RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CRB1P82279 1406 aa9.64□□□□□ -0.87
LIMA1-202ENST00000394943 ABTB2Q8N961 1025 aa9.64□□□□□ -0.87
LIMA1-202ENST00000394943 COG3Q96JB2 828 aa9.64□□□□□ -0.87
LIMA1-202ENST00000394943 NHSQ6T4R5 1651 aa9.64□□□□□ -0.87
LIMA1-202ENST00000394943 NCBP3Q53F19 620 aaKnown RBP9.63□□□□□ -0.87
LIMA1-202ENST00000394943 POLKQ9UBT6 870 aa9.63□□□□□ -0.87
LIMA1-202ENST00000394943 MRC1P22897 1456 aa9.63□□□□□ -0.87
LIMA1-202ENST00000394943 NUTM2FA1L443 756 aa9.63□□□□□ -0.87
LIMA1-202ENST00000394943 THRAP3Q9Y2W1 955 aaKnown RBP9.63□□□□□ -0.87
LIMA1-202ENST00000394943 KNSTRNQ9Y448 316 aa9.63□□□□□ -0.87
LIMA1-202ENST00000394943 VPS72Q15906 364 aa9.63□□□□□ -0.87
LIMA1-202ENST00000394943 TMC1Q8TDI8 760 aa9.63□□□□□ -0.87
LIMA1-202ENST00000394943 TNS1Q9HBL0 1735 aaKnown RBP9.63□□□□□ -0.87
LIMA1-202ENST00000394943 MAP3K19Q56UN5 1328 aa9.62□□□□□ -0.87
LIMA1-202ENST00000394943 ZRANB1Q9UGI0 708 aa9.62□□□□□ -0.87
LIMA1-202ENST00000394943 SCN11AQ9UI33 1791 aa9.62□□□□□ -0.87
LIMA1-202ENST00000394943 TOGARAM1Q9Y4F4 1720 aa9.62□□□□□ -0.87
LIMA1-202ENST00000394943 FAM83GA6ND36 823 aa9.62□□□□□ -0.87
LIMA1-202ENST00000394943 BARGINQ6ZT62 677 aa9.62□□□□□ -0.87
LIMA1-202ENST00000394943 RGS17Q9UGC6 210 aaPredicted RBP9.62□□□□□ -0.87
LIMA1-202ENST00000394943 OVOS2A0A0G2JMS6 1433 aa9.62□□□□□ -0.87
LIMA1-202ENST00000394943 HOXC9P31274 260 aa9.62□□□□□ -0.87
LIMA1-202ENST00000394943 ERBB3P21860 1342 aa9.61□□□□□ -0.87
LIMA1-202ENST00000394943 SPATA31A5Q5VU36 1347 aa9.61□□□□□ -0.87
LIMA1-202ENST00000394943 SPATA31A7Q8IWB4 1347 aa9.61□□□□□ -0.87
LIMA1-202ENST00000394943 WDR17Q8IZU2 1322 aa9.61□□□□□ -0.87
LIMA1-202ENST00000394943 IGSF1Q8N6C5 1336 aa9.61□□□□□ -0.87
LIMA1-202ENST00000394943 NLRP6P59044 892 aa9.61□□□□□ -0.87
LIMA1-202ENST00000394943 MYBBP1AQ9BQG0 1328 aaKnown RBP9.6□□□□□ -0.87
LIMA1-202ENST00000394943 PRKRIP1Q9H875 184 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-202ENST00000394943 UBR2Q8IWV8 1755 aa9.6□□□□□ -0.87
LIMA1-202ENST00000394943 UNC5CLQ8IV45 518 aa9.6□□□□□ -0.87
LIMA1-202ENST00000394943 TNS2Q63HR2 1409 aa9.6□□□□□ -0.87
LIMA1-202ENST00000394943 PPP2R1AP30153 589 aa9.59□□□□□ -0.87
LIMA1-202ENST00000394943 XPCQ01831 940 aaPredicted RBP9.59□□□□□ -0.87
LIMA1-202ENST00000394943 RREB1Q92766 1687 aa9.59□□□□□ -0.87
LIMA1-202ENST00000394943 SPATA31A1Q5TZJ5 1347 aa9.59□□□□□ -0.87
LIMA1-202ENST00000394943 QSER1Q2KHR3 1735 aa9.59□□□□□ -0.87
LIMA1-202ENST00000394943 IL13P35225 146 aa9.59□□□□□ -0.87
LIMA1-202ENST00000394943 CARD10Q9BWT7 1032 aa9.59□□□□□ -0.87
LIMA1-202ENST00000394943 DLG5Q8TDM6 1919 aa9.59□□□□□ -0.87
LIMA1-202ENST00000394943 GGNBP2Q9H3C7 697 aa9.59□□□□□ -0.87
LIMA1-202ENST00000394943 LY75O60449 1722 aa9.58□□□□□ -0.88
LIMA1-202ENST00000394943 AXIN2Q9Y2T1 843 aa9.58□□□□□ -0.88
LIMA1-202ENST00000394943 ZNF772Q68DY9 489 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-202ENST00000394943 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.57□□□□□ -0.88
LIMA1-202ENST00000394943 COL24A1Q17RW2 1714 aa9.57□□□□□ -0.88
LIMA1-202ENST00000394943 KDM3BQ7LBC6 1761 aa9.57□□□□□ -0.88
LIMA1-202ENST00000394943 RGS12O14924 1447 aa9.56□□□□□ -0.88
LIMA1-202ENST00000394943 ITGB4P16144 1822 aa9.56□□□□□ -0.88
LIMA1-202ENST00000394943 CDCA7Q9BWT1 371 aaPredicted RBP9.56□□□□□ -0.88
LIMA1-202ENST00000394943 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.56□□□□□ -0.882e-8■■■■■ 37.9
LIMA1-202ENST00000394943 MEGF6O75095 1541 aa9.56□□□□□ -0.88
LIMA1-202ENST00000394943 CCER2I3L3R5 266 aa9.55□□□□□ -0.88
LIMA1-202ENST00000394943 MORC1Q86VD1 984 aa9.55□□□□□ -0.88
LIMA1-202ENST00000394943 AFF2P51816 1311 aa9.55□□□□□ -0.88
LIMA1-202ENST00000394943 DOT1LQ8TEK3 1739 aa9.55□□□□□ -0.88
LIMA1-202ENST00000394943 CABLES1Q8TDN4 633 aa9.54□□□□□ -0.88
LIMA1-202ENST00000394943 PAK3O75914 559 aaPredicted RBP9.54□□□□□ -0.88
LIMA1-202ENST00000394943 DDX10Q13206 875 aaKnown RBP9.54□□□□□ -0.88
LIMA1-202ENST00000394943 EIF4A2Q14240 407 aaKnown RBP9.54□□□□□ -0.88
LIMA1-202ENST00000394943 TRPC5Q9UL62 973 aaPredicted RBP9.54□□□□□ -0.88
LIMA1-202ENST00000394943 EMILIN1Q9Y6C2 1016 aa9.53□□□□□ -0.88
LIMA1-202ENST00000394943 NKX1-1Q15270 411 aaPredicted RBP9.53□□□□□ -0.88
LIMA1-202ENST00000394943 PLEKHF1Q96S99 279 aa9.53□□□□□ -0.88
LIMA1-202ENST00000394943 COL5A3P25940 1745 aaPredicted RBP9.52□□□□□ -0.88
LIMA1-202ENST00000394943 C5P01031 1676 aa9.52□□□□□ -0.89
LIMA1-202ENST00000394943 ANKRD24Q8TF21 1146 aa9.52□□□□□ -0.89
LIMA1-202ENST00000394943 GJD4Q96KN9 370 aaPredicted RBP9.52□□□□□ -0.89
LIMA1-202ENST00000394943 MTHFSP49914 203 aa9.51□□□□□ -0.89
LIMA1-202ENST00000394943 PRDM11Q9NQV5 511 aa9.51□□□□□ -0.89
LIMA1-202ENST00000394943 BTG4Q9NY30 223 aa9.51□□□□□ -0.89
LIMA1-202ENST00000394943 LAMB4A4D0S4 1761 aa9.51□□□□□ -0.89
LIMA1-202ENST00000394943 RBM6P78332 1123 aaKnown RBP9.51□□□□□ -0.89
LIMA1-202ENST00000394943 USP21Q9UK80 565 aa9.51□□□□□ -0.89
LIMA1-202ENST00000394943 RRS1Q15050 365 aaKnown RBP9.5□□□□□ -0.89
LIMA1-202ENST00000394943 HSP90AB2PQ58FF8 381 aa9.5□□□□□ -0.89
LIMA1-202ENST00000394943 RSPH6AQ9H0K4 717 aa9.5□□□□□ -0.89
LIMA1-202ENST00000394943 BTAF1O14981 1849 aa9.5□□□□□ -0.89
LIMA1-202ENST00000394943 NUTM2GQ5VZR2 741 aa9.5□□□□□ -0.89
LIMA1-202ENST00000394943 TCP11L2Q8N4U5 519 aa9.5□□□□□ -0.89
LIMA1-202ENST00000394943 EYA1Q99502 592 aa9.5□□□□□ -0.89
LIMA1-202ENST00000394943 NBPF6Q5VWK0 638 aa9.49□□□□□ -0.89
LIMA1-202ENST00000394943 NBPF4Q96M43 638 aa9.49□□□□□ -0.89
LIMA1-202ENST00000394943 TAF1LQ8IZX4 1826 aa9.49□□□□□ -0.89
LIMA1-202ENST00000394943 CEMIPQ8WUJ3 1361 aa9.49□□□□□ -0.89
LIMA1-202ENST00000394943 LARP1Q6PKG0 1096 aaKnown RBP9.49□□□□□ -0.89
LIMA1-202ENST00000394943 TJP1Q07157 1748 aa9.49□□□□□ -0.89
LIMA1-202ENST00000394943 NUP188Q5SRE5 1749 aa9.49□□□□□ -0.89
LIMA1-202ENST00000394943 FCHSD2O94868 740 aa9.49□□□□□ -0.89
LIMA1-202ENST00000394943 CC2D1BQ5T0F9 858 aaKnown RBP9.49□□□□□ -0.89
LIMA1-202ENST00000394943 ZC3H6P61129 1189 aaKnown RBP9.48□□□□□ -0.89
LIMA1-202ENST00000394943 POTEAQ6S8J7 498 aa9.48□□□□□ -0.89
LIMA1-202ENST00000394943 PNISRQ8TF01 805 aaKnown RBP9.48□□□□□ -0.89
LIMA1-202ENST00000394943 DIAPH1O60610 1272 aaKnown RBP9.47□□□□□ -0.89
LIMA1-202ENST00000394943 HTATSF1O43719 755 aaKnown RBP9.47□□□□□ -0.89
LIMA1-202ENST00000394943 KDM6AO15550 1401 aaPredicted RBP9.46□□□□□ -0.89
LIMA1-202ENST00000394943 FBLN1P23142 703 aa9.46□□□□□ -0.89
LIMA1-202ENST00000394943 AMPHP49418 695 aa9.46□□□□□ -0.89
LIMA1-202ENST00000394943 CHRNA2Q15822 529 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms