RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 ANP32CO43423 234 aa5.46□□□□□ -1.53
LIG4-201ENST00000356922 PRDM11Q9NQV5 511 aa5.46□□□□□ -1.53
LIG4-201ENST00000356922 AATKQ6ZMQ8 1374 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 EIF4A2Q14240 407 aaKnown RBP5.46□□□□□ -1.54
LIG4-201ENST00000356922 NBPF6Q5VWK0 638 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 LARP1Q6PKG0 1096 aaKnown RBP5.46□□□□□ -1.54
LIG4-201ENST00000356922 NBPF4Q96M43 638 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 NSD2O96028 1365 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 HAP1P54257 671 aaPredicted RBP5.46□□□□□ -1.54
LIG4-201ENST00000356922 RALBP1Q15311 655 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 AEBP1Q8IUX7 1158 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 KCNH5Q8NCM2 988 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 IP6K1Q92551 441 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 SHPRHQ149N8 1683 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 USP54Q70EL1 1684 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 ANKRD26Q9UPS8 1709 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 BCL9LQ86UU0 1499 aa5.46□□□□□ -1.54
LIG4-201ENST00000356922 IL13P35225 146 aa5.45□□□□□ -1.54
LIG4-201ENST00000356922 AMPHP49418 695 aa5.45□□□□□ -1.54
LIG4-201ENST00000356922 STRN4Q9NRL3 753 aa5.45□□□□□ -1.54
LIG4-201ENST00000356922 USP35Q9P2H5 1018 aa5.45□□□□□ -1.54
LIG4-201ENST00000356922 MYBBP1AQ9BQG0 1328 aaKnown RBP5.45□□□□□ -1.54
LIG4-201ENST00000356922 LTN1O94822 1766 aa5.45□□□□□ -1.54
LIG4-201ENST00000356922 CPDO75976 1380 aa5.45□□□□□ -1.54
LIG4-201ENST00000356922 NGLY1Q96IV0 654 aa5.45□□□□□ -1.54
LIG4-201ENST00000356922 EYA1Q99502 592 aa5.45□□□□□ -1.54
LIG4-201ENST00000356922 COL3A1P02461 1466 aaPredicted RBP5.45□□□□□ -1.54
LIG4-201ENST00000356922 RGPD2P0DJD1 1756 aa5.45□□□□□ -1.54
LIG4-201ENST00000356922 FNBP4Q8N3X1 1017 aaPredicted RBP5.44□□□□□ -1.54
LIG4-201ENST00000356922 PNISRQ8TF01 805 aaKnown RBP5.44□□□□□ -1.54
LIG4-201ENST00000356922 ADAMTS8Q9UP79 889 aa5.44□□□□□ -1.54
LIG4-201ENST00000356922 ERBB3P21860 1342 aa5.44□□□□□ -1.54
LIG4-201ENST00000356922 SPATA31A6Q5VVP1 1343 aa5.44□□□□□ -1.54
LIG4-201ENST00000356922 HMOX1P09601 288 aa5.44□□□□□ -1.54
LIG4-201ENST00000356922 ANKRD24Q8TF21 1146 aa5.44□□□□□ -1.54
LIG4-201ENST00000356922 LMO7Q8WWI1 1683 aa5.44□□□□□ -1.54
LIG4-201ENST00000356922 MYT1Q01538 1121 aa5.44□□□□□ -1.54
LIG4-201ENST00000356922 SMG6Q86US8 1419 aaKnown RBP5.44□□□□□ -1.54
LIG4-201ENST00000356922 SLIT2O94813 1529 aa5.44□□□□□ -1.54
LIG4-201ENST00000356922 PHACTR3Q96KR7 559 aa5.43□□□□□ -1.54
LIG4-201ENST00000356922 MRS2Q9HD23 443 aa5.43□□□□□ -1.54
LIG4-201ENST00000356922 AFF2P51816 1311 aa5.43□□□□□ -1.54
LIG4-201ENST00000356922 COL5A2P05997 1499 aaPredicted RBP5.43□□□□□ -1.54
LIG4-201ENST00000356922 POTEAQ6S8J7 498 aa5.43□□□□□ -1.54
LIG4-201ENST00000356922 INSRP06213 1382 aa5.43□□□□□ -1.54
LIG4-201ENST00000356922 FLT4P35916 1363 aa5.43□□□□□ -1.54
LIG4-201ENST00000356922 FAM9BQ8IZU0 186 aa5.43□□□□□ -1.54
LIG4-201ENST00000356922 U2SURPO15042 1029 aaKnown RBP5.43□□□□□ -1.54
LIG4-201ENST00000356922 USP21Q9UK80 565 aa5.43□□□□□ -1.54
LIG4-201ENST00000356922 DIAPH1O60610 1272 aaKnown RBP5.42□□□□□ -1.54
LIG4-201ENST00000356922 SULT6B1Q6IMI4 303 aa5.42□□□□□ -1.54
LIG4-201ENST00000356922 CCDC146Q8IYE0 955 aa5.42□□□□□ -1.54
LIG4-201ENST00000356922 NLRP2Q9NX02 1062 aa5.42□□□□□ -1.54
LIG4-201ENST00000356922 UNC5CLQ8IV45 518 aa5.42□□□□□ -1.54
LIG4-201ENST00000356922 WDR17Q8IZU2 1322 aa5.42□□□□□ -1.54
LIG4-201ENST00000356922 EVA1CP58658 441 aa5.42□□□□□ -1.54
LIG4-201ENST00000356922 FAM182BQ5T319 152 aa5.42□□□□□ -1.54
LIG4-201ENST00000356922 MEX3CQ5U5Q3 659 aaKnown RBP5.42□□□□□ -1.54
LIG4-201ENST00000356922 CDK12Q9NYV4 1490 aaPredicted RBP5.41□□□□□ -1.54
LIG4-201ENST00000356922 U2AF1L5P0DN76 240 aaPredicted RBP5.41□□□□□ -1.54
LIG4-201ENST00000356922 U2AF1Q01081 240 aaKnown RBP eCLIP5.41□□□□□ -1.54
LIG4-201ENST00000356922 TOM1L2Q6ZVM7 507 aa5.41□□□□□ -1.54
LIG4-201ENST00000356922 PLEKHF1Q96S99 279 aa5.41□□□□□ -1.54
LIG4-201ENST00000356922 QTRT2Q9H974 415 aaKnown RBP5.41□□□□□ -1.54
LIG4-201ENST00000356922 PLCH1Q4KWH8 1693 aa5.41□□□□□ -1.54
LIG4-201ENST00000356922 CSB-PGBD3P0DP91 1061 aa5.41□□□□□ -1.54
LIG4-201ENST00000356922 IGSF1Q8N6C5 1336 aa5.41□□□□□ -1.54
LIG4-201ENST00000356922 FAM98CQ17RN3 349 aaKnown RBP5.41□□□□□ -1.54
LIG4-201ENST00000356922 RSPH6AQ9H0K4 717 aa5.41□□□□□ -1.54
LIG4-201ENST00000356922 SPATA31A1Q5TZJ5 1347 aa5.4□□□□□ -1.54
LIG4-201ENST00000356922 NRAPQ86VF7 1730 aa5.4□□□□□ -1.54
LIG4-201ENST00000356922 SPATA31A5Q5VU36 1347 aa5.4□□□□□ -1.54
LIG4-201ENST00000356922 SPATA31A7Q8IWB4 1347 aa5.4□□□□□ -1.54
LIG4-201ENST00000356922 COL14A1Q05707 1796 aaKnown RBP5.4□□□□□ -1.54
LIG4-201ENST00000356922 RRP7AQ9Y3A4 280 aaKnown RBP5.4□□□□□ -1.54
LIG4-201ENST00000356922 SALL2Q9Y467 1007 aaPredicted RBP5.4□□□□□ -1.54
LIG4-201ENST00000356922 BLMP54132 1417 aaPredicted RBP5.4□□□□□ -1.54
LIG4-201ENST00000356922 RGPD1P0DJD0 1748 aa5.4□□□□□ -1.54
LIG4-201ENST00000356922 MEGF6O75095 1541 aa5.4□□□□□ -1.55
LIG4-201ENST00000356922 PRKAR2BP31323 418 aa5.4□□□□□ -1.55
LIG4-201ENST00000356922 GJD4Q96KN9 370 aaPredicted RBP5.4□□□□□ -1.55
LIG4-201ENST00000356922 RTL1A6NKG5 1358 aa5.4□□□□□ -1.55
LIG4-201ENST00000356922 FAM208AQ9UK61 1670 aaKnown RBP5.39□□□□□ -1.55
LIG4-201ENST00000356922 CCER2I3L3R5 266 aa5.39□□□□□ -1.55
LIG4-201ENST00000356922 VPS72Q15906 364 aa5.39□□□□□ -1.55
LIG4-201ENST00000356922 PTF1AQ7RTS3 328 aa5.39□□□□□ -1.55
LIG4-201ENST00000356922 CARD10Q9BWT7 1032 aa5.39□□□□□ -1.55
LIG4-201ENST00000356922 CCDC9Q9Y3X0 531 aaKnown RBP5.39□□□□□ -1.55
LIG4-201ENST00000356922 KIF24Q5T7B8 1368 aa5.39□□□□□ -1.55
LIG4-201ENST00000356922 MTHFSDQ2M296 383 aaKnown RBP5.39□□□□□ -1.55
LIG4-201ENST00000356922 KDRP35968 1356 aa5.39□□□□□ -1.55
LIG4-201ENST00000356922 GLI3P10071 1580 aa5.39□□□□□ -1.55
LIG4-201ENST00000356922 CRB1P82279 1406 aa5.39□□□□□ -1.55
LIG4-201ENST00000356922 NCAPD2Q15021 1401 aa5.39□□□□□ -1.55
LIG4-201ENST00000356922 APAF1O14727 1248 aa5.38□□□□□ -1.55
LIG4-201ENST00000356922 CYP27B1O15528 508 aa5.38□□□□□ -1.55
LIG4-201ENST00000356922 DCTN1Q14203 1278 aa5.38□□□□□ -1.55
LIG4-201ENST00000356922 NEUROD2Q15784 382 aa5.38□□□□□ -1.55
LIG4-201ENST00000356922 ATRNO75882 1429 aa5.38□□□□□ -1.55
LIG4-201ENST00000356922 CFAP53Q96M91 514 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms