RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 FAM177BA6PVY3 158 aa11.28□□□□□ -0.6
LIG4-202ENST00000405925 HSCBQ8IWL3 235 aa11.28□□□□□ -0.6
LIG4-202ENST00000405925 C1orf115Q9H7X2 142 aa11.28□□□□□ -0.6
LIG4-202ENST00000405925 MAP3K19Q56UN5 1328 aa11.28□□□□□ -0.6
LIG4-202ENST00000405925 DUSP27Q5VZP5 1158 aa11.28□□□□□ -0.6
LIG4-202ENST00000405925 RILPL2Q969X0 211 aa11.28□□□□□ -0.6
LIG4-202ENST00000405925 GNAI3P08754 354 aa11.27□□□□□ -0.6
LIG4-202ENST00000405925 TAF7Q15545 349 aaPredicted RBP11.27□□□□□ -0.6
LIG4-202ENST00000405925 TET3O43151 1660 aa11.27□□□□□ -0.6
LIG4-202ENST00000405925 FANCIQ9NVI1 1328 aa11.27□□□□□ -0.6
LIG4-202ENST00000405925 PLEKHG1Q9ULL1 1385 aa11.27□□□□□ -0.61
LIG4-202ENST00000405925 SPRYD3Q8NCJ5 442 aa11.27□□□□□ -0.61
LIG4-202ENST00000405925 LRRC59Q96AG4 307 aaKnown RBP11.27□□□□□ -0.61
LIG4-202ENST00000405925 IFT57Q9NWB7 429 aa11.27□□□□□ -0.61
LIG4-202ENST00000405925 LMTK3Q96Q04 1460 aa11.27□□□□□ -0.61
LIG4-202ENST00000405925 SSH1Q8WYL5 1049 aa11.27□□□□□ -0.61
LIG4-202ENST00000405925 PHF23Q9BUL5 403 aaPredicted RBP11.27□□□□□ -0.61
LIG4-202ENST00000405925 G3BP1Q13283 466 aaKnown RBP eCLIP11.26□□□□□ -0.61
LIG4-202ENST00000405925 DDX17Q92841 729 aaKnown RBP11.26□□□□□ -0.61
LIG4-202ENST00000405925 IQGAP3Q86VI3 1631 aa11.26□□□□□ -0.61
LIG4-202ENST00000405925 POLR3AO14802 1390 aaPredicted RBP11.26□□□□□ -0.61
LIG4-202ENST00000405925 FLT4P35916 1363 aa11.26□□□□□ -0.61
LIG4-202ENST00000405925 NLRP1Q9C000 1473 aa11.26□□□□□ -0.61
LIG4-202ENST00000405925 TPRNQ4KMQ1 711 aa11.26□□□□□ -0.61
LIG4-202ENST00000405925 SIRT1Q96EB6 747 aa11.26□□□□□ -0.61
LIG4-202ENST00000405925 SBNO2Q9Y2G9 1366 aa11.26□□□□□ -0.61
LIG4-202ENST00000405925 MYOM2P54296 1465 aa11.26□□□□□ -0.61
LIG4-202ENST00000405925 PIK3C2GO75747 1445 aa11.25□□□□□ -0.61
LIG4-202ENST00000405925 GOLGA6L22H0YM25 854 aa11.25□□□□□ -0.61
LIG4-202ENST00000405925 EDC4Q6P2E9 1401 aaKnown RBP11.25□□□□□ -0.61
LIG4-202ENST00000405925 PLEKHG3A1L390 1219 aa11.25□□□□□ -0.61
LIG4-202ENST00000405925 IFIT2P09913 472 aaKnown RBP11.25□□□□□ -0.61
LIG4-202ENST00000405925 AAMPQ13685 434 aa11.25□□□□□ -0.61
LIG4-202ENST00000405925 TMOD3Q9NYL9 352 aa11.25□□□□□ -0.61
LIG4-202ENST00000405925 G3V3G9 751 aa11.24□□□□□ -0.61
LIG4-202ENST00000405925 RARSP54136 660 aaKnown RBP11.24□□□□□ -0.61
LIG4-202ENST00000405925 DCAF8Q5TAQ9 597 aa11.24□□□□□ -0.61
LIG4-202ENST00000405925 KIF6Q6ZMV9 814 aa11.24□□□□□ -0.61
LIG4-202ENST00000405925 SRCIN1Q9C0H9 1055 aa11.24□□□□□ -0.61
LIG4-202ENST00000405925 ROBO2Q9HCK4 1378 aa11.24□□□□□ -0.61
LIG4-202ENST00000405925 EXOC5O00471 708 aa11.24□□□□□ -0.61
LIG4-202ENST00000405925 TSHZ2Q9NRE2 1034 aa11.24□□□□□ -0.61
LIG4-202ENST00000405925 PDE4AP27815 886 aa11.24□□□□□ -0.61
LIG4-202ENST00000405925 IFNL2Q8IZJ0 200 aa11.24□□□□□ -0.61
LIG4-202ENST00000405925 SLAIN2Q9P270 581 aa11.24□□□□□ -0.61
LIG4-202ENST00000405925 NOP58Q9Y2X3 529 aaKnown RBP11.24□□□□□ -0.61
LIG4-202ENST00000405925 NPHP4O75161 1426 aaPredicted RBP11.23□□□□□ -0.61
LIG4-202ENST00000405925 SURF6O75683 361 aaKnown RBP11.23□□□□□ -0.61
LIG4-202ENST00000405925 EYA1Q99502 592 aa11.23□□□□□ -0.61
LIG4-202ENST00000405925 MVPQ14764 893 aaKnown RBP11.23□□□□□ -0.61
LIG4-202ENST00000405925 FAM161AQ3B820 660 aa11.23□□□□□ -0.61
LIG4-202ENST00000405925 ANP32BQ92688 251 aaKnown RBP11.23□□□□□ -0.61
LIG4-202ENST00000405925 UNC13BO14795 1591 aa11.23□□□□□ -0.61
LIG4-202ENST00000405925 TMEM94Q12767 1356 aa11.23□□□□□ -0.61
LIG4-202ENST00000405925 NCLP19338 710 aaKnown RBP11.23□□□□□ -0.61
LIG4-202ENST00000405925 KAT6BQ8WYB5 2073 aa11.23□□□□□ -0.61
LIG4-202ENST00000405925 CROCC2H7BZ55 1655 aa11.22□□□□□ -0.61
LIG4-202ENST00000405925 CCT4P50991 539 aaKnown RBP11.22□□□□□ -0.61
LIG4-202ENST00000405925 NPC1L1Q9UHC9 1359 aa11.22□□□□□ -0.61
LIG4-202ENST00000405925 GNAI2P04899 355 aa11.22□□□□□ -0.61
LIG4-202ENST00000405925 HOXC9P31274 260 aa11.22□□□□□ -0.61
LIG4-202ENST00000405925 HSP90AB4PQ58FF6 505 aa11.22□□□□□ -0.61
LIG4-202ENST00000405925 PHACTR3Q96KR7 559 aa11.22□□□□□ -0.61
LIG4-202ENST00000405925 A2ML1A8K2U0 1454 aa11.22□□□□□ -0.61
LIG4-202ENST00000405925 KIF1BO60333 1816 aa11.22□□□□□ -0.61
LIG4-202ENST00000405925 TMEM57Q8N5G2 664 aa11.22□□□□□ -0.61
LIG4-202ENST00000405925 MBIPQ9NS73 344 aa11.22□□□□□ -0.61
LIG4-202ENST00000405925 C20orf194Q5TEA3 1177 aa11.21□□□□□ -0.61
LIG4-202ENST00000405925 NKTRP30414 1462 aaKnown RBP11.21□□□□□ -0.61
LIG4-202ENST00000405925 DIP2CQ9Y2E4 1556 aa11.21□□□□□ -0.61
LIG4-202ENST00000405925 ZFYVE9O95405 1425 aa11.21□□□□□ -0.62
LIG4-202ENST00000405925 IP6K1Q92551 441 aa11.21□□□□□ -0.62
LIG4-202ENST00000405925 C8orf37Q96NL8 207 aa11.21□□□□□ -0.62
LIG4-202ENST00000405925 CLTCL1P53675 1640 aa11.21□□□□□ -0.62
LIG4-202ENST00000405925 NEUROD6Q96NK8 337 aa11.2□□□□□ -0.62
LIG4-202ENST00000405925 RNF17Q9BXT8 1623 aaKnown RBP11.2□□□□□ -0.62
LIG4-202ENST00000405925 MTHFSDQ2M296 383 aaKnown RBP11.2□□□□□ -0.62
LIG4-202ENST00000405925 SLKQ9H2G2 1235 aaPredicted RBP11.2□□□□□ -0.62
LIG4-202ENST00000405925 ISY1Q9ULR0 285 aaKnown RBP11.2□□□□□ -0.62
LIG4-202ENST00000405925 F6X3S4 739 aa11.2□□□□□ -0.62
LIG4-202ENST00000405925 STARD3NLO95772 234 aa11.2□□□□□ -0.62
LIG4-202ENST00000405925 DIAPH3Q9NSV4 1193 aa11.2□□□□□ -0.62
LIG4-202ENST00000405925 DIP2BQ9P265 1576 aa11.19□□□□□ -0.62
LIG4-202ENST00000405925 NOL8Q76FK4 1167 aaKnown RBP11.19□□□□□ -0.62
LIG4-202ENST00000405925 CLASRPQ8N2M8 674 aaKnown RBP11.19□□□□□ -0.62
LIG4-202ENST00000405925 ZCRB1Q8TBF4 217 aaKnown RBP11.19□□□□□ -0.62
LIG4-202ENST00000405925 INO80Q9ULG1 1556 aaPredicted RBP11.19□□□□□ -0.62
LIG4-202ENST00000405925 ALDH1L2Q3SY69 923 aa11.18□□□□□ -0.62
LIG4-202ENST00000405925 PDZRN3Q9UPQ7 1066 aa11.18□□□□□ -0.62
LIG4-202ENST00000405925 ANXA1P04083 346 aa11.18□□□□□ -0.62
LIG4-202ENST00000405925 FMNL2Q96PY5 1086 aa11.18□□□□□ -0.62
LIG4-202ENST00000405925 PRR36Q9H6K5 1346 aa11.18□□□□□ -0.62
LIG4-202ENST00000405925 VPS37DQ86XT2 251 aa11.18□□□□□ -0.62
LIG4-202ENST00000405925 SLC39A6Q13433 755 aa11.17□□□□□ -0.62
LIG4-202ENST00000405925 RSPH6AQ9H0K4 717 aa11.17□□□□□ -0.62
LIG4-202ENST00000405925 TOMM22Q9NS69 142 aa11.17□□□□□ -0.62
LIG4-202ENST00000405925 IL16Q14005 1332 aa11.17□□□□□ -0.62
LIG4-202ENST00000405925 IL13P35225 146 aa11.17□□□□□ -0.62
LIG4-202ENST00000405925 BTG4Q9NY30 223 aa11.17□□□□□ -0.62
LIG4-202ENST00000405925 ZNF335Q9H4Z2 1342 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms