RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 PANK3Q9H999 370 aa25.78■■□□□ 1.72
PTCD3-204ENST00000418628 RBM6P78332 1123 aaKnown RBP25.77■■□□□ 1.72
PTCD3-204ENST00000418628 COG3Q96JB2 828 aa25.76■■□□□ 1.71
PTCD3-204ENST00000418628 CGNL1Q0VF96 1302 aa25.76■■□□□ 1.71
PTCD3-204ENST00000418628 NSD2O96028 1365 aa25.76■■□□□ 1.71
PTCD3-204ENST00000418628 PARP4Q9UKK3 1724 aaKnown RBP25.76■■□□□ 1.71
PTCD3-204ENST00000418628 GGNBP2Q9H3C7 697 aa25.75■■□□□ 1.71
PTCD3-204ENST00000418628 RXRBP28702 533 aa25.74■■□□□ 1.71
PTCD3-204ENST00000418628 GJD4Q96KN9 370 aaPredicted RBP25.74■■□□□ 1.71
PTCD3-204ENST00000418628 BLMP54132 1417 aaPredicted RBP25.71■■□□□ 1.71
PTCD3-204ENST00000418628 RTL1A6NKG5 1358 aa25.71■■□□□ 1.71
PTCD3-204ENST00000418628 SPATA31A5Q5VU36 1347 aa25.71■■□□□ 1.71
PTCD3-204ENST00000418628 SPATA31A7Q8IWB4 1347 aa25.71■■□□□ 1.71
PTCD3-204ENST00000418628 SOX12O15370 315 aa25.71■■□□□ 1.71
PTCD3-204ENST00000418628 PER1O15534 1290 aaPredicted RBP25.7■■□□□ 1.7
PTCD3-204ENST00000418628 AXIN2Q9Y2T1 843 aa25.7■■□□□ 1.7
PTCD3-204ENST00000418628 CRB1P82279 1406 aa25.7■■□□□ 1.7
PTCD3-204ENST00000418628 LRRC37A3O60309 1634 aa25.68■■□□□ 1.7
PTCD3-204ENST00000418628 KIF24Q5T7B8 1368 aa25.68■■□□□ 1.7
PTCD3-204ENST00000418628 MAP3K19Q56UN5 1328 aa25.67■■□□□ 1.7
PTCD3-204ENST00000418628 SPATA31A1Q5TZJ5 1347 aa25.67■■□□□ 1.7
PTCD3-204ENST00000418628 AMER1Q5JTC6 1135 aaPredicted RBP25.67■■□□□ 1.7
PTCD3-204ENST00000418628 SMG6Q86US8 1419 aaKnown RBP25.67■■□□□ 1.7
PTCD3-204ENST00000418628 ONECUT3O60422 494 aaPredicted RBP25.66■■□□□ 1.7
PTCD3-204ENST00000418628 NPC1L1Q9UHC9 1359 aa25.66■■□□□ 1.7
PTCD3-204ENST00000418628 WDR17Q8IZU2 1322 aa25.65■■□□□ 1.7
PTCD3-204ENST00000418628 ERBB3P21860 1342 aa25.64■■□□□ 1.7
PTCD3-204ENST00000418628 FBLN1P23142 703 aa25.64■■□□□ 1.7
PTCD3-204ENST00000418628 LARP1Q6PKG0 1096 aaKnown RBP25.64■■□□□ 1.7
PTCD3-204ENST00000418628 STRN4Q9NRL3 753 aa25.63■■□□□ 1.69
PTCD3-204ENST00000418628 ZBTB7CA1YPR0 619 aa25.62■■□□□ 1.69
PTCD3-204ENST00000418628 IP6K1Q92551 441 aa25.62■■□□□ 1.69
PTCD3-204ENST00000418628 KNSTRNQ9Y448 316 aa25.62■■□□□ 1.69
PTCD3-204ENST00000418628 EP400Q96L91 3159 aa25.61■■□□□ 1.69
PTCD3-204ENST00000418628 SHANK3Q9BYB0 1731 aa25.6■■□□□ 1.69
PTCD3-204ENST00000418628 FLT4P35916 1363 aa25.6■■□□□ 1.69
PTCD3-204ENST00000418628 HOXC9P31274 260 aa25.6■■□□□ 1.69
PTCD3-204ENST00000418628 RRS1Q15050 365 aaKnown RBP25.6■■□□□ 1.69
PTCD3-204ENST00000418628 DISP2A7MBM2 1401 aa25.6■■□□□ 1.69
PTCD3-204ENST00000418628 EVA1CP58658 441 aa25.58■■□□□ 1.69
PTCD3-204ENST00000418628 BARGINQ6ZT62 677 aa25.58■■□□□ 1.69
PTCD3-204ENST00000418628 SBF2Q86WG5 1849 aa25.58■■□□□ 1.68
PTCD3-204ENST00000418628 CCDC9Q9Y3X0 531 aaKnown RBP25.57■■□□□ 1.68
PTCD3-204ENST00000418628 RGPD1P0DJD0 1748 aa25.57■■□□□ 1.68
PTCD3-204ENST00000418628 INSRP06213 1382 aa25.56■■□□□ 1.68
PTCD3-204ENST00000418628 THRAP3Q9Y2W1 955 aaKnown RBP25.56■■□□□ 1.68
PTCD3-204ENST00000418628 EMILIN1Q9Y6C2 1016 aa25.55■■□□□ 1.68
PTCD3-204ENST00000418628 NCAPD2Q15021 1401 aa25.54■■□□□ 1.68
PTCD3-204ENST00000418628 FAM98CQ17RN3 349 aaKnown RBP25.54■■□□□ 1.68
PTCD3-204ENST00000418628 TCP11L2Q8N4U5 519 aa25.54■■□□□ 1.68
PTCD3-204ENST00000418628 CARD10Q9BWT7 1032 aa25.54■■□□□ 1.68
PTCD3-204ENST00000418628 SOCS7O14512 581 aa25.53■■□□□ 1.68
PTCD3-204ENST00000418628 SEPT12Q8IYM1 358 aa25.53■■□□□ 1.68
PTCD3-204ENST00000418628 ANKRD24Q8TF21 1146 aa25.53■■□□□ 1.68
PTCD3-204ENST00000418628 POLKQ9UBT6 870 aa25.53■■□□□ 1.68
PTCD3-204ENST00000418628 AMPHP49418 695 aa25.52■■□□□ 1.68
PTCD3-204ENST00000418628 PKD1L3Q7Z443 1732 aa25.51■■□□□ 1.68
PTCD3-204ENST00000418628 TOM1L2Q6ZVM7 507 aa25.51■■□□□ 1.67
PTCD3-204ENST00000418628 TNS1Q9HBL0 1735 aaKnown RBP25.51■■□□□ 1.67
PTCD3-204ENST00000418628 MORC1Q86VD1 984 aa25.49■■□□□ 1.67
PTCD3-204ENST00000418628 USP35Q9P2H5 1018 aa25.49■■□□□ 1.67
PTCD3-204ENST00000418628 HSP90AB2PQ58FF8 381 aa25.48■■□□□ 1.67
PTCD3-204ENST00000418628 CSB-PGBD3P0DP91 1061 aa25.47■■□□□ 1.67
PTCD3-204ENST00000418628 TNS2Q63HR2 1409 aa25.46■■□□□ 1.67
PTCD3-204ENST00000418628 COL3A1P02461 1466 aaPredicted RBP25.45■■□□□ 1.66
PTCD3-204ENST00000418628 TNNT2P45379 298 aaPredicted RBP25.44■■□□□ 1.66
PTCD3-204ENST00000418628 CC2D1BQ5T0F9 858 aaKnown RBP25.44■■□□□ 1.66
PTCD3-204ENST00000418628 MEGF6O75095 1541 aa25.43■■□□□ 1.66
PTCD3-204ENST00000418628 KRT27Q7Z3Y8 459 aa25.42■■□□□ 1.66
PTCD3-204ENST00000418628 CDCA7Q9BWT1 371 aaPredicted RBP25.42■■□□□ 1.66
PTCD3-204ENST00000418628 NLRP2Q9NX02 1062 aa25.42■■□□□ 1.66
PTCD3-204ENST00000418628 LTV1Q96GA3 475 aaPredicted RBP25.41■■□□□ 1.66
PTCD3-204ENST00000418628 PARD3Q8TEW0 1356 aa25.4■■□□□ 1.66
PTCD3-204ENST00000418628 OVOS2A0A0G2JMS6 1433 aa25.39■■□□□ 1.66
PTCD3-204ENST00000418628 NBPF6Q5VWK0 638 aa25.39■■□□□ 1.66
PTCD3-204ENST00000418628 NBPF4Q96M43 638 aa25.39■■□□□ 1.66
PTCD3-204ENST00000418628 VIRMAQ69YN4 1812 aaKnown RBP25.39■■□□□ 1.65
PTCD3-204ENST00000418628 NHSQ6T4R5 1651 aa25.38■■□□□ 1.65
PTCD3-204ENST00000418628 BCL9O00512 1426 aa25.37■■□□□ 1.65
PTCD3-204ENST00000418628 A0A0G2JS52 829 aa25.37■■□□□ 1.65
PTCD3-204ENST00000418628 MYT1Q01538 1121 aa25.37■■□□□ 1.65
PTCD3-204ENST00000418628 RGPD3A6NKT7 1758 aaPredicted RBP25.36■■□□□ 1.65
PTCD3-204ENST00000418628 RGPD4Q7Z3J3 1758 aa25.36■■□□□ 1.65
PTCD3-204ENST00000418628 PPM1GO15355 546 aaPredicted RBP25.36■■□□□ 1.65
PTCD3-204ENST00000418628 EIF4A2Q14240 407 aaKnown RBP25.36■■□□□ 1.65
PTCD3-204ENST00000418628 UPF1Q92900 1129 aaKnown RBP eCLIP25.36■■□□□ 1.65
PTCD3-204ENST00000418628 KAT6BQ8WYB5 2073 aa25.36■■□□□ 1.65
PTCD3-204ENST00000418628 DOT1LQ8TEK3 1739 aa25.35■■□□□ 1.65
PTCD3-204ENST00000418628 IL2RBP14784 551 aa25.35■■□□□ 1.65
PTCD3-204ENST00000418628 PLEKHG2Q9H7P9 1386 aa25.34■■□□□ 1.65
PTCD3-204ENST00000418628 DDX10Q13206 875 aaKnown RBP25.34■■□□□ 1.65
PTCD3-204ENST00000418628 IGSF1Q8N6C5 1336 aa25.34■■□□□ 1.65
PTCD3-204ENST00000418628 DDB1Q16531 1140 aa25.33■■□□□ 1.65
PTCD3-204ENST00000418628 MTHFSP49914 203 aa25.32■■□□□ 1.64
PTCD3-204ENST00000418628 TOGARAM1Q9Y4F4 1720 aa25.32■■□□□ 1.64
PTCD3-204ENST00000418628 ITGB4P16144 1822 aa25.31■■□□□ 1.64
PTCD3-204ENST00000418628 EYA1Q99502 592 aa25.31■■□□□ 1.64
PTCD3-204ENST00000418628 ZNF316A6NFI3 1004 aaPredicted RBP25.3■■□□□ 1.64
PTCD3-204ENST00000418628 USHBP1Q8N6Y0 703 aa25.3■■□□□ 1.64
PTCD3-204ENST00000418628 BTAF1O14981 1849 aa25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 425.9 ms