RNA–Protein interactions for RNA: ENST00000355815.8

SREBF1-202, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SREBF1, Length 4,253 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-202ENST00000355815 AAMPQ13685 434 aa17.11■□□□□ 0.33
SREBF1-202ENST00000355815 RBM42Q9BTD8 480 aaKnown RBP17.11■□□□□ 0.33
SREBF1-202ENST00000355815 TTC37Q6PGP7 1564 aa17.11■□□□□ 0.33
SREBF1-202ENST00000355815 CSPP1Q1MSJ5 1256 aa17.1■□□□□ 0.33
SREBF1-202ENST00000355815 C16orf71Q8IYS4 520 aaPredicted RBP17.1■□□□□ 0.33
SREBF1-202ENST00000355815 PRPF40AO75400 957 aaKnown RBP17.1■□□□□ 0.33
SREBF1-202ENST00000355815 PANK2Q9BZ23 570 aa17.1■□□□□ 0.33
SREBF1-202ENST00000355815 UQCRHLA0A096LP55 91 aa17.09■□□□□ 0.33
SREBF1-202ENST00000355815 UQCRHP07919 91 aa17.09■□□□□ 0.33
SREBF1-202ENST00000355815 C9orf78Q9NZ63 289 aaPredicted RBP17.09■□□□□ 0.33
SREBF1-202ENST00000355815 PIK3C2GO75747 1445 aa17.09■□□□□ 0.33
SREBF1-202ENST00000355815 SURF6O75683 361 aaKnown RBP17.09■□□□□ 0.33
SREBF1-202ENST00000355815 PHF14O94880 888 aa17.09■□□□□ 0.33
SREBF1-202ENST00000355815 NEK4P51957 841 aa17.09■□□□□ 0.33
SREBF1-202ENST00000355815 ESCO1Q5FWF5 840 aa17.09■□□□□ 0.33
SREBF1-202ENST00000355815 ANKRD36BQ8N2N9 1353 aa17.09■□□□□ 0.33
SREBF1-202ENST00000355815 TRIM35Q9UPQ4 493 aa17.08■□□□□ 0.32
SREBF1-202ENST00000355815 ATP10AO60312 1499 aa17.08■□□□□ 0.32
SREBF1-202ENST00000355815 FOXO3O43524 673 aa17.07■□□□□ 0.32
SREBF1-202ENST00000355815 FBXW7Q969H0 707 aa17.07■□□□□ 0.32
SREBF1-202ENST00000355815 GCC1Q96CN9 775 aa17.07■□□□□ 0.32
SREBF1-202ENST00000355815 CT47B1P0C2W7 299 aaPredicted RBP17.07■□□□□ 0.32
SREBF1-202ENST00000355815 INTS3Q68E01 1043 aaKnown RBP17.07■□□□□ 0.32
SREBF1-202ENST00000355815 BLMP54132 1417 aaPredicted RBP17.07■□□□□ 0.32
SREBF1-202ENST00000355815 HSP90B1P14625 803 aaKnown RBP17.07■□□□□ 0.32
SREBF1-202ENST00000355815 TBC1D32Q96NH3 1257 aa17.07■□□□□ 0.32
SREBF1-202ENST00000355815 ZNF692Q9BU19 519 aaPredicted RBP17.07■□□□□ 0.32
SREBF1-202ENST00000355815 IFT57Q9NWB7 429 aa17.06■□□□□ 0.32
SREBF1-202ENST00000355815 MAP7D2Q96T17 732 aa17.06■□□□□ 0.32
SREBF1-202ENST00000355815 ADGBQ8N7X0 1667 aa17.06■□□□□ 0.32
SREBF1-202ENST00000355815 REC8O95072 547 aa17.06■□□□□ 0.32
SREBF1-202ENST00000355815 GNL2Q13823 731 aaKnown RBP17.05■□□□□ 0.32
SREBF1-202ENST00000355815 ANXA1P04083 346 aa17.05■□□□□ 0.32
SREBF1-202ENST00000355815 UBTFL1P0CB47 393 aaPredicted RBP17.05■□□□□ 0.32
SREBF1-202ENST00000355815 HDGFL1Q5TGJ6 251 aa17.05■□□□□ 0.32
SREBF1-202ENST00000355815 C1orf141Q5JVX7 400 aa17.05■□□□□ 0.32
SREBF1-202ENST00000355815 PTPRTO14522 1441 aa17.05■□□□□ 0.32
SREBF1-202ENST00000355815 ZNF521Q96K83 1311 aa17.04■□□□□ 0.32
SREBF1-202ENST00000355815 CDC42BPAQ5VT25 1732 aa17.04■□□□□ 0.32
SREBF1-202ENST00000355815 NINLQ9Y2I6 1382 aa17.04■□□□□ 0.32
SREBF1-202ENST00000355815 AMOTL2Q9Y2J4 779 aa17.04■□□□□ 0.32
SREBF1-202ENST00000355815 MAST1Q9Y2H9 1570 aa17.03■□□□□ 0.32
SREBF1-202ENST00000355815 ZMYM4Q5VZL5 1548 aa17.03■□□□□ 0.32
SREBF1-202ENST00000355815 ACEP12821 1306 aa17.03■□□□□ 0.32
SREBF1-202ENST00000355815 CREBRFQ8IUR6 639 aa17.03■□□□□ 0.32
SREBF1-202ENST00000355815 CFAP44Q96MT7 982 aa17.03■□□□□ 0.32
SREBF1-202ENST00000355815 VAMP4O75379 141 aa17.03■□□□□ 0.32
SREBF1-202ENST00000355815 DDX54Q8TDD1 881 aaKnown RBP17.03■□□□□ 0.32
SREBF1-202ENST00000355815 LARP6Q9BRS8 491 aaKnown RBP17.03■□□□□ 0.32
SREBF1-202ENST00000355815 MEIS3Q99687 375 aa17.02■□□□□ 0.32
SREBF1-202ENST00000355815 ZNF518AQ6AHZ1 1483 aa17.02■□□□□ 0.32
SREBF1-202ENST00000355815 CBX1P83916 185 aa17.02■□□□□ 0.32
SREBF1-202ENST00000355815 TBC1D9Q6ZT07 1266 aa17.02■□□□□ 0.32
SREBF1-202ENST00000355815 KDM5DQ9BY66 1539 aa17.02■□□□□ 0.32
SREBF1-202ENST00000355815 NLRP2Q9NX02 1062 aa17.02■□□□□ 0.31
SREBF1-202ENST00000355815 NPATQ14207 1427 aa17.02■□□□□ 0.31
SREBF1-202ENST00000355815 SPC24Q8NBT2 197 aa17.01■□□□□ 0.31
SREBF1-202ENST00000355815 UPF3BQ9BZI7 483 aaKnown RBP17.01■□□□□ 0.31
SREBF1-202ENST00000355815 BECN2A8MW95 431 aa17.01■□□□□ 0.31
SREBF1-202ENST00000355815 CCDC173Q0VFZ6 552 aa17.01■□□□□ 0.31
SREBF1-202ENST00000355815 NUTM1Q86Y26 1132 aa17.01■□□□□ 0.31
SREBF1-202ENST00000355815 ATP7AQ04656 1500 aa17.01■□□□□ 0.31
SREBF1-202ENST00000355815 GNAI2P04899 355 aa17■□□□□ 0.31
SREBF1-202ENST00000355815 ALDH1L2Q3SY69 923 aa17■□□□□ 0.31
SREBF1-202ENST00000355815 ZBTB40Q9NUA8 1239 aa17■□□□□ 0.31
SREBF1-202ENST00000355815 ARHGEF5Q12774 1597 aa17■□□□□ 0.31
SREBF1-202ENST00000355815 VPS37CA5D8V6 355 aaPredicted RBP17■□□□□ 0.31
SREBF1-202ENST00000355815 GOLGA6L19H0YKK7 550 aa17■□□□□ 0.31
SREBF1-202ENST00000355815 NUCB2P80303 420 aa16.99■□□□□ 0.31
SREBF1-202ENST00000355815 CCDC27Q2M243 656 aa16.99■□□□□ 0.31
SREBF1-202ENST00000355815 CCDC30Q5VVM6 783 aa16.99■□□□□ 0.31
SREBF1-202ENST00000355815 DIAPH3Q9NSV4 1193 aa16.99■□□□□ 0.31
SREBF1-202ENST00000355815 K7ELQ4 463 aaPredicted RBP16.99■□□□□ 0.31
SREBF1-202ENST00000355815 TRMT2AQ8IZ69 625 aaKnown RBP16.99■□□□□ 0.31
SREBF1-202ENST00000355815 SIL1Q9H173 461 aa16.99■□□□□ 0.31
SREBF1-202ENST00000355815 ZC3H6P61129 1189 aaKnown RBP16.99■□□□□ 0.31
SREBF1-202ENST00000355815 GAS2L2Q8NHY3 880 aa16.99■□□□□ 0.31
SREBF1-202ENST00000355815 ERVK-7P63135 1459 aa16.98■□□□□ 0.31
SREBF1-202ENST00000355815 EIF4A2Q14240 407 aaKnown RBP16.98■□□□□ 0.31
SREBF1-202ENST00000355815 EIF2AK4Q9P2K8 1649 aaKnown RBP16.98■□□□□ 0.31
SREBF1-202ENST00000355815 OTUD7AQ8TE49 926 aaPredicted RBP16.98■□□□□ 0.31
SREBF1-202ENST00000355815 CCDC39Q9UFE4 941 aa16.98■□□□□ 0.31
SREBF1-202ENST00000355815 SSFA2P28290 1259 aa16.98■□□□□ 0.31
SREBF1-202ENST00000355815 TRERF1Q96PN7 1200 aa16.97■□□□□ 0.31
SREBF1-202ENST00000355815 MRPL50Q8N5N7 158 aaKnown RBP16.97■□□□□ 0.31
SREBF1-202ENST00000355815 IFIT2P09913 472 aaKnown RBP16.97■□□□□ 0.31
SREBF1-202ENST00000355815 FOSBP53539 338 aa16.97■□□□□ 0.31
SREBF1-202ENST00000355815 ZSCAN30Q86W11 494 aa16.97■□□□□ 0.31
SREBF1-202ENST00000355815 XRCC6P12956 609 aaKnown RBP eCLIP16.96■□□□□ 0.313e-7■■□□□ 13.3
SREBF1-202ENST00000355815 NUCB1Q02818 461 aa16.96■□□□□ 0.31
SREBF1-202ENST00000355815 DTNBO60941 627 aa16.96■□□□□ 0.31
SREBF1-202ENST00000355815 ZNF530Q6P9A1 599 aaPredicted RBP16.96■□□□□ 0.31
SREBF1-202ENST00000355815 MTERF4Q7Z6M4 381 aaKnown RBP16.96■□□□□ 0.31
SREBF1-202ENST00000355815 HOMER1Q86YM7 354 aa16.96■□□□□ 0.31
SREBF1-202ENST00000355815 SRGAP3O43295 1099 aa16.96■□□□□ 0.31
SREBF1-202ENST00000355815 HDAC1Q13547 482 aaPredicted RBP16.96■□□□□ 0.3
SREBF1-202ENST00000355815 GNAI3P08754 354 aa16.95■□□□□ 0.3
SREBF1-202ENST00000355815 SKIDA1Q1XH10 827 aa16.95■□□□□ 0.3
SREBF1-202ENST00000355815 ABCC11Q96J66 1382 aa16.95■□□□□ 0.3
SREBF1-202ENST00000355815 NPC1L1Q9UHC9 1359 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms