RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 NGEFQ8N5V2 710 aa19.36■□□□□ 0.69
CBX3-201ENST00000337620 GTF3C3Q9Y5Q9 886 aa19.36■□□□□ 0.69
CBX3-201ENST00000337620 KIF24Q5T7B8 1368 aa19.36■□□□□ 0.69
CBX3-201ENST00000337620 NEFMP07197 916 aa19.34■□□□□ 0.69
CBX3-201ENST00000337620 SLIT3O75094 1523 aa19.34■□□□□ 0.69
CBX3-201ENST00000337620 SOS2Q07890 1332 aaPredicted RBP19.34■□□□□ 0.69
CBX3-201ENST00000337620 ZNF521Q96K83 1311 aa19.34■□□□□ 0.69
CBX3-201ENST00000337620 IQSEC2Q5JU85 1478 aa19.34■□□□□ 0.69
CBX3-201ENST00000337620 LTN1O94822 1766 aa19.33■□□□□ 0.69
CBX3-201ENST00000337620 IP6K1Q92551 441 aa19.33■□□□□ 0.69
CBX3-201ENST00000337620 SULT6B1Q6IMI4 303 aa19.33■□□□□ 0.68
CBX3-201ENST00000337620 LTV1Q96GA3 475 aaPredicted RBP19.33■□□□□ 0.68
CBX3-201ENST00000337620 RTL1A6NKG5 1358 aa19.32■□□□□ 0.68
CBX3-201ENST00000337620 ARHGEF10O15013 1369 aa19.32■□□□□ 0.68
CBX3-201ENST00000337620 GOLGA2Q08379 1002 aa19.32■□□□□ 0.68
CBX3-201ENST00000337620 ARHGEF25Q86VW2 580 aa19.32■□□□□ 0.68
CBX3-201ENST00000337620 CABLES1Q8TDN4 633 aa19.32■□□□□ 0.68
CBX3-201ENST00000337620 ZC3H6P61129 1189 aaKnown RBP19.31■□□□□ 0.68
CBX3-201ENST00000337620 WWC1Q8IX03 1113 aa19.31■□□□□ 0.68
CBX3-201ENST00000337620 TMPOP42166 694 aaKnown RBP19.31■□□□□ 0.68
CBX3-201ENST00000337620 AEBP1Q8IUX7 1158 aa19.31■□□□□ 0.68
CBX3-201ENST00000337620 MED1Q15648 1581 aaPredicted RBP19.31■□□□□ 0.68
CBX3-201ENST00000337620 PHACTR3Q96KR7 559 aa19.3■□□□□ 0.68
CBX3-201ENST00000337620 SUPT16HQ9Y5B9 1047 aaKnown RBP19.3■□□□□ 0.68
CBX3-201ENST00000337620 EYA1Q99502 592 aa19.29■□□□□ 0.68
CBX3-201ENST00000337620 RIPK4P57078 832 aa19.28■□□□□ 0.68
CBX3-201ENST00000337620 CCDC27Q2M243 656 aa19.28■□□□□ 0.68
CBX3-201ENST00000337620 NCBP3Q53F19 620 aaKnown RBP19.27■□□□□ 0.68
CBX3-201ENST00000337620 NHSL1Q5SYE7 1610 aa19.27■□□□□ 0.68
CBX3-201ENST00000337620 PHF23Q9BUL5 403 aaPredicted RBP19.27■□□□□ 0.67
CBX3-201ENST00000337620 RGPD1P0DJD0 1748 aa19.26■□□□□ 0.67
CBX3-201ENST00000337620 SLFN5Q08AF3 891 aa19.26■□□□□ 0.67
CBX3-201ENST00000337620 ROBO1Q9Y6N7 1651 aa19.26■□□□□ 0.67
CBX3-201ENST00000337620 IGSF1Q8N6C5 1336 aa19.25■□□□□ 0.67
CBX3-201ENST00000337620 SPINK5Q9NQ38 1064 aaPredicted RBP19.25■□□□□ 0.67
CBX3-201ENST00000337620 PHRF1Q9P1Y6 1649 aaKnown RBP19.25■□□□□ 0.67
CBX3-201ENST00000337620 NFE2L2Q16236 605 aa19.25■□□□□ 0.67
CBX3-201ENST00000337620 E9PSI1 815 aa19.24■□□□□ 0.67
CBX3-201ENST00000337620 HAP1P54257 671 aaPredicted RBP19.24■□□□□ 0.67
CBX3-201ENST00000337620 TRIM35Q9UPQ4 493 aa19.24■□□□□ 0.67
CBX3-201ENST00000337620 AXIN2Q9Y2T1 843 aa19.24■□□□□ 0.67
CBX3-201ENST00000337620 TOM1O60784 492 aa19.24■□□□□ 0.67
CBX3-201ENST00000337620 DUSP27Q5VZP5 1158 aa19.24■□□□□ 0.67
CBX3-201ENST00000337620 WDR63Q8IWG1 891 aa19.24■□□□□ 0.67
CBX3-201ENST00000337620 PIP4K2BP78356 416 aa19.22■□□□□ 0.67
CBX3-201ENST00000337620 USHBP1Q8N6Y0 703 aa19.22■□□□□ 0.67
CBX3-201ENST00000337620 ANKRD24Q8TF21 1146 aa19.22■□□□□ 0.67
CBX3-201ENST00000337620 CHRNA2Q15822 529 aa19.21■□□□□ 0.67
CBX3-201ENST00000337620 NBPF6Q5VWK0 638 aa19.21■□□□□ 0.67
CBX3-201ENST00000337620 LRRC59Q96AG4 307 aaKnown RBP19.21■□□□□ 0.67
CBX3-201ENST00000337620 NBPF4Q96M43 638 aa19.21■□□□□ 0.67
CBX3-201ENST00000337620 KDRP35968 1356 aa19.21■□□□□ 0.67
CBX3-201ENST00000337620 NEFLP07196 543 aa19.21■□□□□ 0.67
CBX3-201ENST00000337620 TRMT2AQ8IZ69 625 aaKnown RBP19.21■□□□□ 0.67
CBX3-201ENST00000337620 KIAA0232Q92628 1395 aa19.21■□□□□ 0.67
CBX3-201ENST00000337620 CRYBG1Q9Y4K1 1723 aa19.2■□□□□ 0.66
CBX3-201ENST00000337620 UBAP1LF5GYI3 381 aa19.19■□□□□ 0.66
CBX3-201ENST00000337620 RCAN3Q9UKA8 241 aa19.19■□□□□ 0.66
CBX3-201ENST00000337620 CPDO75976 1380 aa19.18■□□□□ 0.66
CBX3-201ENST00000337620 RGPD5Q99666 1765 aa19.17■□□□□ 0.66
CBX3-201ENST00000337620 AHDC1Q5TGY3 1603 aaPredicted RBP19.17■□□□□ 0.66
CBX3-201ENST00000337620 FKBP8Q14318 412 aa19.17■□□□□ 0.66
CBX3-201ENST00000337620 PRDM11Q9NQV5 511 aa19.17■□□□□ 0.66
CBX3-201ENST00000337620 LMOD3Q0VAK6 560 aa19.16■□□□□ 0.66
CBX3-201ENST00000337620 ERBB3P21860 1342 aa19.16■□□□□ 0.66
CBX3-201ENST00000337620 MTHFSDQ2M296 383 aaKnown RBP19.16■□□□□ 0.66
CBX3-201ENST00000337620 RGPD2P0DJD1 1756 aa19.15■□□□□ 0.66
CBX3-201ENST00000337620 MYH16Q9H6N6 1097 aa19.15■□□□□ 0.66
CBX3-201ENST00000337620 THUMPD2Q9BTF0 503 aaKnown RBP19.15■□□□□ 0.66
CBX3-201ENST00000337620 COL18A1P39060 1754 aa19.14■□□□□ 0.65
CBX3-201ENST00000337620 FAM83GA6ND36 823 aa19.14■□□□□ 0.65
CBX3-201ENST00000337620 CSB-PGBD3P0DP91 1061 aa19.14■□□□□ 0.65
CBX3-201ENST00000337620 IRX6P78412 446 aaPredicted RBP19.14■□□□□ 0.65
CBX3-201ENST00000337620 DLG5Q8TDM6 1919 aa19.14■□□□□ 0.65
CBX3-201ENST00000337620 NLRP2Q9NX02 1062 aa19.13■□□□□ 0.65
CBX3-201ENST00000337620 IL16Q14005 1332 aa19.13■□□□□ 0.65
CBX3-201ENST00000337620 DCTN1Q14203 1278 aa19.13■□□□□ 0.65
CBX3-201ENST00000337620 GAS2L2Q8NHY3 880 aa19.13■□□□□ 0.65
CBX3-201ENST00000337620 LAS1LQ9Y4W2 734 aaKnown RBP19.12■□□□□ 0.65
CBX3-201ENST00000337620 PHLPP1O60346 1717 aa19.12■□□□□ 0.65
CBX3-201ENST00000337620 ABCA3Q99758 1704 aa19.12■□□□□ 0.65
CBX3-201ENST00000337620 CALD1Q05682 793 aaKnown RBP19.12■□□□□ 0.65
CBX3-201ENST00000337620 CERKQ8TCT0 537 aa19.12■□□□□ 0.65
CBX3-201ENST00000337620 TSR2Q969E8 191 aaKnown RBP19.12■□□□□ 0.65
CBX3-201ENST00000337620 ABCC6O95255 1503 aa19.1■□□□□ 0.65
CBX3-201ENST00000337620 MCM10Q7L590 875 aa19.1■□□□□ 0.65
CBX3-201ENST00000337620 FANCIQ9NVI1 1328 aa19.09■□□□□ 0.65
CBX3-201ENST00000337620 RTF1Q92541 710 aaKnown RBP19.09■□□□□ 0.65
CBX3-201ENST00000337620 RNF123Q5XPI4 1314 aa19.09■□□□□ 0.65
CBX3-201ENST00000337620 NCAPD2Q15021 1401 aa19.07■□□□□ 0.64
CBX3-201ENST00000337620 COL16A1Q07092 1604 aaPredicted RBP19.07■□□□□ 0.64
CBX3-201ENST00000337620 RRP1P56182 461 aaKnown RBP19.07■□□□□ 0.64
CBX3-201ENST00000337620 GNAI1P63096 354 aa19.07■□□□□ 0.64
CBX3-201ENST00000337620 CAMTA1Q9Y6Y1 1673 aa19.07■□□□□ 0.64
CBX3-201ENST00000337620 GNAT3A8MTJ3 354 aa19.06■□□□□ 0.64
CBX3-201ENST00000337620 PLEKHO1Q53GL0 409 aaPredicted RBP19.06■□□□□ 0.64
CBX3-201ENST00000337620 IFT57Q9NWB7 429 aa19.06■□□□□ 0.64
CBX3-201ENST00000337620 EXOSC9Q06265 439 aaKnown RBP19.06■□□□□ 0.64
CBX3-201ENST00000337620 EVA1CP58658 441 aa19.05■□□□□ 0.64
CBX3-201ENST00000337620 RAPGEF4Q8WZA2 1011 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms