RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 VPS72Q15906 364 aa9.67□□□□□ -0.86
CSDE1-204ENST00000369530 RGL3Q3MIN7 710 aa9.66□□□□□ -0.86
CSDE1-204ENST00000369530 ZNF326Q5BKZ1 582 aaKnown RBP9.66□□□□□ -0.86
CSDE1-204ENST00000369530 FAM83GA6ND36 823 aa9.66□□□□□ -0.86
CSDE1-204ENST00000369530 OVOS2A0A0G2JMS6 1433 aa9.66□□□□□ -0.86
CSDE1-204ENST00000369530 CRB1P82279 1406 aa9.65□□□□□ -0.86
CSDE1-204ENST00000369530 CCDC61Q9Y6R9 512 aa9.65□□□□□ -0.86
CSDE1-204ENST00000369530 MEGF6O75095 1541 aa9.65□□□□□ -0.86
CSDE1-204ENST00000369530 KCPQ6ZWJ8 1503 aa9.65□□□□□ -0.86
CSDE1-204ENST00000369530 KDRP35968 1356 aa9.65□□□□□ -0.87
CSDE1-204ENST00000369530 CCDC7Q96M83 1385 aa9.65□□□□□ -0.87
CSDE1-204ENST00000369530 TONSLQ96HA7 1378 aa9.64□□□□□ -0.87
CSDE1-204ENST00000369530 BARGINQ6ZT62 677 aa9.64□□□□□ -0.87
CSDE1-204ENST00000369530 SPATA31A1Q5TZJ5 1347 aa9.64□□□□□ -0.87
CSDE1-204ENST00000369530 TTC21BQ7Z4L5 1316 aa9.63□□□□□ -0.87
CSDE1-204ENST00000369530 ARHGEF25Q86VW2 580 aa9.63□□□□□ -0.87
CSDE1-204ENST00000369530 MYH14Q7Z406 1995 aaKnown RBP9.63□□□□□ -0.87
CSDE1-204ENST00000369530 TRAK1Q9UPV9 953 aa9.63□□□□□ -0.87
CSDE1-204ENST00000369530 LAMB2P55268 1798 aa9.62□□□□□ -0.87
CSDE1-204ENST00000369530 FANCIQ9NVI1 1328 aa9.62□□□□□ -0.87
CSDE1-204ENST00000369530 ATF3P18847 181 aa9.62□□□□□ -0.87
CSDE1-204ENST00000369530 ANO8Q9HCE9 1232 aaPredicted RBP9.62□□□□□ -0.87
CSDE1-204ENST00000369530 A0A1B0GUL6 1792 aa9.62□□□□□ -0.87
CSDE1-204ENST00000369530 KRT28Q7Z3Y7 464 aa9.62□□□□□ -0.87
CSDE1-204ENST00000369530 STAG3Q9UJ98 1225 aa9.62□□□□□ -0.87
CSDE1-204ENST00000369530 AXIN2Q9Y2T1 843 aa9.61□□□□□ -0.87
CSDE1-204ENST00000369530 KIAA0232Q92628 1395 aa9.61□□□□□ -0.87
CSDE1-204ENST00000369530 LAMB1P07942 1786 aa9.61□□□□□ -0.87
CSDE1-204ENST00000369530 AFF2P51816 1311 aa9.61□□□□□ -0.87
CSDE1-204ENST00000369530 EIF5BO60841 1220 aaKnown RBP9.61□□□□□ -0.87
CSDE1-204ENST00000369530 UTRNP46939 3433 aa9.6□□□□□ -0.87
CSDE1-204ENST00000369530 ANKRD36CQ5JPF3 1778 aa9.6□□□□□ -0.87
CSDE1-204ENST00000369530 AFDNP55196 1824 aaKnown RBP9.59□□□□□ -0.87
CSDE1-204ENST00000369530 UNC5CLQ8IV45 518 aa9.59□□□□□ -0.87
CSDE1-204ENST00000369530 ARFGEF1Q9Y6D6 1849 aa9.58□□□□□ -0.88
CSDE1-204ENST00000369530 EVC2Q86UK5 1308 aa9.58□□□□□ -0.88
CSDE1-204ENST00000369530 ANKRD31Q8N7Z5 1873 aa9.57□□□□□ -0.88
CSDE1-204ENST00000369530 AMER1Q5JTC6 1135 aaPredicted RBP9.57□□□□□ -0.88
CSDE1-204ENST00000369530 LTBP1Q14766 1721 aa9.57□□□□□ -0.88
CSDE1-204ENST00000369530 MIER1Q8N108 512 aa9.57□□□□□ -0.88
CSDE1-204ENST00000369530 MINK1Q8N4C8 1332 aaPredicted RBP9.56□□□□□ -0.88
CSDE1-204ENST00000369530 CHGAP10645 457 aaKnown RBP9.56□□□□□ -0.88
CSDE1-204ENST00000369530 PIP4K2BP78356 416 aa9.56□□□□□ -0.88
CSDE1-204ENST00000369530 PARD3Q8TEW0 1356 aa9.56□□□□□ -0.88
CSDE1-204ENST00000369530 ST20-MTHFSA0A0A6YYL1 179 aa9.56□□□□□ -0.88
CSDE1-204ENST00000369530 UPF1Q92900 1129 aaKnown RBP eCLIP9.56□□□□□ -0.882e-6■■□□□ 14.2
CSDE1-204ENST00000369530 ZNF692Q9BU19 519 aaPredicted RBP9.55□□□□□ -0.88
CSDE1-204ENST00000369530 CABP2Q9NPB3 220 aa9.55□□□□□ -0.88
CSDE1-204ENST00000369530 FYB1O15117 783 aa9.55□□□□□ -0.88
CSDE1-204ENST00000369530 MSH5O43196 834 aa9.55□□□□□ -0.88
CSDE1-204ENST00000369530 FOXO3O43524 673 aa9.55□□□□□ -0.88
CSDE1-204ENST00000369530 THRAP3Q9Y2W1 955 aaKnown RBP9.55□□□□□ -0.88
CSDE1-204ENST00000369530 LRRC37AA6NMS7 1700 aa9.55□□□□□ -0.88
CSDE1-204ENST00000369530 SRCAPQ6ZRS2 3230 aa9.55□□□□□ -0.88
CSDE1-204ENST00000369530 ZNF772Q68DY9 489 aaPredicted RBP9.55□□□□□ -0.88
CSDE1-204ENST00000369530 GJD4Q96KN9 370 aaPredicted RBP9.55□□□□□ -0.88
CSDE1-204ENST00000369530 CABP1Q9NZU7 370 aa9.55□□□□□ -0.88
CSDE1-204ENST00000369530 WASHC2AQ641Q2 1341 aa9.55□□□□□ -0.88
CSDE1-204ENST00000369530 RBM19Q9Y4C8 960 aaKnown RBP9.54□□□□□ -0.88
CSDE1-204ENST00000369530 KTN1Q86UP2 1357 aaKnown RBP9.54□□□□□ -0.88
CSDE1-204ENST00000369530 ESCO1Q5FWF5 840 aa9.54□□□□□ -0.88
CSDE1-204ENST00000369530 ERBB3P21860 1342 aa9.54□□□□□ -0.88
CSDE1-204ENST00000369530 STK26Q9P289 416 aa9.53□□□□□ -0.88
CSDE1-204ENST00000369530 WDR17Q8IZU2 1322 aa9.53□□□□□ -0.88
CSDE1-204ENST00000369530 COL11A2P13942 1736 aaPredicted RBP9.53□□□□□ -0.88
CSDE1-204ENST00000369530 KIF7Q2M1P5 1343 aa9.53□□□□□ -0.88
CSDE1-204ENST00000369530 NSD3Q9BZ95 1437 aa9.53□□□□□ -0.88
CSDE1-204ENST00000369530 RBM6P78332 1123 aaKnown RBP9.52□□□□□ -0.89
CSDE1-204ENST00000369530 KDM6AO15550 1401 aaPredicted RBP9.52□□□□□ -0.89
CSDE1-204ENST00000369530 ZRANB1Q9UGI0 708 aa9.51□□□□□ -0.89
CSDE1-204ENST00000369530 GCP02774 474 aa9.51□□□□□ -0.89
CSDE1-204ENST00000369530 PSME1Q06323 249 aa9.51□□□□□ -0.89
CSDE1-204ENST00000369530 HIRIP3Q9BW71 556 aaPredicted RBP9.51□□□□□ -0.89
CSDE1-204ENST00000369530 GOLGB1Q14789 3259 aaKnown RBP9.5□□□□□ -0.89
CSDE1-204ENST00000369530 NKX1-1Q15270 411 aaPredicted RBP9.5□□□□□ -0.89
CSDE1-204ENST00000369530 DDX60Q8IY21 1712 aaKnown RBP9.5□□□□□ -0.89
CSDE1-204ENST00000369530 SLC12A5Q9H2X9 1139 aa9.49□□□□□ -0.89
CSDE1-204ENST00000369530 KDM2AQ9Y2K7 1162 aa9.49□□□□□ -0.89
CSDE1-204ENST00000369530 IGSF1Q8N6C5 1336 aa9.48□□□□□ -0.89
CSDE1-204ENST00000369530 PMFBP1Q8TBY8 1022 aa9.48□□□□□ -0.89
CSDE1-204ENST00000369530 SALL2Q9Y467 1007 aaPredicted RBP9.48□□□□□ -0.89
CSDE1-204ENST00000369530 CARD10Q9BWT7 1032 aa9.47□□□□□ -0.89
CSDE1-204ENST00000369530 TRPC5Q9UL62 973 aaPredicted RBP9.47□□□□□ -0.89
CSDE1-204ENST00000369530 DICER1Q9UPY3 1922 aaKnown RBP9.47□□□□□ -0.89
CSDE1-204ENST00000369530 HEG1Q9ULI3 1381 aa9.47□□□□□ -0.89
CSDE1-204ENST00000369530 CAMKK2Q96RR4 588 aa9.47□□□□□ -0.89
CSDE1-204ENST00000369530 SBF1O95248 1867 aa9.47□□□□□ -0.89
CSDE1-204ENST00000369530 DEKP35659 375 aaKnown RBP9.47□□□□□ -0.89
CSDE1-204ENST00000369530 HSPA5P11021 654 aaKnown RBP9.46□□□□□ -0.89
CSDE1-204ENST00000369530 IP6K1Q92551 441 aa9.46□□□□□ -0.89
CSDE1-204ENST00000369530 SGIP1Q9BQI5 828 aa9.46□□□□□ -0.89
CSDE1-204ENST00000369530 CARD11Q9BXL7 1154 aa9.46□□□□□ -0.89
CSDE1-204ENST00000369530 PROM2Q8N271 834 aa9.46□□□□□ -0.89
CSDE1-204ENST00000369530 CABLES1Q8TDN4 633 aa9.46□□□□□ -0.89
CSDE1-204ENST00000369530 MAP3K19Q56UN5 1328 aa9.46□□□□□ -0.9
CSDE1-204ENST00000369530 NME9Q86XW9 330 aa9.45□□□□□ -0.9
CSDE1-204ENST00000369530 PSME4Q14997 1843 aa9.45□□□□□ -0.9
CSDE1-204ENST00000369530 HOXC9P31274 260 aa9.45□□□□□ -0.9
CSDE1-204ENST00000369530 CEMIPQ8WUJ3 1361 aa9.45□□□□□ -0.9
CSDE1-204ENST00000369530 MAP3K5Q99683 1374 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms