RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 FBXW7Q969H0 707 aa10.91□□□□□ -0.66
RTN4-206ENST00000394611 THUMPD2Q9BTF0 503 aaKnown RBP10.91□□□□□ -0.66
RTN4-206ENST00000394611 SLC12A5Q9H2X9 1139 aa10.91□□□□□ -0.66
RTN4-206ENST00000394611 NRXN1Q9ULB1 1477 aa10.91□□□□□ -0.66
RTN4-206ENST00000394611 KIAA2012Q0VF49 1180 aa10.9□□□□□ -0.66
RTN4-206ENST00000394611 GGNBP2Q9H3C7 697 aa10.9□□□□□ -0.66
RTN4-206ENST00000394611 IQGAP1P46940 1657 aa10.9□□□□□ -0.66
RTN4-206ENST00000394611 LARP6Q9BRS8 491 aaKnown RBP10.9□□□□□ -0.67
RTN4-206ENST00000394611 NAP1L2Q9ULW6 460 aaPredicted RBP10.9□□□□□ -0.67
RTN4-206ENST00000394611 STAC3Q96MF2 364 aa10.89□□□□□ -0.67
RTN4-206ENST00000394611 C14orf93Q9H972 538 aaKnown RBP10.89□□□□□ -0.67
RTN4-206ENST00000394611 DISP3Q9P2K9 1392 aa10.89□□□□□ -0.67
RTN4-206ENST00000394611 PLEKHG1Q9ULL1 1385 aa10.89□□□□□ -0.67
RTN4-206ENST00000394611 NRXN3Q9Y4C0 1643 aa10.89□□□□□ -0.67
RTN4-206ENST00000394611 SYCE3A1L190 88 aa10.89□□□□□ -0.67
RTN4-206ENST00000394611 SPDYE4A6NLX3 237 aa10.89□□□□□ -0.67
RTN4-206ENST00000394611 RILPL2Q969X0 211 aa10.89□□□□□ -0.67
RTN4-206ENST00000394611 SPC24Q8NBT2 197 aa10.89□□□□□ -0.67
RTN4-206ENST00000394611 RNF123Q5XPI4 1314 aa10.88□□□□□ -0.67
RTN4-206ENST00000394611 POLR1AO95602 1720 aaPredicted RBP10.88□□□□□ -0.67
RTN4-206ENST00000394611 CCDC27Q2M243 656 aa10.88□□□□□ -0.67
RTN4-206ENST00000394611 TRPM1Q7Z4N2 1603 aa10.88□□□□□ -0.67
RTN4-206ENST00000394611 FBLN1P23142 703 aa10.88□□□□□ -0.67
RTN4-206ENST00000394611 NOB1Q9ULX3 412 aaKnown RBP10.88□□□□□ -0.67
RTN4-206ENST00000394611 ALKQ9UM73 1620 aa10.88□□□□□ -0.67
RTN4-206ENST00000394611 STRCQ7RTU9 1775 aa10.88□□□□□ -0.67
RTN4-206ENST00000394611 WWC1Q8IX03 1113 aa10.88□□□□□ -0.67
RTN4-206ENST00000394611 TRERF1Q96PN7 1200 aa10.88□□□□□ -0.67
RTN4-206ENST00000394611 NPHP4O75161 1426 aaPredicted RBP10.88□□□□□ -0.67
RTN4-206ENST00000394611 ADAMTS13Q76LX8 1427 aa10.88□□□□□ -0.67
RTN4-206ENST00000394611 CLCN1P35523 988 aa10.87□□□□□ -0.67
RTN4-206ENST00000394611 CASC1Q6TDU7 716 aa10.87□□□□□ -0.67
RTN4-206ENST00000394611 METP08581 1390 aa10.87□□□□□ -0.67
RTN4-206ENST00000394611 ZNF771Q7L3S4 317 aaPredicted RBP10.87□□□□□ -0.67
RTN4-206ENST00000394611 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.87□□□□□ -0.67
RTN4-206ENST00000394611 GAS2L3Q86XJ1 694 aa10.87□□□□□ -0.67
RTN4-206ENST00000394611 TBC1D32Q96NH3 1257 aa10.87□□□□□ -0.67
RTN4-206ENST00000394611 RALGAPBQ86X10 1494 aa10.86□□□□□ -0.67
RTN4-206ENST00000394611 RIPK4P57078 832 aa10.86□□□□□ -0.67
RTN4-206ENST00000394611 SETBP1Q9Y6X0 1596 aa10.86□□□□□ -0.67
RTN4-206ENST00000394611 C17orf53Q8N3J3 647 aaPredicted RBP10.86□□□□□ -0.67
RTN4-206ENST00000394611 ERBB4Q15303 1308 aa10.86□□□□□ -0.67
RTN4-206ENST00000394611 ASXL1Q8IXJ9 1541 aa10.85□□□□□ -0.67
RTN4-206ENST00000394611 CHAF1AQ13111 956 aaPredicted RBP10.85□□□□□ -0.67
RTN4-206ENST00000394611 TMEM57Q8N5G2 664 aa10.85□□□□□ -0.67
RTN4-206ENST00000394611 JARID2Q92833 1246 aaPredicted RBP10.85□□□□□ -0.67
RTN4-206ENST00000394611 KCNJ4P48050 445 aa10.85□□□□□ -0.67
RTN4-206ENST00000394611 FOSBP53539 338 aa10.84□□□□□ -0.67
RTN4-206ENST00000394611 TSHZ3Q63HK5 1081 aa10.84□□□□□ -0.67
RTN4-206ENST00000394611 C14orf37Q86TY3 774 aa10.84□□□□□ -0.67
RTN4-206ENST00000394611 MED14O60244 1454 aa10.84□□□□□ -0.67
RTN4-206ENST00000394611 SETD1AO15047 1707 aaKnown RBP10.84□□□□□ -0.67
RTN4-206ENST00000394611 KDM2BQ8NHM5 1336 aa10.84□□□□□ -0.67
RTN4-206ENST00000394611 RARSP54136 660 aaKnown RBP10.84□□□□□ -0.67
RTN4-206ENST00000394611 DDX54Q8TDD1 881 aaKnown RBP10.84□□□□□ -0.67
RTN4-206ENST00000394611 CCDC9Q9Y3X0 531 aaKnown RBP10.84□□□□□ -0.67
RTN4-206ENST00000394611 TBX22Q9Y458 520 aa10.84□□□□□ -0.67
RTN4-206ENST00000394611 ADGRB1O14514 1584 aa10.84□□□□□ -0.67
RTN4-206ENST00000394611 ZSCAN30Q86W11 494 aa10.84□□□□□ -0.67
RTN4-206ENST00000394611 IPO8O15397 1037 aaKnown RBP10.83□□□□□ -0.68
RTN4-206ENST00000394611 KIAA1210Q9ULL0 1709 aa10.83□□□□□ -0.68
RTN4-206ENST00000394611 SMARCA5O60264 1052 aaPredicted RBP10.83□□□□□ -0.68
RTN4-206ENST00000394611 CABP2Q9NPB3 220 aa10.83□□□□□ -0.68
RTN4-206ENST00000394611 ANO2Q9NQ90 1003 aa10.83□□□□□ -0.68
RTN4-206ENST00000394611 PTPRUQ92729 1446 aa10.83□□□□□ -0.68
RTN4-206ENST00000394611 RBM33Q96EV2 1170 aaKnown RBP10.82□□□□□ -0.68
RTN4-206ENST00000394611 LAMC1P11047 1609 aa10.82□□□□□ -0.68
RTN4-206ENST00000394611 GOLGA6L4A6NEF3 574 aa10.82□□□□□ -0.68
RTN4-206ENST00000394611 NEK4P51957 841 aa10.82□□□□□ -0.68
RTN4-206ENST00000394611 PDE3AQ14432 1141 aa10.82□□□□□ -0.68
RTN4-206ENST00000394611 RUNDC1Q96C34 613 aa10.82□□□□□ -0.68
RTN4-206ENST00000394611 YTHDC2Q9H6S0 1430 aaKnown RBP10.82□□□□□ -0.68
RTN4-206ENST00000394611 TPM2P07951 284 aa10.82□□□□□ -0.68
RTN4-206ENST00000394611 MVPQ14764 893 aaKnown RBP10.82□□□□□ -0.68
RTN4-206ENST00000394611 SSH1Q8WYL5 1049 aa10.82□□□□□ -0.68
RTN4-206ENST00000394611 DDX19BQ9UMR2 479 aa10.82□□□□□ -0.68
RTN4-206ENST00000394611 AMOTL2Q9Y2J4 779 aa10.82□□□□□ -0.68
RTN4-206ENST00000394611 GPRASP1Q5JY77 1395 aa10.81□□□□□ -0.68
RTN4-206ENST00000394611 OS9Q13438 667 aaPredicted RBP10.81□□□□□ -0.68
RTN4-206ENST00000394611 UPF3BQ9BZI7 483 aaKnown RBP10.81□□□□□ -0.68
RTN4-206ENST00000394611 MINK1Q8N4C8 1332 aaPredicted RBP10.81□□□□□ -0.68
RTN4-206ENST00000394611 MAP4K4O95819 1239 aaPredicted RBP10.81□□□□□ -0.68
RTN4-206ENST00000394611 SKOR2Q2VWA4 1001 aaPredicted RBP10.81□□□□□ -0.68
RTN4-206ENST00000394611 FIBPO43427 364 aa10.81□□□□□ -0.68
RTN4-206ENST00000394611 ST18O60284 1047 aa10.81□□□□□ -0.68
RTN4-206ENST00000394611 CCDC173Q0VFZ6 552 aa10.81□□□□□ -0.68
RTN4-206ENST00000394611 WAPLQ7Z5K2 1190 aa10.81□□□□□ -0.68
RTN4-206ENST00000394611 KCNA6P17658 529 aa10.8□□□□□ -0.68
RTN4-206ENST00000394611 LRPPRCP42704 1394 aaKnown RBP10.8□□□□□ -0.68
RTN4-206ENST00000394611 K7ELQ4 463 aaPredicted RBP10.8□□□□□ -0.68
RTN4-206ENST00000394611 GAS2L2Q8NHY3 880 aa10.8□□□□□ -0.68
RTN4-206ENST00000394611 ERICH4A6NGS2 130 aa10.8□□□□□ -0.68
RTN4-206ENST00000394611 PER1O15534 1290 aaPredicted RBP10.8□□□□□ -0.68
RTN4-206ENST00000394611 TRIM27P14373 513 aa10.79□□□□□ -0.68
RTN4-206ENST00000394611 PDCL3Q9H2J4 239 aa10.79□□□□□ -0.68
RTN4-206ENST00000394611 ZNF335Q9H4Z2 1342 aaPredicted RBP10.79□□□□□ -0.68
RTN4-206ENST00000394611 PRAM1Q96QH2 718 aa10.79□□□□□ -0.68
RTN4-206ENST00000394611 DIP2AQ14689 1571 aa10.79□□□□□ -0.68
RTN4-206ENST00000394611 PRIM1P49642 420 aaKnown RBP10.79□□□□□ -0.68
RTN4-206ENST00000394611 USP25Q9UHP3 1055 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms