 DISP2A7MBM2 1401 aa20.93■□□□□ 0.94
DDX55-203ENST00000421670 GJD4Q96KN9 370 aaPredicted RBP20.92■□□□□ 0.94
DDX55-203ENST00000421670 DLG5Q8TDM6 1919 aa20.92■□□□□ 0.94
DDX55-203ENST00000421670 PRKAR2BP31323 418 aa20.9■□□□□ 0.94
DDX55-203ENST00000421670 FAM98CQ17RN3 349 aaKnown RBP20.9■□□□□ 0.94
DDX55-203ENST00000421670 CCDC146Q8IYE0 955 aa20.9■□□□□ 0.94
DDX55-203ENST00000421670 VIRMAQ69YN4 1812 aaKnown RBP20.9■□□□□ 0.94
DDX55-203ENST00000421670 OVOS2A0A0G2JMS6 1433 aa20.9■□□□□ 0.94
DDX55-203ENST00000421670 RAPGEF4Q8WZA2 1011 aa20.89■□□□□ 0.94
DDX55-203ENST00000421670 THRAP3Q9Y2W1 955 aaKnown RBP20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms