RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 SBF2Q86WG5 1849 aa14.73□□□□□ -0.05
NEDD8-202ENST00000396828 ZNF692Q9BU19 519 aaPredicted RBP14.72□□□□□ -0.05
NEDD8-202ENST00000396828 PARD3Q8TEW0 1356 aa14.72□□□□□ -0.05
NEDD8-202ENST00000396828 NFAT5O94916 1531 aa14.71□□□□□ -0.05
NEDD8-202ENST00000396828 WNK3Q9BYP7 1800 aa14.71□□□□□ -0.05
NEDD8-202ENST00000396828 WDR17Q8IZU2 1322 aa14.71□□□□□ -0.05
NEDD8-202ENST00000396828 CLSPNQ9HAW4 1339 aa14.71□□□□□ -0.05
NEDD8-202ENST00000396828 CD163L1Q9NR16 1453 aa14.71□□□□□ -0.05
NEDD8-202ENST00000396828 KTN1Q86UP2 1357 aaKnown RBP14.71□□□□□ -0.06
NEDD8-202ENST00000396828 MON2Q7Z3U7 1717 aa14.7□□□□□ -0.06
NEDD8-202ENST00000396828 DDB1Q16531 1140 aa14.7□□□□□ -0.06
NEDD8-202ENST00000396828 MARCH10Q8NA82 808 aaPredicted RBP14.7□□□□□ -0.06
NEDD8-202ENST00000396828 OVOS2A0A0G2JMS6 1433 aa14.69□□□□□ -0.06
NEDD8-202ENST00000396828 OVOS2A0A0J9YW53 1432 aa14.69□□□□□ -0.06
NEDD8-202ENST00000396828 OVOS2Q6IE36 1432 aa14.69□□□□□ -0.06
NEDD8-202ENST00000396828 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.69□□□□□ -0.06
NEDD8-202ENST00000396828 TTC21AQ8NDW8 1320 aa14.68□□□□□ -0.06
NEDD8-202ENST00000396828 NME9Q86XW9 330 aa14.68□□□□□ -0.06
NEDD8-202ENST00000396828 KCNH5Q8NCM2 988 aa14.68□□□□□ -0.06
NEDD8-202ENST00000396828 CARD11Q9BXL7 1154 aa14.68□□□□□ -0.06
NEDD8-202ENST00000396828 ZEB1P37275 1124 aaPredicted RBP14.67□□□□□ -0.06
NEDD8-202ENST00000396828 PROM2Q8N271 834 aa14.67□□□□□ -0.06
NEDD8-202ENST00000396828 SLC12A5Q9H2X9 1139 aa14.67□□□□□ -0.06
NEDD8-202ENST00000396828 SBNO2Q9Y2G9 1366 aa14.67□□□□□ -0.06
NEDD8-202ENST00000396828 CARD10Q9BWT7 1032 aa14.66□□□□□ -0.06
NEDD8-202ENST00000396828 UTRNP46939 3433 aa14.65□□□□□ -0.06
NEDD8-202ENST00000396828 USP31Q70CQ4 1352 aa14.65□□□□□ -0.06
NEDD8-202ENST00000396828 CSB-PGBD3P0DP91 1061 aa14.65□□□□□ -0.06
NEDD8-202ENST00000396828 TMC1Q8TDI8 760 aa14.65□□□□□ -0.06
NEDD8-202ENST00000396828 BCL11BQ9C0K0 894 aaPredicted RBP14.65□□□□□ -0.06
NEDD8-202ENST00000396828 PDGFDQ9GZP0 370 aaPredicted RBP14.65□□□□□ -0.06
NEDD8-202ENST00000396828 ANO8Q9HCE9 1232 aaPredicted RBP14.65□□□□□ -0.06
NEDD8-202ENST00000396828 PLSCR1O15162 318 aa14.64□□□□□ -0.07
NEDD8-202ENST00000396828 NBPF14Q5TI25 921 aa14.64□□□□□ -0.07
NEDD8-202ENST00000396828 USP54Q70EL1 1684 aa14.64□□□□□ -0.07
NEDD8-202ENST00000396828 LTN1O94822 1766 aa14.63□□□□□ -0.07
NEDD8-202ENST00000396828 RGPD3A6NKT7 1758 aaPredicted RBP14.62□□□□□ -0.07
NEDD8-202ENST00000396828 RGPD4Q7Z3J3 1758 aa14.62□□□□□ -0.07
NEDD8-202ENST00000396828 C11orf95C9JLR9 678 aaPredicted RBP14.62□□□□□ -0.07
NEDD8-202ENST00000396828 KCNQ2O43526 872 aa14.62□□□□□ -0.07
NEDD8-202ENST00000396828 CDCA7Q9BWT1 371 aaPredicted RBP14.62□□□□□ -0.07
NEDD8-202ENST00000396828 A0A1W2PP64 1363 aa14.61□□□□□ -0.07
NEDD8-202ENST00000396828 BCL9O00512 1426 aa14.61□□□□□ -0.07
NEDD8-202ENST00000396828 EXOC5O00471 708 aa14.61□□□□□ -0.07
NEDD8-202ENST00000396828 ADRA2BP18089 450 aa14.61□□□□□ -0.07
NEDD8-202ENST00000396828 ERBB3P21860 1342 aa14.61□□□□□ -0.07
NEDD8-202ENST00000396828 TONSLQ96HA7 1378 aa14.6□□□□□ -0.07
NEDD8-202ENST00000396828 TESK2Q96S53 571 aa14.6□□□□□ -0.07
NEDD8-202ENST00000396828 ABCC6O95255 1503 aa14.6□□□□□ -0.07
NEDD8-202ENST00000396828 CASZ1Q86V15 1759 aa14.6□□□□□ -0.07
NEDD8-202ENST00000396828 CCDC7Q96M83 1385 aa14.6□□□□□ -0.07
NEDD8-202ENST00000396828 FBLN1P23142 703 aa14.59□□□□□ -0.07
NEDD8-202ENST00000396828 ACSBG1Q96GR2 724 aa14.59□□□□□ -0.07
NEDD8-202ENST00000396828 NLRP2Q9NX02 1062 aa14.59□□□□□ -0.07
NEDD8-202ENST00000396828 TNS2Q63HR2 1409 aa14.58□□□□□ -0.07
NEDD8-202ENST00000396828 EDC4Q6P2E9 1401 aaKnown RBP14.58□□□□□ -0.07
NEDD8-202ENST00000396828 ST20-MTHFSA0A0A6YYL1 179 aa14.58□□□□□ -0.08
NEDD8-202ENST00000396828 TXNRD1Q16881 649 aa14.58□□□□□ -0.08
NEDD8-202ENST00000396828 HDGFL2Q7Z4V5 671 aaPredicted RBP14.58□□□□□ -0.08
NEDD8-202ENST00000396828 ANKRD24Q8TF21 1146 aa14.58□□□□□ -0.08
NEDD8-202ENST00000396828 SPON1Q9HCB6 807 aa14.58□□□□□ -0.08
NEDD8-202ENST00000396828 ZBTB7AO95365 584 aa14.56□□□□□ -0.08
NEDD8-202ENST00000396828 NHSQ6T4R5 1651 aa14.55□□□□□ -0.08
NEDD8-202ENST00000396828 IL2RBP14784 551 aa14.55□□□□□ -0.08
NEDD8-202ENST00000396828 TERF2IPQ9NYB0 399 aa14.55□□□□□ -0.08
NEDD8-202ENST00000396828 LTV1Q96GA3 475 aaPredicted RBP14.54□□□□□ -0.08
NEDD8-202ENST00000396828 PUS7Q96PZ0 661 aaKnown RBP14.54□□□□□ -0.08
NEDD8-202ENST00000396828 PPP1R1BQ9UD71 204 aaPredicted RBP14.54□□□□□ -0.08
NEDD8-202ENST00000396828 GOLGB1Q14789 3259 aaKnown RBP14.53□□□□□ -0.08
NEDD8-202ENST00000396828 PTGER2P43116 358 aa14.53□□□□□ -0.08
NEDD8-202ENST00000396828 SLC15A2Q16348 729 aa14.53□□□□□ -0.08
NEDD8-202ENST00000396828 IP6K1Q92551 441 aa14.53□□□□□ -0.08
NEDD8-202ENST00000396828 ATF5Q9Y2D1 282 aaPredicted RBP14.53□□□□□ -0.08
NEDD8-202ENST00000396828 BTAF1O14981 1849 aa14.52□□□□□ -0.08
NEDD8-202ENST00000396828 RGPD2P0DJD1 1756 aa14.52□□□□□ -0.08
NEDD8-202ENST00000396828 MYOM1P52179 1685 aa14.52□□□□□ -0.09
NEDD8-202ENST00000396828 MAP3K19Q56UN5 1328 aa14.51□□□□□ -0.09
NEDD8-202ENST00000396828 LRRC4BQ9NT99 713 aa14.51□□□□□ -0.09
NEDD8-202ENST00000396828 STK32BQ9NY57 414 aa14.51□□□□□ -0.09
NEDD8-202ENST00000396828 TIMELESSQ9UNS1 1208 aa14.51□□□□□ -0.09
NEDD8-202ENST00000396828 KAT6BQ8WYB5 2073 aa14.51□□□□□ -0.09
NEDD8-202ENST00000396828 PAPPAQ13219 1627 aa14.5□□□□□ -0.09
NEDD8-202ENST00000396828 NINLQ9Y2I6 1382 aa14.49□□□□□ -0.09
NEDD8-202ENST00000396828 FAM208AQ9UK61 1670 aaKnown RBP14.49□□□□□ -0.09
NEDD8-202ENST00000396828 HOXC9P31274 260 aa14.49□□□□□ -0.09
NEDD8-202ENST00000396828 ZNF827Q17R98 1081 aa14.49□□□□□ -0.09
NEDD8-202ENST00000396828 DDX54Q8TDD1 881 aaKnown RBP14.49□□□□□ -0.09
NEDD8-202ENST00000396828 COG3Q96JB2 828 aa14.49□□□□□ -0.09
NEDD8-202ENST00000396828 RRS1Q15050 365 aaKnown RBP14.48□□□□□ -0.09
NEDD8-202ENST00000396828 SHANK3Q9BYB0 1731 aa14.48□□□□□ -0.09
NEDD8-202ENST00000396828 FYB1O15117 783 aa14.47□□□□□ -0.09
NEDD8-202ENST00000396828 KCNQ4P56696 695 aa14.47□□□□□ -0.09
NEDD8-202ENST00000396828 SGIP1Q9BQI5 828 aa14.47□□□□□ -0.09
NEDD8-202ENST00000396828 GGNBP2Q9H3C7 697 aa14.47□□□□□ -0.09
NEDD8-202ENST00000396828 ANKRD36BQ8N2N9 1353 aa14.47□□□□□ -0.09
NEDD8-202ENST00000396828 MEGF6O75095 1541 aa14.46□□□□□ -0.09
NEDD8-202ENST00000396828 YY1P25490 414 aa14.46□□□□□ -0.09
NEDD8-202ENST00000396828 AMPHP49418 695 aa14.46□□□□□ -0.09
NEDD8-202ENST00000396828 NBPF6Q5VWK0 638 aa14.46□□□□□ -0.09
NEDD8-202ENST00000396828 NBPF4Q96M43 638 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms