RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 NFE2L2Q16236 605 aa13.18□□□□□ -0.3
LIMA1-201ENST00000341247 ACEP12821 1306 aa13.17□□□□□ -0.3
LIMA1-201ENST00000341247 EDC4Q6P2E9 1401 aaKnown RBP13.17□□□□□ -0.3
LIMA1-201ENST00000341247 PLEKHG1Q9ULL1 1385 aa13.17□□□□□ -0.3
LIMA1-201ENST00000341247 C1orf115Q9H7X2 142 aa13.17□□□□□ -0.3
LIMA1-201ENST00000341247 NRKQ7Z2Y5 1582 aa13.16□□□□□ -0.3
LIMA1-201ENST00000341247 SULT6B1Q6IMI4 303 aa13.16□□□□□ -0.3
LIMA1-201ENST00000341247 AMOTL2Q9Y2J4 779 aa13.16□□□□□ -0.3
LIMA1-201ENST00000341247 EID1Q9Y6B2 187 aa13.16□□□□□ -0.3
LIMA1-201ENST00000341247 TOPAZ1Q8N9V7 1692 aa13.15□□□□□ -0.3
LIMA1-201ENST00000341247 NUTM2GQ5VZR2 741 aa13.15□□□□□ -0.3
LIMA1-201ENST00000341247 MBIPQ9NS73 344 aa13.15□□□□□ -0.3
LIMA1-201ENST00000341247 PLEKHG5O94827 1062 aa13.15□□□□□ -0.3
LIMA1-201ENST00000341247 HSP90AB2PQ58FF8 381 aa13.15□□□□□ -0.3
LIMA1-201ENST00000341247 PEAK1Q9H792 1746 aa13.15□□□□□ -0.3
LIMA1-201ENST00000341247 ARHGAP23Q9P227 1491 aa13.15□□□□□ -0.3
LIMA1-201ENST00000341247 CT47B1P0C2W7 299 aaPredicted RBP13.15□□□□□ -0.3
LIMA1-201ENST00000341247 DDX19BQ9UMR2 479 aa13.15□□□□□ -0.3
LIMA1-201ENST00000341247 IL16Q14005 1332 aa13.15□□□□□ -0.31
LIMA1-201ENST00000341247 TTC21BQ7Z4L5 1316 aa13.14□□□□□ -0.31
LIMA1-201ENST00000341247 KRT24Q2M2I5 525 aa13.14□□□□□ -0.31
LIMA1-201ENST00000341247 ITSN1Q15811 1721 aa13.14□□□□□ -0.31
LIMA1-201ENST00000341247 DLG5Q8TDM6 1919 aa13.14□□□□□ -0.31
LIMA1-201ENST00000341247 SLIT1O75093 1534 aa13.14□□□□□ -0.31
LIMA1-201ENST00000341247 IPO8O15397 1037 aaKnown RBP13.13□□□□□ -0.31
LIMA1-201ENST00000341247 NCBP3Q53F19 620 aaKnown RBP13.13□□□□□ -0.31
LIMA1-201ENST00000341247 ZNF692Q9BU19 519 aaPredicted RBP13.13□□□□□ -0.31
LIMA1-201ENST00000341247 EIF4A2Q14240 407 aaKnown RBP13.13□□□□□ -0.31
LIMA1-201ENST00000341247 C8orf58Q8NAV2 365 aa13.13□□□□□ -0.31
LIMA1-201ENST00000341247 NGDNQ8NEJ9 315 aaKnown RBP13.13□□□□□ -0.31
LIMA1-201ENST00000341247 VAMP4O75379 141 aa13.13□□□□□ -0.31
LIMA1-201ENST00000341247 MCM10Q7L590 875 aa13.13□□□□□ -0.31
LIMA1-201ENST00000341247 KIF16BQ96L93 1317 aa13.12□□□□□ -0.31
LIMA1-201ENST00000341247 SIRT1Q96EB6 747 aa13.12□□□□□ -0.31
LIMA1-201ENST00000341247 KCNA6P17658 529 aa13.12□□□□□ -0.31
LIMA1-201ENST00000341247 TWISTNBQ3B726 338 aaPredicted RBP13.12□□□□□ -0.31
LIMA1-201ENST00000341247 GNAI1P63096 354 aa13.11□□□□□ -0.31
LIMA1-201ENST00000341247 LNPKQ9C0E8 428 aa13.11□□□□□ -0.31
LIMA1-201ENST00000341247 USP19O94966 1318 aa13.11□□□□□ -0.31
LIMA1-201ENST00000341247 C14orf37Q86TY3 774 aa13.11□□□□□ -0.31
LIMA1-201ENST00000341247 MIS18AQ9NYP9 233 aa13.11□□□□□ -0.31
LIMA1-201ENST00000341247 SSH2Q76I76 1423 aa13.1□□□□□ -0.31
LIMA1-201ENST00000341247 RIMS1Q86UR5 1692 aaKnown RBP13.1□□□□□ -0.31
LIMA1-201ENST00000341247 ZBTB40Q9NUA8 1239 aa13.1□□□□□ -0.31
LIMA1-201ENST00000341247 OVOS2A0A0J9YW53 1432 aa13.1□□□□□ -0.31
LIMA1-201ENST00000341247 USP6P35125 1406 aa13.1□□□□□ -0.31
LIMA1-201ENST00000341247 OVOS2Q6IE36 1432 aa13.1□□□□□ -0.31
LIMA1-201ENST00000341247 AAMPQ13685 434 aa13.1□□□□□ -0.31
LIMA1-201ENST00000341247 CDK12Q9NYV4 1490 aaPredicted RBP13.1□□□□□ -0.31
LIMA1-201ENST00000341247 MFAP1P55081 439 aaKnown RBP13.09□□□□□ -0.31
LIMA1-201ENST00000341247 SPRYD3Q8NCJ5 442 aa13.09□□□□□ -0.31
LIMA1-201ENST00000341247 FOXO3O43524 673 aa13.09□□□□□ -0.31
LIMA1-201ENST00000341247 MRPL50Q8N5N7 158 aaKnown RBP13.09□□□□□ -0.31
LIMA1-201ENST00000341247 SLKQ9H2G2 1235 aaPredicted RBP13.09□□□□□ -0.31
LIMA1-201ENST00000341247 IFT57Q9NWB7 429 aa13.09□□□□□ -0.31
LIMA1-201ENST00000341247 CALD1Q05682 793 aaKnown RBP13.09□□□□□ -0.31
LIMA1-201ENST00000341247 AATKQ6ZMQ8 1374 aa13.08□□□□□ -0.32
LIMA1-201ENST00000341247 ALDH1L2Q3SY69 923 aa13.08□□□□□ -0.32
LIMA1-201ENST00000341247 LTV1Q96GA3 475 aaPredicted RBP13.08□□□□□ -0.32
LIMA1-201ENST00000341247 UPF2Q9HAU5 1272 aaKnown RBP13.08□□□□□ -0.32
LIMA1-201ENST00000341247 DIP2AQ14689 1571 aa13.08□□□□□ -0.32
LIMA1-201ENST00000341247 CFAP44Q96MT7 982 aa13.08□□□□□ -0.32
LIMA1-201ENST00000341247 PLEKHG3A1L390 1219 aa13.07□□□□□ -0.32
LIMA1-201ENST00000341247 NFKBIBQ15653 356 aa13.07□□□□□ -0.32
LIMA1-201ENST00000341247 XRN1Q8IZH2 1706 aaKnown RBP13.07□□□□□ -0.32
LIMA1-201ENST00000341247 ZBTB7CA1YPR0 619 aa13.07□□□□□ -0.32
LIMA1-201ENST00000341247 AMPHP49418 695 aa13.07□□□□□ -0.32
LIMA1-201ENST00000341247 NALCNQ8IZF0 1738 aa13.07□□□□□ -0.32
LIMA1-201ENST00000341247 LMOD3Q0VAK6 560 aa13.06□□□□□ -0.32
LIMA1-201ENST00000341247 MARF1Q9Y4F3 1742 aaKnown RBP13.06□□□□□ -0.32
LIMA1-201ENST00000341247 ANKRD45Q5TZF3 282 aa13.06□□□□□ -0.32
LIMA1-201ENST00000341247 TBX22Q9Y458 520 aa13.06□□□□□ -0.32
LIMA1-201ENST00000341247 PIK3C2AO00443 1686 aa13.06□□□□□ -0.32
LIMA1-201ENST00000341247 ZNF853P0CG23 659 aa13.06□□□□□ -0.32
LIMA1-201ENST00000341247 NLRP6P59044 892 aa13.06□□□□□ -0.32
LIMA1-201ENST00000341247 HDAC1Q13547 482 aaPredicted RBP13.06□□□□□ -0.32
LIMA1-201ENST00000341247 MAP3K19Q56UN5 1328 aa13.06□□□□□ -0.32
LIMA1-201ENST00000341247 CEP170BQ9Y4F5 1589 aaPredicted RBP13.05□□□□□ -0.32
LIMA1-201ENST00000341247 THEMISQ8N1K5 641 aaPredicted RBP13.05□□□□□ -0.32
LIMA1-201ENST00000341247 ZBTB7BO15156 539 aaPredicted RBP13.04□□□□□ -0.32
LIMA1-201ENST00000341247 APBB1O00213 710 aa13.04□□□□□ -0.32
LIMA1-201ENST00000341247 PTCH1Q13635 1447 aa13.04□□□□□ -0.32
LIMA1-201ENST00000341247 RGPD1P0DJD0 1748 aa13.04□□□□□ -0.32
LIMA1-201ENST00000341247 FRAT2O75474 233 aaPredicted RBP13.03□□□□□ -0.32
LIMA1-201ENST00000341247 SMC5Q8IY18 1101 aa13.03□□□□□ -0.32
LIMA1-201ENST00000341247 NECTIN2Q92692 538 aa13.03□□□□□ -0.32
LIMA1-201ENST00000341247 MTHFSDQ2M296 383 aaKnown RBP13.02□□□□□ -0.33
LIMA1-201ENST00000341247 USP31Q70CQ4 1352 aa13.02□□□□□ -0.33
LIMA1-201ENST00000341247 CHD1LQ86WJ1 897 aa13.01□□□□□ -0.33
LIMA1-201ENST00000341247 TBC1D32Q96NH3 1257 aa13.01□□□□□ -0.33
LIMA1-201ENST00000341247 BECN1Q14457 450 aa13.01□□□□□ -0.33
LIMA1-201ENST00000341247 SIRT2Q8IXJ6 389 aa13.01□□□□□ -0.33
LIMA1-201ENST00000341247 USHBP1Q8N6Y0 703 aa13.01□□□□□ -0.33
LIMA1-201ENST00000341247 ABTB2Q8N961 1025 aa13.01□□□□□ -0.33
LIMA1-201ENST00000341247 RTF1Q92541 710 aaKnown RBP13.01□□□□□ -0.33
LIMA1-201ENST00000341247 ZNF428Q96B54 188 aa13□□□□□ -0.33
LIMA1-201ENST00000341247 EYA1Q99502 592 aa13□□□□□ -0.33
LIMA1-201ENST00000341247 NUCB1Q02818 461 aa13□□□□□ -0.33
LIMA1-201ENST00000341247 SLC4A10Q6U841 1118 aa13□□□□□ -0.33
LIMA1-201ENST00000341247 C22orf23Q9BZE7 217 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms