RNA–Protein interactions for RNA: ENST00000338368.7

PRKDC-202, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRKDC, Length 12,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-202ENST00000338368 ERC2O15083 957 aa7.69□□□□□ -1.18
PRKDC-202ENST00000338368 MBIPQ9NS73 344 aa7.69□□□□□ -1.18
PRKDC-202ENST00000338368 ZKSCAN1P17029 563 aaPredicted RBP7.69□□□□□ -1.18
PRKDC-202ENST00000338368 DMRT2Q9Y5R5 561 aa7.69□□□□□ -1.18
PRKDC-202ENST00000338368 ARHGAP45Q92619 1136 aa7.69□□□□□ -1.18
PRKDC-202ENST00000338368 RNF123Q5XPI4 1314 aa7.68□□□□□ -1.18
PRKDC-202ENST00000338368 DNTTIP2Q5QJE6 756 aaKnown RBP7.68□□□□□ -1.18
PRKDC-202ENST00000338368 DDX54Q8TDD1 881 aaKnown RBP7.68□□□□□ -1.18
PRKDC-202ENST00000338368 SYAP1Q96A49 352 aaPredicted RBP7.68□□□□□ -1.18
PRKDC-202ENST00000338368 BTBD11A6QL63 1104 aa7.68□□□□□ -1.18
PRKDC-202ENST00000338368 SYTL4Q96C24 671 aaPredicted RBP7.68□□□□□ -1.18
PRKDC-202ENST00000338368 SPG7Q9UQ90 795 aa7.68□□□□□ -1.18
PRKDC-202ENST00000338368 EIF4A2Q14240 407 aaKnown RBP7.68□□□□□ -1.18
PRKDC-202ENST00000338368 YEATS2Q9ULM3 1422 aa7.68□□□□□ -1.18
PRKDC-202ENST00000338368 SAMD9LQ8IVG5 1584 aa7.68□□□□□ -1.18
PRKDC-202ENST00000338368 TTC21AQ8NDW8 1320 aa7.68□□□□□ -1.18
PRKDC-202ENST00000338368 PPIP5K1Q6PFW1 1433 aa7.68□□□□□ -1.18
PRKDC-202ENST00000338368 HSP90B1P14625 803 aaKnown RBP7.68□□□□□ -1.18
PRKDC-202ENST00000338368 TAF7Q15545 349 aaPredicted RBP7.68□□□□□ -1.18
PRKDC-202ENST00000338368 INSRP06213 1382 aa7.68□□□□□ -1.18
PRKDC-202ENST00000338368 GTF2E1P29083 439 aaPredicted RBP7.67□□□□□ -1.18
PRKDC-202ENST00000338368 PHACTR3Q96KR7 559 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 HTATSF1O43719 755 aaKnown RBP7.67□□□□□ -1.18
PRKDC-202ENST00000338368 FRAT2O75474 233 aaPredicted RBP7.67□□□□□ -1.18
PRKDC-202ENST00000338368 RLBP1P12271 317 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 TOM1L2Q6ZVM7 507 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 SRGAP3O43295 1099 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 NEUROD6Q96NK8 337 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 AEBP1Q8IUX7 1158 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 CABP4P57796 275 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 C8orf58Q8NAV2 365 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 EXOC6BQ9Y2D4 811 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 NEO1Q92859 1461 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 IL1RAPL2Q9NP60 686 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 KIF3AQ9Y496 699 aa7.67□□□□□ -1.18
PRKDC-202ENST00000338368 NEK4P51957 841 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 AMOTQ4VCS5 1084 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 PTPRTO14522 1441 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 NUCB2P80303 420 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 ATP6V1DQ9Y5K8 247 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 KRT28Q7Z3Y7 464 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 KCNA6P17658 529 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 PRDM11Q9NQV5 511 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 VAMP4O75379 141 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 FOXD4L6Q3SYB3 417 aaPredicted RBP7.66□□□□□ -1.18
PRKDC-202ENST00000338368 FOXD4L3Q6VB84 417 aaPredicted RBP7.66□□□□□ -1.18
PRKDC-202ENST00000338368 MPRIPQ6WCQ1 1025 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 MAST1Q9Y2H9 1570 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 MSNP26038 577 aaKnown RBP7.66□□□□□ -1.18
PRKDC-202ENST00000338368 MLH3Q9UHC1 1453 aa7.66□□□□□ -1.18
PRKDC-202ENST00000338368 FLIIQ13045 1269 aa7.65□□□□□ -1.18
PRKDC-202ENST00000338368 HDAC1Q13547 482 aaPredicted RBP7.65□□□□□ -1.18
PRKDC-202ENST00000338368 EIF2AK4Q9P2K8 1649 aaKnown RBP7.65□□□□□ -1.18
PRKDC-202ENST00000338368 MAGI2Q86UL8 1455 aa7.65□□□□□ -1.18
PRKDC-202ENST00000338368 LRRFIP1Q32MZ4 808 aaKnown RBP7.65□□□□□ -1.18
PRKDC-202ENST00000338368 NCBP3Q53F19 620 aaKnown RBP7.65□□□□□ -1.18
PRKDC-202ENST00000338368 RNF20Q5VTR2 975 aa7.65□□□□□ -1.18
PRKDC-202ENST00000338368 TSPYL6Q8N831 410 aa7.65□□□□□ -1.18
PRKDC-202ENST00000338368 GNL2Q13823 731 aaKnown RBP7.65□□□□□ -1.19
PRKDC-202ENST00000338368 CSPP1Q1MSJ5 1256 aa7.65□□□□□ -1.19
PRKDC-202ENST00000338368 MTHFSDQ2M296 383 aaKnown RBP7.65□□□□□ -1.19
PRKDC-202ENST00000338368 SBNO2Q9Y2G9 1366 aa7.65□□□□□ -1.19
PRKDC-202ENST00000338368 RABEP1Q15276 862 aa7.65□□□□□ -1.19
PRKDC-202ENST00000338368 CNTROBQ8N137 903 aa7.65□□□□□ -1.19
PRKDC-202ENST00000338368 MYL6BP14649 208 aa7.64□□□□□ -1.19
PRKDC-202ENST00000338368 EYA1Q99502 592 aa7.64□□□□□ -1.19
PRKDC-202ENST00000338368 STRN4Q9NRL3 753 aa7.64□□□□□ -1.19
PRKDC-202ENST00000338368 MRPL50Q8N5N7 158 aaKnown RBP7.64□□□□□ -1.19
PRKDC-202ENST00000338368 NAP1L5Q96NT1 182 aaPredicted RBP7.64□□□□□ -1.19
PRKDC-202ENST00000338368 MAP3K19Q56UN5 1328 aa7.64□□□□□ -1.19
PRKDC-202ENST00000338368 ERC1Q8IUD2 1116 aa7.64□□□□□ -1.19
PRKDC-202ENST00000338368 MEIS3Q99687 375 aa7.64□□□□□ -1.19
PRKDC-202ENST00000338368 SIRT1Q96EB6 747 aa7.64□□□□□ -1.19
PRKDC-202ENST00000338368 RBM42Q9BTD8 480 aaKnown RBP7.64□□□□□ -1.19
PRKDC-202ENST00000338368 PTPRCP08575 1304 aa7.64□□□□□ -1.19
PRKDC-202ENST00000338368 KRT24Q2M2I5 525 aa7.64□□□□□ -1.19
PRKDC-202ENST00000338368 TOMM22Q9NS69 142 aa7.64□□□□□ -1.19
PRKDC-202ENST00000338368 TRIM35Q9UPQ4 493 aa7.64□□□□□ -1.19
PRKDC-202ENST00000338368 ERCC6L2Q5T890 1561 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 TRAK2O60296 914 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 RSPH6AQ9H0K4 717 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 ABCC1P33527 1531 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 SMC3Q9UQE7 1217 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 FAM184AQ8NB25 1140 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 FSD1Q9BTV5 496 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 DCAF8L1A6NGE4 600 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 K7ELQ4 463 aaPredicted RBP7.63□□□□□ -1.19
PRKDC-202ENST00000338368 SMARCA5O60264 1052 aaPredicted RBP7.63□□□□□ -1.19
PRKDC-202ENST00000338368 SIL1Q9H173 461 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 MCTP1Q6DN14 999 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 GCC2Q8IWJ2 1684 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 BLMP54132 1417 aaPredicted RBP7.63□□□□□ -1.19
PRKDC-202ENST00000338368 IL13P35225 146 aa7.63□□□□□ -1.19
PRKDC-202ENST00000338368 DNAJC2Q99543 621 aaKnown RBP7.63□□□□□ -1.19
PRKDC-202ENST00000338368 FLT4P35916 1363 aa7.62□□□□□ -1.19
PRKDC-202ENST00000338368 CHMP4CQ96CF2 233 aa7.62□□□□□ -1.19
PRKDC-202ENST00000338368 MCM2P49736 904 aa7.62□□□□□ -1.19
PRKDC-202ENST00000338368 TMX4Q9H1E5 349 aaPredicted RBP7.62□□□□□ -1.19
PRKDC-202ENST00000338368 GCP02774 474 aa7.62□□□□□ -1.19
PRKDC-202ENST00000338368 KDM5DQ9BY66 1539 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms