RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 C1orf141Q5JVX7 400 aa14.12□□□□□ -0.15
SVIP-201ENST00000354193 TSPYL6Q8N831 410 aa14.12□□□□□ -0.15
SVIP-201ENST00000354193 TRIM35Q9UPQ4 493 aa14.12□□□□□ -0.15
SVIP-201ENST00000354193 PRDM11Q9NQV5 511 aa14.12□□□□□ -0.15
SVIP-201ENST00000354193 SIRT1Q96EB6 747 aa14.12□□□□□ -0.15
SVIP-201ENST00000354193 LAMC1P11047 1609 aa14.12□□□□□ -0.15
SVIP-201ENST00000354193 ZNF530Q6P9A1 599 aaPredicted RBP14.11□□□□□ -0.15
SVIP-201ENST00000354193 RAPGEF4Q8WZA2 1011 aa14.11□□□□□ -0.15
SVIP-201ENST00000354193 GCP02774 474 aa14.11□□□□□ -0.15
SVIP-201ENST00000354193 STK31Q9BXU1 1019 aa14.11□□□□□ -0.15
SVIP-201ENST00000354193 MPRIPQ6WCQ1 1025 aa14.11□□□□□ -0.15
SVIP-201ENST00000354193 BLMP54132 1417 aaPredicted RBP14.1□□□□□ -0.15
SVIP-201ENST00000354193 CADPS2Q86UW7 1296 aa14.1□□□□□ -0.15
SVIP-201ENST00000354193 NPHP4O75161 1426 aaPredicted RBP14.1□□□□□ -0.15
SVIP-201ENST00000354193 MBIPQ9NS73 344 aa14.1□□□□□ -0.15
SVIP-201ENST00000354193 NKTRP30414 1462 aaKnown RBP14.09□□□□□ -0.15
SVIP-201ENST00000354193 TMEM94Q12767 1356 aa14.09□□□□□ -0.15
SVIP-201ENST00000354193 POLR1AO95602 1720 aaPredicted RBP14.09□□□□□ -0.15
SVIP-201ENST00000354193 MTHFSDQ2M296 383 aaKnown RBP14.09□□□□□ -0.15
SVIP-201ENST00000354193 NUTM2BA6NNL0 878 aaPredicted RBP14.09□□□□□ -0.15
SVIP-201ENST00000354193 NUTM2EB1AL46 878 aaPredicted RBP14.09□□□□□ -0.15
SVIP-201ENST00000354193 RLBP1P12271 317 aa14.09□□□□□ -0.15
SVIP-201ENST00000354193 NUTM2AQ8IVF1 878 aaPredicted RBP14.09□□□□□ -0.15
SVIP-201ENST00000354193 TTC21AQ8NDW8 1320 aa14.09□□□□□ -0.15
SVIP-201ENST00000354193 ZNF335Q9H4Z2 1342 aaPredicted RBP14.09□□□□□ -0.15
SVIP-201ENST00000354193 FAM135BQ49AJ0 1406 aa14.08□□□□□ -0.16
SVIP-201ENST00000354193 RIMS1Q86UR5 1692 aaKnown RBP14.08□□□□□ -0.16
SVIP-201ENST00000354193 HOXC9P31274 260 aa14.08□□□□□ -0.16
SVIP-201ENST00000354193 MS4A1P11836 297 aa14.08□□□□□ -0.16
SVIP-201ENST00000354193 C8orf58Q8NAV2 365 aa14.08□□□□□ -0.16
SVIP-201ENST00000354193 GAS2L2Q8NHY3 880 aa14.07□□□□□ -0.16
SVIP-201ENST00000354193 SLC4A2P04920 1241 aa14.07□□□□□ -0.16
SVIP-201ENST00000354193 FKBP5Q13451 457 aaPredicted RBP14.07□□□□□ -0.16
SVIP-201ENST00000354193 TOM1L2Q6ZVM7 507 aa14.07□□□□□ -0.16
SVIP-201ENST00000354193 DDX54Q8TDD1 881 aaKnown RBP14.07□□□□□ -0.16
SVIP-201ENST00000354193 KCNH5Q8NCM2 988 aa14.07□□□□□ -0.16
SVIP-201ENST00000354193 KIAA1210Q9ULL0 1709 aa14.06□□□□□ -0.16
SVIP-201ENST00000354193 ANKRD24Q8TF21 1146 aa14.06□□□□□ -0.16
SVIP-201ENST00000354193 TMEM57Q8N5G2 664 aa14.06□□□□□ -0.16
SVIP-201ENST00000354193 USP6P35125 1406 aa14.06□□□□□ -0.16
SVIP-201ENST00000354193 SYTL4Q96C24 671 aaPredicted RBP14.06□□□□□ -0.16
SVIP-201ENST00000354193 PLEKHF1Q96S99 279 aa14.06□□□□□ -0.16
SVIP-201ENST00000354193 ATF7IPQ6VMQ6 1270 aa14.05□□□□□ -0.16
SVIP-201ENST00000354193 TRIM27P14373 513 aa14.05□□□□□ -0.16
SVIP-201ENST00000354193 ANXA1P04083 346 aa14.05□□□□□ -0.16
SVIP-201ENST00000354193 AIMP1Q12904 312 aaKnown RBP14.05□□□□□ -0.16
SVIP-201ENST00000354193 RWDD1Q9H446 243 aaPredicted RBP14.05□□□□□ -0.16
SVIP-201ENST00000354193 MSH6P52701 1360 aa14.05□□□□□ -0.16
SVIP-201ENST00000354193 ADAMTS2O95450 1211 aa14.05□□□□□ -0.16
SVIP-201ENST00000354193 ZNF521Q96K83 1311 aa14.04□□□□□ -0.16
SVIP-201ENST00000354193 FLT4P35916 1363 aa14.04□□□□□ -0.16
SVIP-201ENST00000354193 GNAT3A8MTJ3 354 aa14.04□□□□□ -0.16
SVIP-201ENST00000354193 NBPF6Q5VWK0 638 aa14.04□□□□□ -0.16
SVIP-201ENST00000354193 NBPF4Q96M43 638 aa14.04□□□□□ -0.16
SVIP-201ENST00000354193 ARHGEF28Q8N1W1 1705 aaKnown RBP14.04□□□□□ -0.16
SVIP-201ENST00000354193 F6X3S4 739 aa14.04□□□□□ -0.16
SVIP-201ENST00000354193 FER1L4A9Z1Z3 1794 aa14.04□□□□□ -0.16
SVIP-201ENST00000354193 CENPQQ7L2Z9 268 aaPredicted RBP14.03□□□□□ -0.16
SVIP-201ENST00000354193 CPS1P31327 1500 aa14.03□□□□□ -0.16
SVIP-201ENST00000354193 PLEKHO1Q53GL0 409 aaPredicted RBP14.02□□□□□ -0.16
SVIP-201ENST00000354193 REREQ9P2R6 1566 aa14.02□□□□□ -0.16
SVIP-201ENST00000354193 KIF16BQ96L93 1317 aa14.02□□□□□ -0.16
SVIP-201ENST00000354193 ATP7BP35670 1465 aa14.02□□□□□ -0.16
SVIP-201ENST00000354193 PDE3AQ14432 1141 aa14.02□□□□□ -0.16
SVIP-201ENST00000354193 CFAP44Q96MT7 982 aa14.02□□□□□ -0.16
SVIP-201ENST00000354193 LNPKQ9C0E8 428 aa14.02□□□□□ -0.16
SVIP-201ENST00000354193 PDE4AP27815 886 aa14.02□□□□□ -0.17
SVIP-201ENST00000354193 NBR1Q14596 966 aa14.02□□□□□ -0.17
SVIP-201ENST00000354193 DDX19BQ9UMR2 479 aa14.02□□□□□ -0.17
SVIP-201ENST00000354193 ANKRD45Q5TZF3 282 aa14.01□□□□□ -0.17
SVIP-201ENST00000354193 IGHDP01880 384 aa14.01□□□□□ -0.17
SVIP-201ENST00000354193 HDGFL1Q5TGJ6 251 aa14.01□□□□□ -0.17
SVIP-201ENST00000354193 NPHP3Q7Z494 1330 aa14□□□□□ -0.17
SVIP-201ENST00000354193 CCDC27Q2M243 656 aa14□□□□□ -0.17
SVIP-201ENST00000354193 IFT57Q9NWB7 429 aa14□□□□□ -0.17
SVIP-201ENST00000354193 NEURL4Q96JN8 1562 aa14□□□□□ -0.17
SVIP-201ENST00000354193 CD163L1Q9NR16 1453 aa14□□□□□ -0.17
SVIP-201ENST00000354193 MVPQ14764 893 aaKnown RBP14□□□□□ -0.17
SVIP-201ENST00000354193 SLAIN2Q9P270 581 aa14□□□□□ -0.17
SVIP-201ENST00000354193 IFT172Q9UG01 1749 aa14□□□□□ -0.17
SVIP-201ENST00000354193 KDM4FA0A1W2PPD8 638 aa14□□□□□ -0.17
SVIP-201ENST00000354193 AEBP2Q6ZN18 517 aaPredicted RBP14□□□□□ -0.17
SVIP-201ENST00000354193 TATP17735 454 aaPredicted RBP13.99□□□□□ -0.17
SVIP-201ENST00000354193 LGR6Q9HBX8 967 aa13.99□□□□□ -0.17
SVIP-201ENST00000354193 CPSF1Q10570 1443 aaKnown RBP13.99□□□□□ -0.17
SVIP-201ENST00000354193 PCDHB15Q9Y5E8 787 aa13.99□□□□□ -0.17
SVIP-201ENST00000354193 SLC39A6Q13433 755 aa13.99□□□□□ -0.17
SVIP-201ENST00000354193 IP6K1Q92551 441 aa13.99□□□□□ -0.17
SVIP-201ENST00000354193 CEP170BQ9Y4F5 1589 aaPredicted RBP13.98□□□□□ -0.17
SVIP-201ENST00000354193 UPF2Q9HAU5 1272 aaKnown RBP13.98□□□□□ -0.17
SVIP-201ENST00000354193 BTBD11A6QL63 1104 aa13.98□□□□□ -0.17
SVIP-201ENST00000354193 VAMP4O75379 141 aa13.98□□□□□ -0.17
SVIP-201ENST00000354193 PIP4K2AP48426 406 aaPredicted RBP13.98□□□□□ -0.17
SVIP-201ENST00000354193 C3P01024 1663 aa13.98□□□□□ -0.17
SVIP-201ENST00000354193 SLC4A3P48751 1232 aa13.97□□□□□ -0.17
SVIP-201ENST00000354193 SBNO1A3KN83 1393 aa13.97□□□□□ -0.17
SVIP-201ENST00000354193 OS9Q13438 667 aaPredicted RBP13.97□□□□□ -0.17
SVIP-201ENST00000354193 RTL5Q5HYW3 569 aaPredicted RBP13.97□□□□□ -0.17
SVIP-201ENST00000354193 TTC5Q8N0Z6 440 aa13.97□□□□□ -0.17
SVIP-201ENST00000354193 API5Q9BZZ5 524 aaKnown RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms