RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 BLMP54132 1417 aaPredicted RBP26.74■■□□□ 1.87
SF3A1-202ENST00000411423 SLC24A1O60721 1099 aa26.74■■□□□ 1.87
SF3A1-202ENST00000411423 BARGINQ6ZT62 677 aa26.74■■□□□ 1.87
SF3A1-202ENST00000411423 ANKRD36BQ8N2N9 1353 aa26.73■■□□□ 1.87
SF3A1-202ENST00000411423 TCP11L2Q8N4U5 519 aa26.73■■□□□ 1.87
SF3A1-202ENST00000411423 CRB1P82279 1406 aa26.73■■□□□ 1.87
SF3A1-202ENST00000411423 MYOM1P52179 1685 aa26.72■■□□□ 1.87
SF3A1-202ENST00000411423 CCDC125Q86Z20 511 aa26.71■■□□□ 1.87
SF3A1-202ENST00000411423 DEFB132Q7Z7B7 95 aa26.69■■□□□ 1.86
SF3A1-202ENST00000411423 WDR17Q8IZU2 1322 aa26.68■■□□□ 1.86
SF3A1-202ENST00000411423 LTN1O94822 1766 aa26.68■■□□□ 1.86
SF3A1-202ENST00000411423 THRAP3Q9Y2W1 955 aaKnown RBP26.67■■□□□ 1.86
SF3A1-202ENST00000411423 ABCC6O95255 1503 aa26.66■■□□□ 1.86
SF3A1-202ENST00000411423 PARP4Q9UKK3 1724 aaKnown RBP26.66■■□□□ 1.86
SF3A1-202ENST00000411423 HSPA5P11021 654 aaKnown RBP26.65■■□□□ 1.86
SF3A1-202ENST00000411423 FBLN1P23142 703 aa26.65■■□□□ 1.86
SF3A1-202ENST00000411423 TOM1L2Q6ZVM7 507 aa26.65■■□□□ 1.86
SF3A1-202ENST00000411423 WNK3Q9BYP7 1800 aa26.64■■□□□ 1.85
SF3A1-202ENST00000411423 LRRC37A3O60309 1634 aa26.62■■□□□ 1.85
SF3A1-202ENST00000411423 CDCA8Q53HL2 280 aa26.62■■□□□ 1.85
SF3A1-202ENST00000411423 CARD14Q9BXL6 1004 aa26.62■■□□□ 1.85
SF3A1-202ENST00000411423 FYB1O15117 783 aa26.61■■□□□ 1.85
SF3A1-202ENST00000411423 TNS1Q9HBL0 1735 aaKnown RBP26.61■■□□□ 1.85
SF3A1-202ENST00000411423 GGNBP2Q9H3C7 697 aa26.6■■□□□ 1.85
SF3A1-202ENST00000411423 DISP2A7MBM2 1401 aa26.59■■□□□ 1.85
SF3A1-202ENST00000411423 CSB-PGBD3P0DP91 1061 aa26.59■■□□□ 1.85
SF3A1-202ENST00000411423 COG3Q96JB2 828 aa26.59■■□□□ 1.85
SF3A1-202ENST00000411423 CARD10Q9BWT7 1032 aa26.59■■□□□ 1.85
SF3A1-202ENST00000411423 ERBB3P21860 1342 aa26.59■■□□□ 1.85
SF3A1-202ENST00000411423 RGPD1P0DJD0 1748 aa26.59■■□□□ 1.85
SF3A1-202ENST00000411423 EIF4G2P78344 907 aaKnown RBP eCLIP26.58■■□□□ 1.85
SF3A1-202ENST00000411423 PDE3BQ13370 1112 aa26.57■■□□□ 1.84
SF3A1-202ENST00000411423 PEAK1Q9H792 1746 aa26.56■■□□□ 1.84
SF3A1-202ENST00000411423 SF3B2Q13435 895 aaKnown RBP26.56■■□□□ 1.84
SF3A1-202ENST00000411423 MAP3K19Q56UN5 1328 aa26.56■■□□□ 1.84
SF3A1-202ENST00000411423 KIF20BQ96Q89 1820 aa26.55■■□□□ 1.84
SF3A1-202ENST00000411423 TRIM37O94972 964 aa26.55■■□□□ 1.84
SF3A1-202ENST00000411423 FAM196AQ6ZSG2 479 aa26.55■■□□□ 1.84
SF3A1-202ENST00000411423 ANKRD24Q8TF21 1146 aa26.55■■□□□ 1.84
SF3A1-202ENST00000411423 NSD3Q9BZ95 1437 aa26.55■■□□□ 1.84
SF3A1-202ENST00000411423 C11orf95C9JLR9 678 aaPredicted RBP26.53■■□□□ 1.84
SF3A1-202ENST00000411423 IP6K1Q92551 441 aa26.53■■□□□ 1.84
SF3A1-202ENST00000411423 EN1Q05925 392 aaPredicted RBP26.52■■□□□ 1.84
SF3A1-202ENST00000411423 POLR3GLQ9BT43 218 aa26.52■■□□□ 1.84
SF3A1-202ENST00000411423 CCDC7Q96M83 1385 aa26.51■■□□□ 1.83
SF3A1-202ENST00000411423 DDB1Q16531 1140 aa26.51■■□□□ 1.83
SF3A1-202ENST00000411423 HOXC9P31274 260 aa26.5■■□□□ 1.83
SF3A1-202ENST00000411423 BAG6P46379 1132 aa26.5■■□□□ 1.83
SF3A1-202ENST00000411423 RRS1Q15050 365 aaKnown RBP26.5■■□□□ 1.83
SF3A1-202ENST00000411423 MARCH10Q8NA82 808 aaPredicted RBP26.49■■□□□ 1.83
SF3A1-202ENST00000411423 NLRP2Q9NX02 1062 aa26.49■■□□□ 1.83
SF3A1-202ENST00000411423 LTV1Q96GA3 475 aaPredicted RBP26.48■■□□□ 1.83
SF3A1-202ENST00000411423 OVOS2A0A0G2JMS6 1433 aa26.47■■□□□ 1.83
SF3A1-202ENST00000411423 EZH2Q15910 746 aaKnown RBP26.46■■□□□ 1.83
SF3A1-202ENST00000411423 PTF1AQ7RTS3 328 aa26.46■■□□□ 1.83
SF3A1-202ENST00000411423 CDCA7Q9BWT1 371 aaPredicted RBP26.46■■□□□ 1.83
SF3A1-202ENST00000411423 SBF2Q86WG5 1849 aa26.45■■□□□ 1.82
SF3A1-202ENST00000411423 RGPD2P0DJD1 1756 aa26.45■■□□□ 1.82
SF3A1-202ENST00000411423 AMPHP49418 695 aa26.44■■□□□ 1.82
SF3A1-202ENST00000411423 CAMKK2Q96RR4 588 aa26.44■■□□□ 1.82
SF3A1-202ENST00000411423 TNS2Q63HR2 1409 aa26.44■■□□□ 1.82
SF3A1-202ENST00000411423 APBA3O96018 575 aa26.43■■□□□ 1.82
SF3A1-202ENST00000411423 FAM208AQ9UK61 1670 aaKnown RBP26.43■■□□□ 1.82
SF3A1-202ENST00000411423 RTL1A6NKG5 1358 aa26.42■■□□□ 1.82
SF3A1-202ENST00000411423 SRCAPQ6ZRS2 3230 aa26.41■■□□□ 1.82
SF3A1-202ENST00000411423 EXOC5O00471 708 aa26.4■■□□□ 1.82
SF3A1-202ENST00000411423 IL2RBP14784 551 aa26.4■■□□□ 1.82
SF3A1-202ENST00000411423 PANK3Q9H999 370 aa26.39■■□□□ 1.82
SF3A1-202ENST00000411423 BCL9O00512 1426 aa26.39■■□□□ 1.81
SF3A1-202ENST00000411423 HSP90AB2PQ58FF8 381 aa26.38■■□□□ 1.81
SF3A1-202ENST00000411423 EMILIN1Q9Y6C2 1016 aa26.38■■□□□ 1.81
SF3A1-202ENST00000411423 RREB1Q92766 1687 aa26.38■■□□□ 1.81
SF3A1-202ENST00000411423 CGNL1Q0VF96 1302 aa26.37■■□□□ 1.81
SF3A1-202ENST00000411423 PSDA5PKW4 1024 aaPredicted RBP26.35■■□□□ 1.81
SF3A1-202ENST00000411423 NBPF6Q5VWK0 638 aa26.35■■□□□ 1.81
SF3A1-202ENST00000411423 NBPF4Q96M43 638 aa26.35■■□□□ 1.81
SF3A1-202ENST00000411423 NUP188Q5SRE5 1749 aa26.34■■□□□ 1.81
SF3A1-202ENST00000411423 ANKRD26Q9UPS8 1709 aa26.34■■□□□ 1.81
SF3A1-202ENST00000411423 KIF7Q2M1P5 1343 aa26.34■■□□□ 1.81
SF3A1-202ENST00000411423 MEGF6O75095 1541 aa26.34■■□□□ 1.81
SF3A1-202ENST00000411423 INSRP06213 1382 aa26.33■■□□□ 1.81
SF3A1-202ENST00000411423 FLT4P35916 1363 aa26.33■■□□□ 1.81
SF3A1-202ENST00000411423 USHBP1Q8N6Y0 703 aa26.33■■□□□ 1.81
SF3A1-202ENST00000411423 BCL11BQ9C0K0 894 aaPredicted RBP26.32■■□□□ 1.8
SF3A1-202ENST00000411423 SHANK3Q9BYB0 1731 aa26.31■■□□□ 1.8
SF3A1-202ENST00000411423 KCNQ2O43526 872 aa26.31■■□□□ 1.8
SF3A1-202ENST00000411423 PARD3Q8TEW0 1356 aa26.31■■□□□ 1.8
SF3A1-202ENST00000411423 KIF24Q5T7B8 1368 aa26.3■■□□□ 1.8
SF3A1-202ENST00000411423 MAP2P11137 1827 aaKnown RBP26.29■■□□□ 1.8
SF3A1-202ENST00000411423 NHSQ6T4R5 1651 aa26.28■■□□□ 1.8
SF3A1-202ENST00000411423 ACSBG1Q96GR2 724 aa26.28■■□□□ 1.8
SF3A1-202ENST00000411423 POLKQ9UBT6 870 aa26.28■■□□□ 1.8
SF3A1-202ENST00000411423 TNNT2P45379 298 aaPredicted RBP26.27■■□□□ 1.8
SF3A1-202ENST00000411423 R3HDM1Q15032 1099 aaKnown RBP26.27■■□□□ 1.8
SF3A1-202ENST00000411423 RGPD3A6NKT7 1758 aaPredicted RBP26.27■■□□□ 1.8
SF3A1-202ENST00000411423 RGPD4Q7Z3J3 1758 aa26.27■■□□□ 1.8
SF3A1-202ENST00000411423 PPM1GO15355 546 aaPredicted RBP26.26■■□□□ 1.79
SF3A1-202ENST00000411423 PROM2Q8N271 834 aa26.26■■□□□ 1.79
SF3A1-202ENST00000411423 SMG6Q86US8 1419 aaKnown RBP26.25■■□□□ 1.79
SF3A1-202ENST00000411423 PLSCR1O15162 318 aa26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms