RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 FIBPO43427 364 aa21.46■■□□□ 1.03
COL18A1-202ENST00000355480 PIP4K2BP78356 416 aa21.46■■□□□ 1.03
COL18A1-202ENST00000355480 STK3Q13188 491 aa21.46■■□□□ 1.03
COL18A1-202ENST00000355480 HSP90B2PQ58FF3 399 aa21.46■■□□□ 1.03
COL18A1-202ENST00000355480 TRIM22Q8IYM9 498 aa21.46■■□□□ 1.03
COL18A1-202ENST00000355480 RDXP35241 583 aaKnown RBP21.46■■□□□ 1.03
COL18A1-202ENST00000355480 MAP4K4O95819 1239 aaPredicted RBP21.46■■□□□ 1.03
COL18A1-202ENST00000355480 CCDC39Q9UFE4 941 aa21.46■■□□□ 1.03
COL18A1-202ENST00000355480 NFKBIBQ15653 356 aa21.45■■□□□ 1.03
COL18A1-202ENST00000355480 PAF1Q8N7H5 531 aa21.45■■□□□ 1.03
COL18A1-202ENST00000355480 BCAR3O75815 825 aa21.45■■□□□ 1.02
COL18A1-202ENST00000355480 CCDC69A6NI79 296 aa21.45■■□□□ 1.02
COL18A1-202ENST00000355480 MBD3O95983 291 aa21.45■■□□□ 1.02
COL18A1-202ENST00000355480 SYCP1Q15431 976 aa21.45■■□□□ 1.02
COL18A1-202ENST00000355480 XPCQ01831 940 aaPredicted RBP21.44■■□□□ 1.02
COL18A1-202ENST00000355480 FKBP4Q02790 459 aaKnown RBP eCLIP21.44■■□□□ 1.023e-6■■■■■ 29.7
COL18A1-202ENST00000355480 SMARCE1Q969G3 411 aa21.44■■□□□ 1.02
COL18A1-202ENST00000355480 PRPF40AO75400 957 aaKnown RBP21.44■■□□□ 1.02
COL18A1-202ENST00000355480 RRS1Q15050 365 aaKnown RBP21.44■■□□□ 1.02
COL18A1-202ENST00000355480 PLEKHH2Q8IVE3 1493 aa21.44■■□□□ 1.02
COL18A1-202ENST00000355480 BTBD11A6QL63 1104 aa21.44■■□□□ 1.02
COL18A1-202ENST00000355480 RAPGEF3O95398 923 aa21.44■■□□□ 1.02
COL18A1-202ENST00000355480 ZSCAN25Q6NSZ9 544 aa21.44■■□□□ 1.02
COL18A1-202ENST00000355480 JMYQ8N9B5 988 aa21.44■■□□□ 1.02
COL18A1-202ENST00000355480 NUP133Q8WUM0 1156 aa21.44■■□□□ 1.02
COL18A1-202ENST00000355480 PIP4K2AP48426 406 aaPredicted RBP21.42■■□□□ 1.02
COL18A1-202ENST00000355480 AACSQ86V21 672 aa21.42■■□□□ 1.02
COL18A1-202ENST00000355480 MRE11P49959 708 aa21.42■■□□□ 1.02
COL18A1-202ENST00000355480 ANKRD1Q15327 319 aa21.42■■□□□ 1.02
COL18A1-202ENST00000355480 SOGA3Q5TF21 947 aa21.42■■□□□ 1.02
COL18A1-202ENST00000355480 ZHX3Q9H4I2 956 aa21.42■■□□□ 1.02
COL18A1-202ENST00000355480 KIAA1107Q9UPP5 1409 aa21.41■■□□□ 1.02
COL18A1-202ENST00000355480 TSPY26PQ9H489 355 aa21.41■■□□□ 1.02
COL18A1-202ENST00000355480 TRAK2O60296 914 aa21.4■■□□□ 1.02
COL18A1-202ENST00000355480 BICDL1Q6ZP65 573 aa21.4■■□□□ 1.02
COL18A1-202ENST00000355480 ZSCAN29Q8IWY8 852 aaPredicted RBP21.4■■□□□ 1.02
COL18A1-202ENST00000355480 SRGAP3O43295 1099 aa21.4■■□□□ 1.02
COL18A1-202ENST00000355480 WDR63Q8IWG1 891 aa21.4■■□□□ 1.02
COL18A1-202ENST00000355480 MYO6Q9UM54 1294 aa21.4■■□□□ 1.02
COL18A1-202ENST00000355480 ERBINQ96RT1 1412 aa21.39■■□□□ 1.02
COL18A1-202ENST00000355480 CEP126Q9P2H0 1117 aa21.39■■□□□ 1.02
COL18A1-202ENST00000355480 ZC3H6P61129 1189 aaKnown RBP21.39■■□□□ 1.02
COL18A1-202ENST00000355480 ATF7IPQ6VMQ6 1270 aa21.39■■□□□ 1.02
COL18A1-202ENST00000355480 NCAPD3P42695 1498 aa21.39■■□□□ 1.01
COL18A1-202ENST00000355480 CT47B1P0C2W7 299 aaPredicted RBP21.38■■□□□ 1.01
COL18A1-202ENST00000355480 RAI14Q9P0K7 980 aa21.38■■□□□ 1.01
COL18A1-202ENST00000355480 TDO2P48775 406 aa21.38■■□□□ 1.01
COL18A1-202ENST00000355480 PDCL3Q9H2J4 239 aa21.38■■□□□ 1.01
COL18A1-202ENST00000355480 AEBP1Q8IUX7 1158 aa21.37■■□□□ 1.01
COL18A1-202ENST00000355480 POGZQ7Z3K3 1410 aa21.37■■□□□ 1.01
COL18A1-202ENST00000355480 ME1P48163 572 aa21.37■■□□□ 1.01
COL18A1-202ENST00000355480 ATAD2Q6PL18 1390 aa21.36■■□□□ 1.01
COL18A1-202ENST00000355480 RPGRIP1LQ68CZ1 1315 aa21.36■■□□□ 1.01
COL18A1-202ENST00000355480 CCDC85AQ96PX6 553 aaPredicted RBP21.36■■□□□ 1.01
COL18A1-202ENST00000355480 ZNHIT6Q9NWK9 470 aaKnown RBP21.36■■□□□ 1.01
COL18A1-202ENST00000355480 STIM1Q13586 685 aa21.35■■□□□ 1.01
COL18A1-202ENST00000355480 UBAC1Q9BSL1 405 aa21.35■■□□□ 1.01
COL18A1-202ENST00000355480 SPINK5Q9NQ38 1064 aaPredicted RBP21.35■■□□□ 1.01
COL18A1-202ENST00000355480 SERPINC1P01008 464 aa21.35■■□□□ 1.01
COL18A1-202ENST00000355480 ERCC4Q92889 916 aaPredicted RBP21.35■■□□□ 1.01
COL18A1-202ENST00000355480 IGHMBP2P38935 993 aaKnown RBP21.35■■□□□ 1.01
COL18A1-202ENST00000355480 MVPQ14764 893 aaKnown RBP21.35■■□□□ 1.01
COL18A1-202ENST00000355480 NBPF8Q3BBV2 869 aa21.35■■□□□ 1.01
COL18A1-202ENST00000355480 NOL7Q9UMY1 257 aaKnown RBP21.35■■□□□ 1.01
COL18A1-202ENST00000355480 LRP2BPQ9P2M1 347 aa21.34■■□□□ 1.01
COL18A1-202ENST00000355480 SKIDA1Q1XH10 827 aa21.34■■□□□ 1.01
COL18A1-202ENST00000355480 CCP110O43303 1012 aa21.34■■□□□ 1.01
COL18A1-202ENST00000355480 BLOC1S2Q6QNY1 142 aa21.34■■□□□ 1.01
COL18A1-202ENST00000355480 TANGO6Q9C0B7 1094 aa21.34■■□□□ 1.01
COL18A1-202ENST00000355480 IL1RAPL2Q9NP60 686 aa21.33■■□□□ 1.01
COL18A1-202ENST00000355480 CTNNA3Q9UI47 895 aa21.33■■□□□ 1.01
COL18A1-202ENST00000355480 LARP1BQ659C4 914 aaKnown RBP21.33■■□□□ 1
COL18A1-202ENST00000355480 STARD3NLO95772 234 aa21.33■■□□□ 1
COL18A1-202ENST00000355480 DACH1Q9UI36 760 aa21.33■■□□□ 1
COL18A1-202ENST00000355480 CWC27Q6UX04 472 aaKnown RBP21.32■■□□□ 1
COL18A1-202ENST00000355480 CHD1LQ86WJ1 897 aa21.32■■□□□ 1
COL18A1-202ENST00000355480 CDKL5O76039 1030 aa21.32■■□□□ 1
COL18A1-202ENST00000355480 FCHSD2O94868 740 aa21.32■■□□□ 1
COL18A1-202ENST00000355480 MRC2Q9UBG0 1479 aa21.32■■□□□ 1
COL18A1-202ENST00000355480 EHBP1L1Q8N3D4 1523 aa21.32■■□□□ 1
COL18A1-202ENST00000355480 GNAT3A8MTJ3 354 aa21.32■■□□□ 1
COL18A1-202ENST00000355480 NUDT16Q96DE0 195 aaKnown RBP21.32■■□□□ 1
COL18A1-202ENST00000355480 WDR33Q9C0J8 1336 aaKnown RBP21.32■■□□□ 1
COL18A1-202ENST00000355480 VSIG10Q8N0Z9 540 aa21.31■■□□□ 1
COL18A1-202ENST00000355480 IDH1O75874 414 aaKnown RBP21.31■■□□□ 1
COL18A1-202ENST00000355480 TNMDQ9H2S6 317 aa21.31■■□□□ 1
COL18A1-202ENST00000355480 TROQ12816 1431 aaPredicted RBP21.31■■□□□ 1
COL18A1-202ENST00000355480 KRT85P78386 507 aa21.31■■□□□ 1
COL18A1-202ENST00000355480 SSBP05455 408 aaKnown RBP eCLIP21.31■■□□□ 1
COL18A1-202ENST00000355480 ANKRD30BQ9BXX2 1392 aa21.3■■□□□ 1
COL18A1-202ENST00000355480 ARAP1Q96P48 1450 aa21.3■■□□□ 1
COL18A1-202ENST00000355480 IFT140Q96RY7 1462 aa21.3■■□□□ 1
COL18A1-202ENST00000355480 SPC24Q8NBT2 197 aa21.3■■□□□ 1
COL18A1-202ENST00000355480 KCNH5Q8NCM2 988 aa21.3■■□□□ 1
COL18A1-202ENST00000355480 DEF6Q9H4E7 631 aa21.3■■□□□ 1
COL18A1-202ENST00000355480 ERICH3Q5RHP9 1530 aa21.3■■□□□ 1
COL18A1-202ENST00000355480 PDRG1Q9NUG6 133 aa21.3■■□□□ 1
COL18A1-202ENST00000355480 PPFIBP1Q86W92 1011 aa21.3■■□□□ 1
COL18A1-202ENST00000355480 CCDC192P0DO97 292 aa21.3■■□□□ 1
COL18A1-202ENST00000355480 JAKMIP1Q96N16 626 aaKnown RBP21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms