RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 NSD2O96028 1365 aa20.03■□□□□ 0.8
SMARCA4-201ENST00000344626 TSPOAP1O95153 1857 aa20.03■□□□□ 0.8
SMARCA4-201ENST00000344626 AMER1Q5JTC6 1135 aaPredicted RBP20.03■□□□□ 0.8
SMARCA4-201ENST00000344626 ZFYVE16Q7Z3T8 1539 aa20.02■□□□□ 0.8
SMARCA4-201ENST00000344626 MARCH6O60337 910 aa20.02■□□□□ 0.8
SMARCA4-201ENST00000344626 TRDNQ13061 729 aa20.02■□□□□ 0.79
SMARCA4-201ENST00000344626 RNF20Q5VTR2 975 aa20.02■□□□□ 0.79
SMARCA4-201ENST00000344626 WWC3Q9ULE0 1092 aa20.02■□□□□ 0.79
SMARCA4-201ENST00000344626 RBM5P52756 815 aaKnown RBP eCLIP20.01■□□□□ 0.79
SMARCA4-201ENST00000344626 HSP90AB2PQ58FF8 381 aa20.01■□□□□ 0.79
SMARCA4-201ENST00000344626 SURF6O75683 361 aaKnown RBP20.01■□□□□ 0.79
SMARCA4-201ENST00000344626 WASHC4Q2M389 1173 aa20.01■□□□□ 0.79
SMARCA4-201ENST00000344626 RFC4P35249 363 aa20.01■□□□□ 0.79
SMARCA4-201ENST00000344626 CCT4P50991 539 aaKnown RBP20.01■□□□□ 0.79
SMARCA4-201ENST00000344626 PTPRKQ15262 1439 aa20■□□□□ 0.79
SMARCA4-201ENST00000344626 CCDC57Q2TAC2 916 aa20■□□□□ 0.79
SMARCA4-201ENST00000344626 ERC1Q8IUD2 1116 aa20■□□□□ 0.79
SMARCA4-201ENST00000344626 USP21Q9UK80 565 aa20■□□□□ 0.79
SMARCA4-201ENST00000344626 RASSF8Q8NHQ8 419 aa19.99■□□□□ 0.79
SMARCA4-201ENST00000344626 CLASRPQ8N2M8 674 aaKnown RBP19.99■□□□□ 0.79
SMARCA4-201ENST00000344626 TTC21AQ8NDW8 1320 aa19.99■□□□□ 0.79
SMARCA4-201ENST00000344626 SRCIN1Q9C0H9 1055 aa19.98■□□□□ 0.79
SMARCA4-201ENST00000344626 ATP7AQ04656 1500 aa19.98■□□□□ 0.79
SMARCA4-201ENST00000344626 TAF7Q15545 349 aaPredicted RBP19.98■□□□□ 0.79
SMARCA4-201ENST00000344626 FAM161AQ3B820 660 aa19.98■□□□□ 0.79
SMARCA4-201ENST00000344626 SYAP1Q96A49 352 aaPredicted RBP19.97■□□□□ 0.79
SMARCA4-201ENST00000344626 TFCP2L1Q9NZI6 479 aa19.97■□□□□ 0.79
SMARCA4-201ENST00000344626 GNAI2P04899 355 aa19.97■□□□□ 0.79
SMARCA4-201ENST00000344626 GNL3LQ9NVN8 582 aaKnown RBP19.97■□□□□ 0.79
SMARCA4-201ENST00000344626 CFAP43Q8NDM7 1665 aa19.97■□□□□ 0.79
SMARCA4-201ENST00000344626 CCAR1Q8IX12 1150 aaKnown RBP19.97■□□□□ 0.79
SMARCA4-201ENST00000344626 TBC1D2BQ9UPU7 963 aa19.97■□□□□ 0.79
SMARCA4-201ENST00000344626 IL2RBP14784 551 aa19.97■□□□□ 0.79
SMARCA4-201ENST00000344626 SIL1Q9H173 461 aa19.97■□□□□ 0.79
SMARCA4-201ENST00000344626 ZRANB1Q9UGI0 708 aa19.97■□□□□ 0.79
SMARCA4-201ENST00000344626 FAM98CQ17RN3 349 aaKnown RBP19.96■□□□□ 0.79
SMARCA4-201ENST00000344626 FMNL2Q96PY5 1086 aa19.96■□□□□ 0.79
SMARCA4-201ENST00000344626 TMEM2Q9UHN6 1383 aa19.96■□□□□ 0.79
SMARCA4-201ENST00000344626 PANK1Q8TE04 598 aa19.96■□□□□ 0.79
SMARCA4-201ENST00000344626 PPIP5K1Q6PFW1 1433 aa19.96■□□□□ 0.79
SMARCA4-201ENST00000344626 FAM184AQ8NB25 1140 aa19.96■□□□□ 0.79
SMARCA4-201ENST00000344626 ERICH2A1L162 156 aa19.95■□□□□ 0.78
SMARCA4-201ENST00000344626 GPTP24298 496 aa19.95■□□□□ 0.78
SMARCA4-201ENST00000344626 CDCA7LQ96GN5 454 aa19.95■□□□□ 0.78
SMARCA4-201ENST00000344626 TMPOP42166 694 aaKnown RBP19.95■□□□□ 0.78
SMARCA4-201ENST00000344626 CHD1O14646 1710 aa19.95■□□□□ 0.78
SMARCA4-201ENST00000344626 MTMR7Q9Y216 660 aa19.94■□□□□ 0.78
SMARCA4-201ENST00000344626 ZNF335Q9H4Z2 1342 aaPredicted RBP19.94■□□□□ 0.78
SMARCA4-201ENST00000344626 H3BQV1 296 aa19.93■□□□□ 0.78
SMARCA4-201ENST00000344626 IFFO2Q5TF58 517 aa19.93■□□□□ 0.78
SMARCA4-201ENST00000344626 INTS3Q68E01 1043 aaKnown RBP19.93■□□□□ 0.78
SMARCA4-201ENST00000344626 ZNF622Q969S3 477 aaKnown RBP eCLIP19.93■□□□□ 0.782e-8■■□□□ 13.2
SMARCA4-201ENST00000344626 PAXIP1Q6ZW49 1069 aaPredicted RBP19.93■□□□□ 0.78
SMARCA4-201ENST00000344626 ATP6V1AP38606 617 aa19.93■□□□□ 0.78
SMARCA4-201ENST00000344626 ZBTB3Q9H5J0 574 aa19.93■□□□□ 0.78
SMARCA4-201ENST00000344626 IGHMBP2P38935 993 aaKnown RBP19.93■□□□□ 0.78
SMARCA4-201ENST00000344626 CFAP74Q9C0B2 1584 aa19.92■□□□□ 0.78
SMARCA4-201ENST00000344626 TMEM94Q12767 1356 aa19.92■□□□□ 0.78
SMARCA4-201ENST00000344626 ANO2Q9NQ90 1003 aa19.92■□□□□ 0.78
SMARCA4-201ENST00000344626 TRMT112Q9UI30 125 aaKnown RBP19.92■□□□□ 0.78
SMARCA4-201ENST00000344626 NOB1Q9ULX3 412 aaKnown RBP19.92■□□□□ 0.78
SMARCA4-201ENST00000344626 PDE3AQ14432 1141 aa19.92■□□□□ 0.78
SMARCA4-201ENST00000344626 RPGRQ92834 1020 aaKnown RBP19.91■□□□□ 0.78
SMARCA4-201ENST00000344626 POLD1P28340 1107 aa19.91■□□□□ 0.78
SMARCA4-201ENST00000344626 DUSP27Q5VZP5 1158 aa19.91■□□□□ 0.78
SMARCA4-201ENST00000344626 SLKQ9H2G2 1235 aaPredicted RBP19.91■□□□□ 0.78
SMARCA4-201ENST00000344626 SLC4A3P48751 1232 aa19.91■□□□□ 0.78
SMARCA4-201ENST00000344626 IKQ13123 557 aaPredicted RBP19.91■□□□□ 0.78
SMARCA4-201ENST00000344626 DNTTIP2Q5QJE6 756 aaKnown RBP19.91■□□□□ 0.78
SMARCA4-201ENST00000344626 SF3A1Q15459 793 aaKnown RBP19.91■□□□□ 0.78
SMARCA4-201ENST00000344626 CCDC158Q5M9N0 1113 aa19.9■□□□□ 0.78
SMARCA4-201ENST00000344626 SMARCC1Q92922 1105 aaPredicted RBP19.9■□□□□ 0.78
SMARCA4-201ENST00000344626 CNTROBQ8N137 903 aa19.9■□□□□ 0.78
SMARCA4-201ENST00000344626 TPM4P67936 248 aa19.9■□□□□ 0.78
SMARCA4-201ENST00000344626 DNAJC2Q99543 621 aaKnown RBP19.9■□□□□ 0.78
SMARCA4-201ENST00000344626 ANKRD36BQ8N2N9 1353 aa19.9■□□□□ 0.78
SMARCA4-201ENST00000344626 ABCC11Q96J66 1382 aa19.9■□□□□ 0.78
SMARCA4-201ENST00000344626 TRIM29Q14134 588 aa19.9■□□□□ 0.78
SMARCA4-201ENST00000344626 TEX13AQ9BXU3 409 aaPredicted RBP19.89■□□□□ 0.77
SMARCA4-201ENST00000344626 LNPKQ9C0E8 428 aa19.89■□□□□ 0.77
SMARCA4-201ENST00000344626 CPLX1O14810 134 aa19.89■□□□□ 0.77
SMARCA4-201ENST00000344626 TCEAL9Q9UHQ7 104 aa19.89■□□□□ 0.77
SMARCA4-201ENST00000344626 ZSCAN29Q8IWY8 852 aaPredicted RBP19.88■□□□□ 0.77
SMARCA4-201ENST00000344626 ATP6V1DQ9Y5K8 247 aa19.88■□□□□ 0.77
SMARCA4-201ENST00000344626 SAMD9Q5K651 1589 aa19.88■□□□□ 0.77
SMARCA4-201ENST00000344626 ANKIB1Q9P2G1 1089 aa19.88■□□□□ 0.77
SMARCA4-201ENST00000344626 CEP126Q9P2H0 1117 aa19.88■□□□□ 0.77
SMARCA4-201ENST00000344626 RBM19Q9Y4C8 960 aaKnown RBP19.88■□□□□ 0.77
SMARCA4-201ENST00000344626 IFT57Q9NWB7 429 aa19.88■□□□□ 0.77
SMARCA4-201ENST00000344626 HIP1O00291 1037 aa19.87■□□□□ 0.77
SMARCA4-201ENST00000344626 NFXL1Q6ZNB6 911 aa19.87■□□□□ 0.77
SMARCA4-201ENST00000344626 RALYLQ86SE5 291 aaKnown RBP19.87■□□□□ 0.77
SMARCA4-201ENST00000344626 ANO8Q9HCE9 1232 aaPredicted RBP19.87■□□□□ 0.77
SMARCA4-201ENST00000344626 ERCC6L2Q5T890 1561 aa19.87■□□□□ 0.77
SMARCA4-201ENST00000344626 DRC7Q8IY82 874 aa19.87■□□□□ 0.77
SMARCA4-201ENST00000344626 CFAP65Q6ZU64 1925 aaKnown RBP19.87■□□□□ 0.77
SMARCA4-201ENST00000344626 FSD1Q9BTV5 496 aa19.87■□□□□ 0.77
SMARCA4-201ENST00000344626 TTC39AQ5SRH9 613 aa19.86■□□□□ 0.77
SMARCA4-201ENST00000344626 PUS7Q96PZ0 661 aaKnown RBP19.86■□□□□ 0.77
SMARCA4-201ENST00000344626 GCC1Q96CN9 775 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms