RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ZC3H6P61129 1189 aaKnown RBP26.47■■□□□ 1.83
CLN3-205ENST00000359984 IP6K1Q92551 441 aa26.47■■□□□ 1.83
CLN3-205ENST00000359984 LTN1O94822 1766 aa26.47■■□□□ 1.83
CLN3-205ENST00000359984 ZBTB7CA1YPR0 619 aa26.47■■□□□ 1.83
CLN3-205ENST00000359984 CCDC146Q8IYE0 955 aa26.45■■□□□ 1.83
CLN3-205ENST00000359984 PHLPP1O60346 1717 aa26.44■■□□□ 1.82
CLN3-205ENST00000359984 SENP3-EIF4A1A0A087X0R7 540 aa26.44■■□□□ 1.82
CLN3-205ENST00000359984 COL16A1Q07092 1604 aaPredicted RBP26.43■■□□□ 1.82
CLN3-205ENST00000359984 CPDO75976 1380 aa26.39■■□□□ 1.82
CLN3-205ENST00000359984 RUNDC1Q96C34 613 aa26.39■■□□□ 1.82
CLN3-205ENST00000359984 KIAA0232Q92628 1395 aa26.39■■□□□ 1.81
CLN3-205ENST00000359984 HAP1P54257 671 aaPredicted RBP26.38■■□□□ 1.81
CLN3-205ENST00000359984 LTV1Q96GA3 475 aaPredicted RBP26.38■■□□□ 1.81
CLN3-205ENST00000359984 AXIN2Q9Y2T1 843 aa26.38■■□□□ 1.81
CLN3-205ENST00000359984 FCHSD2O94868 740 aa26.38■■□□□ 1.81
CLN3-205ENST00000359984 ABCA3Q99758 1704 aa26.38■■□□□ 1.81
CLN3-205ENST00000359984 HMOX1P09601 288 aa26.37■■□□□ 1.81
CLN3-205ENST00000359984 PLEKHF1Q96S99 279 aa26.37■■□□□ 1.81
CLN3-205ENST00000359984 ZBED9Q6R2W3 1325 aa26.37■■□□□ 1.81
CLN3-205ENST00000359984 RSPH6AQ9H0K4 717 aa26.36■■□□□ 1.81
CLN3-205ENST00000359984 APAF1O14727 1248 aa26.36■■□□□ 1.81
CLN3-205ENST00000359984 CHRNA2Q15822 529 aa26.36■■□□□ 1.81
CLN3-205ENST00000359984 COL22A1Q8NFW1 1626 aaPredicted RBP26.35■■□□□ 1.81
CLN3-205ENST00000359984 EYA1Q99502 592 aa26.35■■□□□ 1.81
CLN3-205ENST00000359984 RGPD1P0DJD0 1748 aa26.35■■□□□ 1.81
CLN3-205ENST00000359984 SULT6B1Q6IMI4 303 aa26.34■■□□□ 1.81
CLN3-205ENST00000359984 PNNQ9H307 717 aaKnown RBP26.34■■□□□ 1.81
CLN3-205ENST00000359984 SALL2Q9Y467 1007 aaPredicted RBP26.34■■□□□ 1.81
CLN3-205ENST00000359984 COL18A1P39060 1754 aa26.33■■□□□ 1.81
CLN3-205ENST00000359984 IGSF1Q8N6C5 1336 aa26.32■■□□□ 1.8
CLN3-205ENST00000359984 PRKAR2BP31323 418 aa26.32■■□□□ 1.8
CLN3-205ENST00000359984 AEBP1Q8IUX7 1158 aa26.32■■□□□ 1.8
CLN3-205ENST00000359984 PRDM11Q9NQV5 511 aa26.32■■□□□ 1.8
CLN3-205ENST00000359984 TCP11L2Q8N4U5 519 aa26.32■■□□□ 1.8
CLN3-205ENST00000359984 ANKRD24Q8TF21 1146 aa26.32■■□□□ 1.8
CLN3-205ENST00000359984 ABCC6O95255 1503 aa26.31■■□□□ 1.8
CLN3-205ENST00000359984 RGPD5Q99666 1765 aa26.28■■□□□ 1.8
CLN3-205ENST00000359984 NBPF6Q5VWK0 638 aa26.28■■□□□ 1.8
CLN3-205ENST00000359984 NBPF4Q96M43 638 aa26.28■■□□□ 1.8
CLN3-205ENST00000359984 MAPK8IP3Q9UPT6 1336 aa26.28■■□□□ 1.8
CLN3-205ENST00000359984 ERBB3P21860 1342 aa26.27■■□□□ 1.8
CLN3-205ENST00000359984 KDRP35968 1356 aa26.27■■□□□ 1.8
CLN3-205ENST00000359984 FAM83GA6ND36 823 aa26.27■■□□□ 1.8
CLN3-205ENST00000359984 PHACTR3Q96KR7 559 aa26.26■■□□□ 1.79
CLN3-205ENST00000359984 RRP7AQ9Y3A4 280 aaKnown RBP26.26■■□□□ 1.79
CLN3-205ENST00000359984 NGEFQ8N5V2 710 aa26.25■■□□□ 1.79
CLN3-205ENST00000359984 USHBP1Q8N6Y0 703 aa26.25■■□□□ 1.79
CLN3-205ENST00000359984 LMO7Q8WWI1 1683 aa26.24■■□□□ 1.79
CLN3-205ENST00000359984 CAMTA1Q9Y6Y1 1673 aa26.24■■□□□ 1.79
CLN3-205ENST00000359984 JCADQ9P266 1359 aa26.24■■□□□ 1.79
CLN3-205ENST00000359984 NEFMP07197 916 aa26.23■■□□□ 1.79
CLN3-205ENST00000359984 HSPA1LP34931 641 aa26.23■■□□□ 1.79
CLN3-205ENST00000359984 TMPOP42166 694 aaKnown RBP26.23■■□□□ 1.79
CLN3-205ENST00000359984 NEUROD2Q15784 382 aa26.23■■□□□ 1.79
CLN3-205ENST00000359984 RGPD2P0DJD1 1756 aa26.21■■□□□ 1.79
CLN3-205ENST00000359984 ZNF521Q96K83 1311 aa26.21■■□□□ 1.79
CLN3-205ENST00000359984 NUTM2BA6NNL0 878 aaPredicted RBP26.2■■□□□ 1.78
CLN3-205ENST00000359984 NUTM2EB1AL46 878 aaPredicted RBP26.2■■□□□ 1.78
CLN3-205ENST00000359984 NCBP3Q53F19 620 aaKnown RBP26.2■■□□□ 1.78
CLN3-205ENST00000359984 NUTM2AQ8IVF1 878 aaPredicted RBP26.2■■□□□ 1.78
CLN3-205ENST00000359984 NCAPD2Q15021 1401 aa26.2■■□□□ 1.78
CLN3-205ENST00000359984 CSB-PGBD3P0DP91 1061 aa26.19■■□□□ 1.78
CLN3-205ENST00000359984 ADAMTS2O95450 1211 aa26.19■■□□□ 1.78
CLN3-205ENST00000359984 NLRP2Q9NX02 1062 aa26.19■■□□□ 1.78
CLN3-205ENST00000359984 COL5A2P05997 1499 aaPredicted RBP26.18■■□□□ 1.78
CLN3-205ENST00000359984 NFE2L2Q16236 605 aa26.18■■□□□ 1.78
CLN3-205ENST00000359984 PHF23Q9BUL5 403 aaPredicted RBP26.18■■□□□ 1.78
CLN3-205ENST00000359984 RIPK4P57078 832 aa26.17■■□□□ 1.78
CLN3-205ENST00000359984 CCDC27Q2M243 656 aa26.17■■□□□ 1.78
CLN3-205ENST00000359984 WWC1Q8IX03 1113 aa26.17■■□□□ 1.78
CLN3-205ENST00000359984 COL14A1Q05707 1796 aaKnown RBP26.16■■□□□ 1.78
CLN3-205ENST00000359984 WDR17Q8IZU2 1322 aa26.15■■□□□ 1.78
CLN3-205ENST00000359984 PDE3BQ13370 1112 aa26.15■■□□□ 1.78
CLN3-205ENST00000359984 BTG4Q9NY30 223 aa26.15■■□□□ 1.78
CLN3-205ENST00000359984 TRIM35Q9UPQ4 493 aa26.14■■□□□ 1.78
CLN3-205ENST00000359984 FAM208AQ9UK61 1670 aaKnown RBP26.13■■□□□ 1.77
CLN3-205ENST00000359984 EVA1CP58658 441 aa26.13■■□□□ 1.77
CLN3-205ENST00000359984 CDCA7LQ96GN5 454 aa26.13■■□□□ 1.77
CLN3-205ENST00000359984 STRN4Q9NRL3 753 aa26.13■■□□□ 1.77
CLN3-205ENST00000359984 MTHFSDQ2M296 383 aaKnown RBP26.12■■□□□ 1.77
CLN3-205ENST00000359984 SPATA31A6Q5VVP1 1343 aa26.11■■□□□ 1.77
CLN3-205ENST00000359984 GOLGA2Q08379 1002 aa26.11■■□□□ 1.77
CLN3-205ENST00000359984 LARP1Q6PKG0 1096 aaKnown RBP26.11■■□□□ 1.77
CLN3-205ENST00000359984 TOM1L2Q6ZVM7 507 aa26.11■■□□□ 1.77
CLN3-205ENST00000359984 WDR63Q8IWG1 891 aa26.08■■□□□ 1.77
CLN3-205ENST00000359984 GAS2L2Q8NHY3 880 aa26.08■■□□□ 1.77
CLN3-205ENST00000359984 CARD10Q9BWT7 1032 aa26.08■■□□□ 1.77
CLN3-205ENST00000359984 SPINK5Q9NQ38 1064 aaPredicted RBP26.06■■□□□ 1.76
CLN3-205ENST00000359984 RAPGEF4Q8WZA2 1011 aa26.06■■□□□ 1.76
CLN3-205ENST00000359984 SLFN5Q08AF3 891 aa26.05■■□□□ 1.76
CLN3-205ENST00000359984 LRP6O75581 1613 aa26.05■■□□□ 1.76
CLN3-205ENST00000359984 PLCH1Q4KWH8 1693 aa26.05■■□□□ 1.76
CLN3-205ENST00000359984 LMOD3Q0VAK6 560 aa26.04■■□□□ 1.76
CLN3-205ENST00000359984 DLG5Q8TDM6 1919 aa26.04■■□□□ 1.76
CLN3-205ENST00000359984 CRB1P82279 1406 aa26.04■■□□□ 1.76
CLN3-205ENST00000359984 PLEKHO1Q53GL0 409 aaPredicted RBP26.04■■□□□ 1.76
CLN3-205ENST00000359984 GTF3C3Q9Y5Q9 886 aa26.04■■□□□ 1.76
CLN3-205ENST00000359984 E9PSI1 815 aa26.02■■□□□ 1.76
CLN3-205ENST00000359984 TATP17735 454 aaPredicted RBP26.02■■□□□ 1.76
CLN3-205ENST00000359984 AMOTQ4VCS5 1084 aa26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 348 ms